ISJli1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JFYR01000003 ND Janthinobacterium lividum
Janthinobacterium lividum RIT308
DNA section
IS Length : 1061 bp

Ends


IR Length : 18/26

IRL : GGCTCTGTCATCGGCAAGCAGGGGAAATGCCGGAATCTTCCCTTGGTTGT
IRR : GGCTATGTCACCGTCAGATGTGGGAACGCGCCCAGCGTTGCTCTCAATAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTCCTGTCGACAAAAAAAAGCGGCACCGCAG8

DNA sequence

GGCTCTGTCATCGGCAAGCAGGGGAAATGCCGGAATCTTCCCTTGGTTGTGTTGTCTGACTCTGCATACTCACCACGCAGGGAGCAGATCATGCAGCCAG
CCGAATGGATCAGCTTTATCGCGCAGTTTGCGCAGTTGAACCGACGCCAGCGCCAGGCAGGAATGGCCCTGCTGCGTGGCAACTATCCACACGACGCGAC
CGTCGCGCTGCTGGAAAGTGTGGCCCAGCCGCGATTGGCCTGTCCCGCCTGTCACTCGGCACACCTGCACCGGCACGGCCATGCGCACGGCTTGCAGCGC
TACCGCTGCGTTCCCTGCGGGCGTACCTTCAATGCCTTGACGGGCACGCCGCTGGCCCGCTTGCGCCACAAGGCGCTGTGGCTCGAGTATGCCGATTGCC
TGCTCGACTCATCTTCGGTGCGCCAGGCTGCCAGCCAATTGGGTGTGCACCGCAACACCACGTTTCGCTGGCGTCACCGGTTTTTATCGCTGGCAAAGAC
GGATCGGCCGCATGGCCTGCATGGCATCGCCGAAGCCGACGAGTTATATCTGCTGGAATCGGAAAAGGGATCCAGAAACATGACGCGTCCGCCACGCCGC
CGTGGCGGCCATGCTCACAAACGCGGCATATCCAATGAACAGGTCTGCATCCTGGTGGCGCGAGACCGCACGGGCCAGACCCTCGATTTCGTCACGGGCA
AAGGGGCGCTGACCAAGGCGCAGTTACACCATTGTTTGCTACCCATGATCGACAAGGATGTCTTGCTGGTCACCGATGTCCATGCCGCCTATCGGGCTTT
TGCTCGGGAAGCGGGCATCAGCCACCAGGCCGTCAACTTGCGCGCAGGCATCCGCGTACAGGGCGCCGCCCACGTGCAGAACGTCAATGCTTATCACAGC
CGTTTGCGGCAATGGCTAGGTCCGTTTCACGGCGTGGCGACGCGCTACCTGCCAAATTATCTGGGGTGGCGCTGGATACTCGACGCCGGGCGCATCCGTT
CACCGGAAACGTTATTGAGAGCAACGCTGGGCGCGTTCCCACATCTGACGGTGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa911059+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQPAEWISFIAQFAQLNRRQRQAGMALLRGNYPHDATVALLESVAQPRLACPACHSAHLHRHGHAHGLQRYRCVPCGRTFNALTGTPLARLRHKALWLEY
ADCLLDSSSVRQAASQLGVHRNTTFRWRHRFLSLAKTDRPHGLHGIAEADELYLLESEKGSRNMTRPPRRRGGHAHKRGISNEQVCILVARDRTGQTLDF
VTGKGALTKAQLHHCLLPMIDKDVLLVTDVHAAYRAFAREAGISHQAVNLRAGIRVQGAAHVQNVNAYHSRLRQWLGPFHGVATRYLPNYLGWRWILDAG
RIRSPETLLRATLGAFPHLTVT

 

Blast result :
Comments
ISJli1 is 81% aa similar to ISJsp4.
References
1] ISfinder annotation (2016)
2] Gan,H.Y., Gan,H.M., Savka,M.A., Triassi,A.J., Wheatley,M.S., Smart,L.B., Fabio,E.S. and Hudson,A.O. (2014) Genome Announc 2 (3), e00288-14.