ISJli1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JFYR01000003 | ND | Janthinobacterium lividum | Janthinobacterium lividum RIT308 |
DNA section
IS Length : 1061 bp
Ends
IR Length : 18/26
IRL : GGCTCTGTCATCGGCAAGCAGGGGAAATGCCGGAATCTTCCCTTGGTTGT
IRR : GGCTATGTCACCGTCAGATGTGGGAACGCGCCCAGCGTTGCTCTCAATAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCCTGTCGACA | AAAAAAAG | CGGCACCGCAG | 8 |
DNA sequence
GGCTCTGTCATCGGCAAGCAGGGGAAATGCCGGAATCTTCCCTTGGTTGTGTTGTCTGACTCTGCATACTCACCACGCAGGGAGCAGATCATGCAGCCAG
CCGAATGGATCAGCTTTATCGCGCAGTTTGCGCAGTTGAACCGACGCCAGCGCCAGGCAGGAATGGCCCTGCTGCGTGGCAACTATCCACACGACGCGAC
CGTCGCGCTGCTGGAAAGTGTGGCCCAGCCGCGATTGGCCTGTCCCGCCTGTCACTCGGCACACCTGCACCGGCACGGCCATGCGCACGGCTTGCAGCGC
TACCGCTGCGTTCCCTGCGGGCGTACCTTCAATGCCTTGACGGGCACGCCGCTGGCCCGCTTGCGCCACAAGGCGCTGTGGCTCGAGTATGCCGATTGCC
TGCTCGACTCATCTTCGGTGCGCCAGGCTGCCAGCCAATTGGGTGTGCACCGCAACACCACGTTTCGCTGGCGTCACCGGTTTTTATCGCTGGCAAAGAC
GGATCGGCCGCATGGCCTGCATGGCATCGCCGAAGCCGACGAGTTATATCTGCTGGAATCGGAAAAGGGATCCAGAAACATGACGCGTCCGCCACGCCGC
CGTGGCGGCCATGCTCACAAACGCGGCATATCCAATGAACAGGTCTGCATCCTGGTGGCGCGAGACCGCACGGGCCAGACCCTCGATTTCGTCACGGGCA
AAGGGGCGCTGACCAAGGCGCAGTTACACCATTGTTTGCTACCCATGATCGACAAGGATGTCTTGCTGGTCACCGATGTCCATGCCGCCTATCGGGCTTT
TGCTCGGGAAGCGGGCATCAGCCACCAGGCCGTCAACTTGCGCGCAGGCATCCGCGTACAGGGCGCCGCCCACGTGCAGAACGTCAATGCTTATCACAGC
CGTTTGCGGCAATGGCTAGGTCCGTTTCACGGCGTGGCGACGCGCTACCTGCCAAATTATCTGGGGTGGCGCTGGATACTCGACGCCGGGCGCATCCGTT
CACCGGAAACGTTATTGAGAGCAACGCTGGGCGCGTTCCCACATCTGACGGTGACATAGCC
CCGAATGGATCAGCTTTATCGCGCAGTTTGCGCAGTTGAACCGACGCCAGCGCCAGGCAGGAATGGCCCTGCTGCGTGGCAACTATCCACACGACGCGAC
CGTCGCGCTGCTGGAAAGTGTGGCCCAGCCGCGATTGGCCTGTCCCGCCTGTCACTCGGCACACCTGCACCGGCACGGCCATGCGCACGGCTTGCAGCGC
TACCGCTGCGTTCCCTGCGGGCGTACCTTCAATGCCTTGACGGGCACGCCGCTGGCCCGCTTGCGCCACAAGGCGCTGTGGCTCGAGTATGCCGATTGCC
TGCTCGACTCATCTTCGGTGCGCCAGGCTGCCAGCCAATTGGGTGTGCACCGCAACACCACGTTTCGCTGGCGTCACCGGTTTTTATCGCTGGCAAAGAC
GGATCGGCCGCATGGCCTGCATGGCATCGCCGAAGCCGACGAGTTATATCTGCTGGAATCGGAAAAGGGATCCAGAAACATGACGCGTCCGCCACGCCGC
CGTGGCGGCCATGCTCACAAACGCGGCATATCCAATGAACAGGTCTGCATCCTGGTGGCGCGAGACCGCACGGGCCAGACCCTCGATTTCGTCACGGGCA
AAGGGGCGCTGACCAAGGCGCAGTTACACCATTGTTTGCTACCCATGATCGACAAGGATGTCTTGCTGGTCACCGATGTCCATGCCGCCTATCGGGCTTT
TGCTCGGGAAGCGGGCATCAGCCACCAGGCCGTCAACTTGCGCGCAGGCATCCGCGTACAGGGCGCCGCCCACGTGCAGAACGTCAATGCTTATCACAGC
CGTTTGCGGCAATGGCTAGGTCCGTTTCACGGCGTGGCGACGCGCTACCTGCCAAATTATCTGGGGTGGCGCTGGATACTCGACGCCGGGCGCATCCGTT
CACCGGAAACGTTATTGAGAGCAACGCTGGGCGCGTTCCCACATCTGACGGTGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 91 | 1059 | + | No |
Chemistry : DDE
ORF sequence :
MQPAEWISFIAQFAQLNRRQRQAGMALLRGNYPHDATVALLESVAQPRLACPACHSAHLHRHGHAHGLQRYRCVPCGRTFNALTGTPLARLRHKALWLEY
ADCLLDSSSVRQAASQLGVHRNTTFRWRHRFLSLAKTDRPHGLHGIAEADELYLLESEKGSRNMTRPPRRRGGHAHKRGISNEQVCILVARDRTGQTLDF
VTGKGALTKAQLHHCLLPMIDKDVLLVTDVHAAYRAFAREAGISHQAVNLRAGIRVQGAAHVQNVNAYHSRLRQWLGPFHGVATRYLPNYLGWRWILDAG
RIRSPETLLRATLGAFPHLTVT
ADCLLDSSSVRQAASQLGVHRNTTFRWRHRFLSLAKTDRPHGLHGIAEADELYLLESEKGSRNMTRPPRRRGGHAHKRGISNEQVCILVARDRTGQTLDF
VTGKGALTKAQLHHCLLPMIDKDVLLVTDVHAAYRAFAREAGISHQAVNLRAGIRVQGAAHVQNVNAYHSRLRQWLGPFHGVATRYLPNYLGWRWILDAG
RIRSPETLLRATLGAFPHLTVT
Blast result :
Comments
ISJli1 is 81% aa similar to ISJsp4.
References
1] ISfinder annotation (2016)
2] Gan,H.Y., Gan,H.M., Savka,M.A., Triassi,A.J., Wheatley,M.S., Smart,L.B., Fabio,E.S. and Hudson,A.O. (2014) Genome Announc 2 (3), e00288-14.
2] Gan,H.Y., Gan,H.M., Savka,M.A., Triassi,A.J., Wheatley,M.S., Smart,L.B., Fabio,E.S. and Hudson,A.O. (2014) Genome Announc 2 (3), e00288-14.