ISDess1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JYNH01000181 | ND | Desulfosporosinus sp. | Desulfosporosinus sp. I2 |
DNA section
IS Length : 1176 bp
Ends
IR Length : 19/25
IRL : GGCTTAGTTAAAGAGTGATCTTGATATTTGATACTTATGTCCAAGCCATG
IRR : GGCTTAGTTAAACTCTAGTGTTGATTTTGCCCAAGATAATTAATAATGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGCGATTA | ATATTTTA | AAAACTATAA | 8 |
DNA sequence
GGCTTAGTTAAAGAGTGATCTTGATATTTGATACTTATGTCCAAGCCATGTCTTACAATAGAGTTAGGAACCTATTTAAGGAGGACTCTATTCATGGACG
GAACACTCTTTGGCTCGATAATTGAGCTTATCTCTCGTTTAAGCTACGACGAAACGGAACGACTTGTCCTTAAAATACAAAATATGCAGAGCAACTCGAC
CCAAGGCAATGCTAGACTGATTAGCGAACTCCGTGAAAAGAAGTTTAGCGAAGGCTTTACTTGCCCTCATTGTAGAGGTTCCCATGTTGTTCGGTTTGGC
AAGTTCAAGGGTCGTCAACGGTATCGATGTAAGGACTGTTCCAAGACTTTTAGCGACTTAACGGCCACTCCTTTAGCAAGAACTCGCTATCCGAATAAGT
GGATTCACTTTATTGACTGTATGCTCCAGGGACTTCCACTTCGTAAATCAGCAGAGATTTTGGACGTTTCCCACGTAACCTTGTTTTACTGGCGACACAA
GTTGTTAACTGCCCTACGCCAGATGGATATTCCTTCATTCAAGGGAATCTTGGAGGCTGACGAAACCTATTTTCTCTATTCAGAGAAAGGGAAACGTGGA
ATCACCTATCGCAAGCCTAGAAAACGGGGTGGGGTTGCTAAATTTCGAGGCATCAGTCACGAACAAGTCTGCGTATTGGTTGCTCGTGACCATGATAAGA
ACACCGTTTCTAAAGTATCTTGCCGAGGTCGAATCAGCAAAAAGCAAGTGGATAAACTCATTGGTTCAAAGGTTTCGGAATCAAATATTCTTTGTTCCGA
TGCTTGGCGGTCTTACTCGATTTTTGCTAGGGAGAATGGCTTGGAGCATTATCGTATTAAAAGTACCGAAGAGCATGTCAAGAAAGGAATCTACCACATC
CAGAACGTAAATAGCTTTCACAAACGTCTTAAGGATTGGATGGAGCATTTTTGTGGCGTAGCCAGCAAGTATCTGGATAACTATTTAGCATGGTTCAAGT
TCTTAGATGCTAAAGGCTTTGAGAAAACTCAAGCCAACCTCAAGGAAATGCTTTTCACTGCCTGTCTATTTCGGGTTAGGGAAACCTACAAATCTTTGCG
TTTGTCAGAATTCAGGGTCGCCTGAGAGCATTATTAATTATCTTGGGCAAAATCAACACTAGAGTTTAACTAAGCC
GAACACTCTTTGGCTCGATAATTGAGCTTATCTCTCGTTTAAGCTACGACGAAACGGAACGACTTGTCCTTAAAATACAAAATATGCAGAGCAACTCGAC
CCAAGGCAATGCTAGACTGATTAGCGAACTCCGTGAAAAGAAGTTTAGCGAAGGCTTTACTTGCCCTCATTGTAGAGGTTCCCATGTTGTTCGGTTTGGC
AAGTTCAAGGGTCGTCAACGGTATCGATGTAAGGACTGTTCCAAGACTTTTAGCGACTTAACGGCCACTCCTTTAGCAAGAACTCGCTATCCGAATAAGT
GGATTCACTTTATTGACTGTATGCTCCAGGGACTTCCACTTCGTAAATCAGCAGAGATTTTGGACGTTTCCCACGTAACCTTGTTTTACTGGCGACACAA
GTTGTTAACTGCCCTACGCCAGATGGATATTCCTTCATTCAAGGGAATCTTGGAGGCTGACGAAACCTATTTTCTCTATTCAGAGAAAGGGAAACGTGGA
ATCACCTATCGCAAGCCTAGAAAACGGGGTGGGGTTGCTAAATTTCGAGGCATCAGTCACGAACAAGTCTGCGTATTGGTTGCTCGTGACCATGATAAGA
ACACCGTTTCTAAAGTATCTTGCCGAGGTCGAATCAGCAAAAAGCAAGTGGATAAACTCATTGGTTCAAAGGTTTCGGAATCAAATATTCTTTGTTCCGA
TGCTTGGCGGTCTTACTCGATTTTTGCTAGGGAGAATGGCTTGGAGCATTATCGTATTAAAAGTACCGAAGAGCATGTCAAGAAAGGAATCTACCACATC
CAGAACGTAAATAGCTTTCACAAACGTCTTAAGGATTGGATGGAGCATTTTTGTGGCGTAGCCAGCAAGTATCTGGATAACTATTTAGCATGGTTCAAGT
TCTTAGATGCTAAAGGCTTTGAGAAAACTCAAGCCAACCTCAAGGAAATGCTTTTCACTGCCTGTCTATTTCGGGTTAGGGAAACCTACAAATCTTTGCG
TTTGTCAGAATTCAGGGTCGCCTGAGAGCATTATTAATTATCTTGGGCAAAATCAACACTAGAGTTTAACTAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 94 | 1125 | + | No |
Chemistry : DDE
ORF sequence :
MDGTLFGSIIELISRLSYDETERLVLKIQNMQSNSTQGNARLISELREKKFSEGFTCPHCRGSHVVRFGKFKGRQRYRCKDCSKTFSDLTATPLARTRYP
NKWIHFIDCMLQGLPLRKSAEILDVSHVTLFYWRHKLLTALRQMDIPSFKGILEADETYFLYSEKGKRGITYRKPRKRGGVAKFRGISHEQVCVLVARDH
DKNTVSKVSCRGRISKKQVDKLIGSKVSESNILCSDAWRSYSIFARENGLEHYRIKSTEEHVKKGIYHIQNVNSFHKRLKDWMEHFCGVASKYLDNYLAW
FKFLDAKGFEKTQANLKEMLFTACLFRVRETYKSLRLSEFRVA
NKWIHFIDCMLQGLPLRKSAEILDVSHVTLFYWRHKLLTALRQMDIPSFKGILEADETYFLYSEKGKRGITYRKPRKRGGVAKFRGISHEQVCVLVARDH
DKNTVSKVSCRGRISKKQVDKLIGSKVSESNILCSDAWRSYSIFARENGLEHYRIKSTEEHVKKGIYHIQNVNSFHKRLKDWMEHFCGVASKYLDNYLAW
FKFLDAKGFEKTQANLKEMLFTACLFRVRETYKSLRLSEFRVA
Blast result :
Comments
ISDess1 is 77% aa similar to ISBko1.
References
1] ISfinder annotation (2016)
2] Mardanov,A.V., Karnachuk,O.V., Beletsky,A.V., Kadnikov,V.V. and Ravin,N.V. (2015) Direct GenBank submission.
2] Mardanov,A.V., Karnachuk,O.V., Beletsky,A.V., Kadnikov,V.V. and Ravin,N.V. (2015) Direct GenBank submission.