ISTfo1
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FMMN01000067 | ND | Tannerella forsythia | Tannerella forsythia UB4 Tannerella forsythia 92A2 Tannerella forsythia KS16 Tannerella forsythia 3313 |
DNA section
IS Length : 997 bp
Ends
IR Length : 18/24
IRL : AATGAATATCCGTATATTTGCCCAGAAATAATTATCTTTGCAAAAAAAAT
IRR : TATGATTATCCGTATTTATACCTAAACTCATTTTTATAGGTTACGCAAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTATCGTACACAAA | TAAGATAA | TTATAGATATATATCTAT | 8 |
TCAGTTTCATCTTGTTTGATTTT | TTTTGAT | TTATGCGGATTCCAGAGGTGAG | 7 |
TATTGACTTGGAATAAAGCTAT | TTATTTTT | TATTGTAAAAAGTAAAGGAACG | 8 |
CTTTCATTAACGGTATCTCTAATTAATTTA | TTATTTTATATTACTGTCCGGTAAAATGTG | 0 |
DNA sequence
AATGAATATCCGTATATTTGCCCAGAAATAATTATCTTTGCAAAAAAAATAAGGCAATGACACTGATCGATTTTTTATCTCACTTTCCAGACGAAGAAAG
CTGCAAGCAAAAGTTTAAGGCATATCGCGACCAAGTAGGAGTTGTTTGTTCCAAATGCGGAGGCACGGATCATTATTGGAAAAAAGACAAGGAGCAATAT
GAATGCAAACACTGCCAAACACGCACCACGCTAAAAAGTGGAACGGTAATGCATAAATCGAAACTTCCTTTTCGTTATTGGTTTATAGCCATGCATCTGC
TCACGTCAACGAAAAAGACATTTTCGACCAAAGAAATCCAGCGTCAATTGGGACATAATCGTTATCATCCTATTTGGCATATGGTTCACAAACTTCGCGA
GGCCATGGGTAAAAGAGATGATGAATATGTCCTTGCAGGTTGTATAGAGTTGGATGAAGGTTATTTTTCCACAGAGATGAGTCAAGCGGAAAAAGATAAA
CCCTTGAAGCGTGGACGTGGCAGTCAAAAGAAAAGCAAAGTTTTAGTTATGGCAGAAAGTGAAATGGTTGAATTTCCGAAAACCGGTCAAAAACCACGAA
GAGTCGGTTATTTGAAAATGAAAGTAATCGATGACTTGAAAAAAGAGACCATTAATGCAGCGGTTCAGCAGTTAGCTTCCGGAGCTAATCAAATCGACAC
GGATCATTCTACCTCTTATGTGGAATTGAAAGACTTTGTACCTAGACACAACTCTCAGGTGATTCCCAAAGAGAAGGTGGGGGAAGCCTTGCCTTGGGTT
CATATCGCCATCAGCAATGCCAAGAGACAGTTGATAAATACGTTCCATGACATCAAGCCCGAATTCCTGCAAAATTATCTCGATGAATTCTGTTATAAGT
TTAATCGAAGATACTGGGGAGAAGCCCTCTTTGGAAGATTGCTCGTAGCTTGCGTAACCTATAAAAATGAGTTTAGGTATAAATACGGATAATCATA
CTGCAAGCAAAAGTTTAAGGCATATCGCGACCAAGTAGGAGTTGTTTGTTCCAAATGCGGAGGCACGGATCATTATTGGAAAAAAGACAAGGAGCAATAT
GAATGCAAACACTGCCAAACACGCACCACGCTAAAAAGTGGAACGGTAATGCATAAATCGAAACTTCCTTTTCGTTATTGGTTTATAGCCATGCATCTGC
TCACGTCAACGAAAAAGACATTTTCGACCAAAGAAATCCAGCGTCAATTGGGACATAATCGTTATCATCCTATTTGGCATATGGTTCACAAACTTCGCGA
GGCCATGGGTAAAAGAGATGATGAATATGTCCTTGCAGGTTGTATAGAGTTGGATGAAGGTTATTTTTCCACAGAGATGAGTCAAGCGGAAAAAGATAAA
CCCTTGAAGCGTGGACGTGGCAGTCAAAAGAAAAGCAAAGTTTTAGTTATGGCAGAAAGTGAAATGGTTGAATTTCCGAAAACCGGTCAAAAACCACGAA
GAGTCGGTTATTTGAAAATGAAAGTAATCGATGACTTGAAAAAAGAGACCATTAATGCAGCGGTTCAGCAGTTAGCTTCCGGAGCTAATCAAATCGACAC
GGATCATTCTACCTCTTATGTGGAATTGAAAGACTTTGTACCTAGACACAACTCTCAGGTGATTCCCAAAGAGAAGGTGGGGGAAGCCTTGCCTTGGGTT
CATATCGCCATCAGCAATGCCAAGAGACAGTTGATAAATACGTTCCATGACATCAAGCCCGAATTCCTGCAAAATTATCTCGATGAATTCTGTTATAAGT
TTAATCGAAGATACTGGGGAGAAGCCCTCTTTGGAAGATTGCTCGTAGCTTGCGTAACCTATAAAAATGAGTTTAGGTATAAATACGGATAATCATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
936 bp | 311 aa | 57 | 992 | + | No |
Chemistry : DDE
ORF sequence :
MTLIDFLSHFPDEESCKQKFKAYRDQVGVVCSKCGGTDHYWKKDKEQYECKHCQTRTTLKSGTVMHKSKLPFRYWFIAMHLLTSTKKTFSTKEIQRQLGH
NRYHPIWHMVHKLREAMGKRDDEYVLAGCIELDEGYFSTEMSQAEKDKPLKRGRGSQKKSKVLVMAESEMVEFPKTGQKPRRVGYLKMKVIDDLKKETIN
AAVQQLASGANQIDTDHSTSYVELKDFVPRHNSQVIPKEKVGEALPWVHIAISNAKRQLINTFHDIKPEFLQNYLDEFCYKFNRRYWGEALFGRLLVACV
TYKNEFRYKYG
NRYHPIWHMVHKLREAMGKRDDEYVLAGCIELDEGYFSTEMSQAEKDKPLKRGRGSQKKSKVLVMAESEMVEFPKTGQKPRRVGYLKMKVIDDLKKETIN
AAVQQLASGANQIDTDHSTSYVELKDFVPRHNSQVIPKEKVGEALPWVHIAISNAKRQLINTFHDIKPEFLQNYLDEFCYKFNRRYWGEALFGRLLVACV
TYKNEFRYKYG
Blast result :
Comments
ISTfo1 is 67% aa similar to ISAlg2.
References
1] ISfinder annotation (2017)
2] Chaudhuri,R. (2016) Direct GenBank submission.
2] Chaudhuri,R. (2016) Direct GenBank submission.