ISDess1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JYNH01000181 ND Desulfosporosinus sp.
Desulfosporosinus sp. I2
DNA section
IS Length : 1176 bp

Ends


IR Length : 19/25

IRL : GGCTTAGTTAAAGAGTGATCTTGATATTTGATACTTATGTCCAAGCCATG
IRR : GGCTTAGTTAAACTCTAGTGTTGATTTTGCCCAAGATAATTAATAATGCT

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGCGATTAATATTTTAAAAACTATAA8

DNA sequence

GGCTTAGTTAAAGAGTGATCTTGATATTTGATACTTATGTCCAAGCCATGTCTTACAATAGAGTTAGGAACCTATTTAAGGAGGACTCTATTCATGGACG
GAACACTCTTTGGCTCGATAATTGAGCTTATCTCTCGTTTAAGCTACGACGAAACGGAACGACTTGTCCTTAAAATACAAAATATGCAGAGCAACTCGAC
CCAAGGCAATGCTAGACTGATTAGCGAACTCCGTGAAAAGAAGTTTAGCGAAGGCTTTACTTGCCCTCATTGTAGAGGTTCCCATGTTGTTCGGTTTGGC
AAGTTCAAGGGTCGTCAACGGTATCGATGTAAGGACTGTTCCAAGACTTTTAGCGACTTAACGGCCACTCCTTTAGCAAGAACTCGCTATCCGAATAAGT
GGATTCACTTTATTGACTGTATGCTCCAGGGACTTCCACTTCGTAAATCAGCAGAGATTTTGGACGTTTCCCACGTAACCTTGTTTTACTGGCGACACAA
GTTGTTAACTGCCCTACGCCAGATGGATATTCCTTCATTCAAGGGAATCTTGGAGGCTGACGAAACCTATTTTCTCTATTCAGAGAAAGGGAAACGTGGA
ATCACCTATCGCAAGCCTAGAAAACGGGGTGGGGTTGCTAAATTTCGAGGCATCAGTCACGAACAAGTCTGCGTATTGGTTGCTCGTGACCATGATAAGA
ACACCGTTTCTAAAGTATCTTGCCGAGGTCGAATCAGCAAAAAGCAAGTGGATAAACTCATTGGTTCAAAGGTTTCGGAATCAAATATTCTTTGTTCCGA
TGCTTGGCGGTCTTACTCGATTTTTGCTAGGGAGAATGGCTTGGAGCATTATCGTATTAAAAGTACCGAAGAGCATGTCAAGAAAGGAATCTACCACATC
CAGAACGTAAATAGCTTTCACAAACGTCTTAAGGATTGGATGGAGCATTTTTGTGGCGTAGCCAGCAAGTATCTGGATAACTATTTAGCATGGTTCAAGT
TCTTAGATGCTAAAGGCTTTGAGAAAACTCAAGCCAACCTCAAGGAAATGCTTTTCACTGCCTGTCTATTTCGGGTTAGGGAAACCTACAAATCTTTGCG
TTTGTCAGAATTCAGGGTCGCCTGAGAGCATTATTAATTATCTTGGGCAAAATCAACACTAGAGTTTAACTAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa941125+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDGTLFGSIIELISRLSYDETERLVLKIQNMQSNSTQGNARLISELREKKFSEGFTCPHCRGSHVVRFGKFKGRQRYRCKDCSKTFSDLTATPLARTRYP
NKWIHFIDCMLQGLPLRKSAEILDVSHVTLFYWRHKLLTALRQMDIPSFKGILEADETYFLYSEKGKRGITYRKPRKRGGVAKFRGISHEQVCVLVARDH
DKNTVSKVSCRGRISKKQVDKLIGSKVSESNILCSDAWRSYSIFARENGLEHYRIKSTEEHVKKGIYHIQNVNSFHKRLKDWMEHFCGVASKYLDNYLAW
FKFLDAKGFEKTQANLKEMLFTACLFRVRETYKSLRLSEFRVA

 

Blast result :
Comments
ISDess1 is 77% aa similar to ISBko1.
References
1] ISfinder annotation (2016)
2] Mardanov,A.V., Karnachuk,O.V., Beletsky,A.V., Kadnikov,V.V. and Ravin,N.V. (2015) Direct GenBank submission.