ISMmet2

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LUUH01000030 ND Methylomonas methanica
Methylomonas methanica R-45371
DNA section
IS Length : 1040 bp

Ends


IR Length : 22/24

IRL : AGCTCTGTTAGCGTTAATAGTTGAAATTGAACGATCGCTTTTTTGGCTTG
IRR : GGCTCTGTTAGCGTTAACAGTTGATTTGCCCAACGGCGGCGAGCATCCAG

Comments : There is a mismatch on the first position.

Insertion site


Left flankDirect repeatRight flankDR Length
GAAAGTGGCCTTATTTAAAGGGAGTTTG8

DNA sequence

AGCTCTGTTAGCGTTAATAGTTGAAATTGAACGATCGCTTTTTTGGCTTGGTCTCAGCCGACAAGGAGGTAGCGGTATGAACACAAAAAGCTATCGGGAC
TGGCTAAAAGGACTCGATGAACTGACGAGTCATCAGCAACAAAGAGTATTGAGCCGGCTGAACAAGATGGTCTCGGGAGACACGGTTGCCGCCAGACTAG
AACAAGCGGCGCCTCAAGGCTGTCCGCAATGCCAAAGTCACCGACTGGCTCGCTGGGGCCGGCAAGCCGGTTTGCAACGCTACCGTTGTCGCGACTGCGG
CAAGTGTTGCAATGCCTTAACGGGAACACCCTTGGCTCGACTTCGACATAAGGACTGTTGGTTGACTTATAGCCAAGCCATGATTGAAGGGCTGACGGTG
CGAAATGCAGCCTATCGTTGCGGGATCGACAAAACCACGAGCTTTCGCTGGCGACACCGTTTTCTCACCGATGTCGTTGAGTTGAAGGCGACCGGCTTGA
CAGGTATTGTGGAAGCGGACGAAACCTATTTCCCTCTGTCATTCAAAGGCTCACGTCACTTGCCCAGGCCAGCGCATCACCGAGGTCATGACATTCACCA
GCGCGGCACCGGCGAGGATCAAGTACCGGTATTGGTGTTACGCGATCGTCATGGGGCCACGACCGATTTCAAACTGACCCTGGCTTGTCAACGCGAAGAA
GCGCCGATTCTGAGCCAAGTCATCCGCCCAGATTCCATACTCTGTACCGATGGTGGCGCCAGTCTCAAAGGGGCTGCACGCCAAGCCGGTATCGCTCATC
GCGCTTTGAATCTGTCGGCGGGGGTACGGGTGTTGGCTGGGGTTTACCACATTCAAAACGTCAACGCCTACGACAGTCGGCTGAAAAATTGGATGCGGCA
ATTTCATGGGGTCGCCACCAAATATCTGGAAAATTATCTCGGCTGGCGTCGAGGATTGGAGCAATGGGGTGAGCTCGCTACACCTCAAACCTGGATGCTC
GCCGCCGTTGGGCAAATCAACTGTTAACGCTAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
951 bp316 aa771027+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNTKSYRDWLKGLDELTSHQQQRVLSRLNKMVSGDTVAARLEQAAPQGCPQCQSHRLARWGRQAGLQRYRCRDCGKCCNALTGTPLARLRHKDCWLTYSQ
AMIEGLTVRNAAYRCGIDKTTSFRWRHRFLTDVVELKATGLTGIVEADETYFPLSFKGSRHLPRPAHHRGHDIHQRGTGEDQVPVLVLRDRHGATTDFKL
TLACQREEAPILSQVIRPDSILCTDGGASLKGAARQAGIAHRALNLSAGVRVLAGVYHIQNVNAYDSRLKNWMRQFHGVATKYLENYLGWRRGLEQWGEL
ATPQTWMLAAVGQINC

 

Blast result :
Comments
ISMmet2 is 68% aa similar to ISNe7.
References
1] ISfinder annotation (2016)
2] Heylen,K., De Vos,P. and Vekeman,B. (2016) Direct GenBank submission.