ISTfo1

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FMMN01000067 ND Tannerella forsythia
Tannerella forsythia UB4
Tannerella forsythia 92A2
Tannerella forsythia KS16
Tannerella forsythia 3313
DNA section
IS Length : 997 bp

Ends


IR Length : 18/24

IRL : AATGAATATCCGTATATTTGCCCAGAAATAATTATCTTTGCAAAAAAAAT
IRR : TATGATTATCCGTATTTATACCTAAACTCATTTTTATAGGTTACGCAAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GATTATCGTACACAAATAAGATAATTATAGATATATATCTAT8
TCAGTTTCATCTTGTTTGATTTTTTTTGATTTATGCGGATTCCAGAGGTGAG7
TATTGACTTGGAATAAAGCTATTTATTTTTTATTGTAAAAAGTAAAGGAACG8
CTTTCATTAACGGTATCTCTAATTAATTTATTATTTTATATTACTGTCCGGTAAAATGTG0

DNA sequence

AATGAATATCCGTATATTTGCCCAGAAATAATTATCTTTGCAAAAAAAATAAGGCAATGACACTGATCGATTTTTTATCTCACTTTCCAGACGAAGAAAG
CTGCAAGCAAAAGTTTAAGGCATATCGCGACCAAGTAGGAGTTGTTTGTTCCAAATGCGGAGGCACGGATCATTATTGGAAAAAAGACAAGGAGCAATAT
GAATGCAAACACTGCCAAACACGCACCACGCTAAAAAGTGGAACGGTAATGCATAAATCGAAACTTCCTTTTCGTTATTGGTTTATAGCCATGCATCTGC
TCACGTCAACGAAAAAGACATTTTCGACCAAAGAAATCCAGCGTCAATTGGGACATAATCGTTATCATCCTATTTGGCATATGGTTCACAAACTTCGCGA
GGCCATGGGTAAAAGAGATGATGAATATGTCCTTGCAGGTTGTATAGAGTTGGATGAAGGTTATTTTTCCACAGAGATGAGTCAAGCGGAAAAAGATAAA
CCCTTGAAGCGTGGACGTGGCAGTCAAAAGAAAAGCAAAGTTTTAGTTATGGCAGAAAGTGAAATGGTTGAATTTCCGAAAACCGGTCAAAAACCACGAA
GAGTCGGTTATTTGAAAATGAAAGTAATCGATGACTTGAAAAAAGAGACCATTAATGCAGCGGTTCAGCAGTTAGCTTCCGGAGCTAATCAAATCGACAC
GGATCATTCTACCTCTTATGTGGAATTGAAAGACTTTGTACCTAGACACAACTCTCAGGTGATTCCCAAAGAGAAGGTGGGGGAAGCCTTGCCTTGGGTT
CATATCGCCATCAGCAATGCCAAGAGACAGTTGATAAATACGTTCCATGACATCAAGCCCGAATTCCTGCAAAATTATCTCGATGAATTCTGTTATAAGT
TTAATCGAAGATACTGGGGAGAAGCCCTCTTTGGAAGATTGCTCGTAGCTTGCGTAACCTATAAAAATGAGTTTAGGTATAAATACGGATAATCATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
936 bp311 aa57992+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTLIDFLSHFPDEESCKQKFKAYRDQVGVVCSKCGGTDHYWKKDKEQYECKHCQTRTTLKSGTVMHKSKLPFRYWFIAMHLLTSTKKTFSTKEIQRQLGH
NRYHPIWHMVHKLREAMGKRDDEYVLAGCIELDEGYFSTEMSQAEKDKPLKRGRGSQKKSKVLVMAESEMVEFPKTGQKPRRVGYLKMKVIDDLKKETIN
AAVQQLASGANQIDTDHSTSYVELKDFVPRHNSQVIPKEKVGEALPWVHIAISNAKRQLINTFHDIKPEFLQNYLDEFCYKFNRRYWGEALFGRLLVACV
TYKNEFRYKYG

 

Blast result :
Comments
ISTfo1 is 67% aa similar to ISAlg2.
References
1] ISfinder annotation (2017)
2] Chaudhuri,R. (2016) Direct GenBank submission.