ISTme1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CYSB01000029 | ND | Thalassobius mediterraneus | Thalassobius mediterraneus CECT 5118 |
DNA section
IS Length : 1611 bp
Ends
IR Length : 22/24
IRL : CGCGATGTCTGTATCGCGTGTTGGTTGGTTCCGATTTGAAGGATTAGGCC
IRR : CGCGATGTCTGCATTGCGTGTTGGGTAAGCTCGTAATGCGCACGTTCATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACATAGATG | ATATTTTT | TCCCTTATTCG | 8 |
DNA sequence
CGCGATGTCTGTATCGCGTGTTGGTTGGTTCCGATTTGAAGGATTAGGCCAATATCGCCTCTGAGTTTTGCATCAGAGGCGCCATGAAACAGACAACCTT
CGAGAACATCCTGAAACGACTGCACGGCCTGACACCAGATCAGACCGCGATACTGATGCAGTCGGTTCAGGACATGACCGCGCAATCTGCAGCGCATACA
GCCATCGACACGGCGGCAAGGGAGGGTGTTTGCCCGCACTGCGGCTCTTCCCACCGTCAGAAATGGGGACGCACACGCACTGGCGCTCAGCGATACCGGT
GCAATCAGTGCAACAGGACCTTCAATGGCCGAACAGGCAGTTCAATCGCGCATCTGCAACGCATTGATCAGTTCTATCGCGTTCTGGAAGACATGTTCGG
CGACGTAGCCCCCAGTTCCATCCGGCATCTGGCCCGGCAGCTCGGCGTCAACAAAGACACGGTCTGGCGGTGGCGGCAGATCATCCTGCGATCCTTGTCG
CAATCCATCACGCCCCTTTCCGGGATTGTAGAGGTCGATGAGACTTTCGTCCGGGAAAGCCGTAAAGGTAGCCGTGAATGGGTGCGCCATGAGGCTGACC
CGATCAACCACCCAAAGCCACCCCGCCTGCGTTGGTATGAGTATAAATTGCTCGGAGTGCTGAAAGAGCGCGGTCTGAACAAGTGGCAGCTGCCTGTGAT
GACCGCAATAGATCGCGCGGGAAATCGCTATGCAGAAAGGCTTCCTGACCGAAAGGATCCGACGATCATTCAGAGCCTTTCACCGCTTATCTGCCCGGAT
GCGGCTCTGTGTTCTGATGGCTATCCCGCATACGCAAAACTCGCCAAAACCATTGGCATGTCGCATGTCGTGCTGGGCACAACACCCGGCACACGAAAGG
TCAACCAGACGTTTCACATCCAGAATGTGAATGCCCTGCACTCGCACCTGAAAGCGTTCCTTCGCCCCTTCAAAGGGCCATCCACGAAATATTTGGATGG
CTATGTAAATTGGCATTTCGTGCGAAAAACAGTCAGCGCGGACGCGGCCCTAAAGGAGCTATTGGCACCGATTTCTTAGACGGTCCCAGCAGGGCCTACT
GAGAAGGCCAGTCACAAGGCCCCTCCACTTCCGGTCCCATGTCCGTTTCTACCGGAGGAGCCACCGTCGGTTGAACCCTCCGCCTGTCTCATTACTGGAG
GAGCCTTTCGCGCCGCCAAGAGTAGTGCGGCGAATTCTGCCTCGCTTACATAGCCGTCGCTGAGATCCACCCCCGCCGGAACAGTGATCGGCTCTCTGCC
TGAGACTACGATCTCATTTTCATCTGCATCATAGCGGAAACACTTGTTGGCCCAGCAATTCCGACCTTCGTTAATCTGGATCTCGACACCATTCGGACCC
TCTCGCATGGCGTTGTCGGACAGCTTCAAACACCCGGTCAGTGCCAACAATCCCATCGCCGCCATGCCGATTTTCGCAGTTGCCTTCAATCCCACCATGC
TCAAATCCTCAAAATCAATTTTTCCAAATTGGTAGCGCGCAAAAACTGACCGCGCAACCGGAATGAACGTGCGCATTACGAGCTTACCCAACACGCAATG
CAGACATCGCG
CGAGAACATCCTGAAACGACTGCACGGCCTGACACCAGATCAGACCGCGATACTGATGCAGTCGGTTCAGGACATGACCGCGCAATCTGCAGCGCATACA
GCCATCGACACGGCGGCAAGGGAGGGTGTTTGCCCGCACTGCGGCTCTTCCCACCGTCAGAAATGGGGACGCACACGCACTGGCGCTCAGCGATACCGGT
GCAATCAGTGCAACAGGACCTTCAATGGCCGAACAGGCAGTTCAATCGCGCATCTGCAACGCATTGATCAGTTCTATCGCGTTCTGGAAGACATGTTCGG
CGACGTAGCCCCCAGTTCCATCCGGCATCTGGCCCGGCAGCTCGGCGTCAACAAAGACACGGTCTGGCGGTGGCGGCAGATCATCCTGCGATCCTTGTCG
CAATCCATCACGCCCCTTTCCGGGATTGTAGAGGTCGATGAGACTTTCGTCCGGGAAAGCCGTAAAGGTAGCCGTGAATGGGTGCGCCATGAGGCTGACC
CGATCAACCACCCAAAGCCACCCCGCCTGCGTTGGTATGAGTATAAATTGCTCGGAGTGCTGAAAGAGCGCGGTCTGAACAAGTGGCAGCTGCCTGTGAT
GACCGCAATAGATCGCGCGGGAAATCGCTATGCAGAAAGGCTTCCTGACCGAAAGGATCCGACGATCATTCAGAGCCTTTCACCGCTTATCTGCCCGGAT
GCGGCTCTGTGTTCTGATGGCTATCCCGCATACGCAAAACTCGCCAAAACCATTGGCATGTCGCATGTCGTGCTGGGCACAACACCCGGCACACGAAAGG
TCAACCAGACGTTTCACATCCAGAATGTGAATGCCCTGCACTCGCACCTGAAAGCGTTCCTTCGCCCCTTCAAAGGGCCATCCACGAAATATTTGGATGG
CTATGTAAATTGGCATTTCGTGCGAAAAACAGTCAGCGCGGACGCGGCCCTAAAGGAGCTATTGGCACCGATTTCTTAGACGGTCCCAGCAGGGCCTACT
GAGAAGGCCAGTCACAAGGCCCCTCCACTTCCGGTCCCATGTCCGTTTCTACCGGAGGAGCCACCGTCGGTTGAACCCTCCGCCTGTCTCATTACTGGAG
GAGCCTTTCGCGCCGCCAAGAGTAGTGCGGCGAATTCTGCCTCGCTTACATAGCCGTCGCTGAGATCCACCCCCGCCGGAACAGTGATCGGCTCTCTGCC
TGAGACTACGATCTCATTTTCATCTGCATCATAGCGGAAACACTTGTTGGCCCAGCAATTCCGACCTTCGTTAATCTGGATCTCGACACCATTCGGACCC
TCTCGCATGGCGTTGTCGGACAGCTTCAAACACCCGGTCAGTGCCAACAATCCCATCGCCGCCATGCCGATTTTCGCAGTTGCCTTCAATCCCACCATGC
TCAAATCCTCAAAATCAATTTTTCCAAATTGGTAGCGCGCAAAAACTGACCGCGCAACCGGAATGAACGTGCGCATTACGAGCTTACCCAACACGCAATG
CAGACATCGCG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
996 bp | 331 aa | 84 | 1079 | + | No |
Chemistry : DDE
ORF sequence :
MKQTTFENILKRLHGLTPDQTAILMQSVQDMTAQSAAHTAIDTAAREGVCPHCGSSHRQKWGRTRTGAQRYRCNQCNRTFNGRTGSSIAHLQRIDQFYRV
LEDMFGDVAPSSIRHLARQLGVNKDTVWRWRQIILRSLSQSITPLSGIVEVDETFVRESRKGSREWVRHEADPINHPKPPRLRWYEYKLLGVLKERGLNK
WQLPVMTAIDRAGNRYAERLPDRKDPTIIQSLSPLICPDAALCSDGYPAYAKLAKTIGMSHVVLGTTPGTRKVNQTFHIQNVNALHSHLKAFLRPFKGPS
TKYLDGYVNWHFVRKTVSADAALKELLAPIS
LEDMFGDVAPSSIRHLARQLGVNKDTVWRWRQIILRSLSQSITPLSGIVEVDETFVRESRKGSREWVRHEADPINHPKPPRLRWYEYKLLGVLKERGLNK
WQLPVMTAIDRAGNRYAERLPDRKDPTIIQSLSPLICPDAALCSDGYPAYAKLAKTIGMSHVVLGTTPGTRKVNQTFHIQNVNALHSHLKAFLRPFKGPS
TKYLDGYVNWHFVRKTVSADAALKELLAPIS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
387 bp | 128 aa | 1498 | 1112 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MVGLKATAKIGMAAMGLLALTGCLKLSDNAMREGPNGVEIQINEGRNCWANKCFRYDADENEIVVSGREPITVPAGVDLSDGYVSEAEFAALLLAARKAP
PVMRQAEGSTDGGSSGRNGHGTGSGGAL
PVMRQAEGSTDGGSSGRNGHGTGSGGAL
Blast result :
Comments
ISTme1 is 52% aa (transposase) similar to ISPbo1.
References
1] ISfinder annotation (2016)
2] Rodrigo-Torres,Lidia. and Arahal,R.David. (2015) Direct GenBank submission.
2] Rodrigo-Torres,Lidia. and Arahal,R.David. (2015) Direct GenBank submission.