ISTme1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CYSB01000029 ND Thalassobius mediterraneus
Thalassobius mediterraneus CECT 5118
DNA section
IS Length : 1611 bp

Ends


IR Length : 22/24

IRL : CGCGATGTCTGTATCGCGTGTTGGTTGGTTCCGATTTGAAGGATTAGGCC
IRR : CGCGATGTCTGCATTGCGTGTTGGGTAAGCTCGTAATGCGCACGTTCATT

Insertion site


Left flankDirect repeatRight flankDR Length
TACATAGATGATATTTTTTCCCTTATTCG8

DNA sequence

CGCGATGTCTGTATCGCGTGTTGGTTGGTTCCGATTTGAAGGATTAGGCCAATATCGCCTCTGAGTTTTGCATCAGAGGCGCCATGAAACAGACAACCTT
CGAGAACATCCTGAAACGACTGCACGGCCTGACACCAGATCAGACCGCGATACTGATGCAGTCGGTTCAGGACATGACCGCGCAATCTGCAGCGCATACA
GCCATCGACACGGCGGCAAGGGAGGGTGTTTGCCCGCACTGCGGCTCTTCCCACCGTCAGAAATGGGGACGCACACGCACTGGCGCTCAGCGATACCGGT
GCAATCAGTGCAACAGGACCTTCAATGGCCGAACAGGCAGTTCAATCGCGCATCTGCAACGCATTGATCAGTTCTATCGCGTTCTGGAAGACATGTTCGG
CGACGTAGCCCCCAGTTCCATCCGGCATCTGGCCCGGCAGCTCGGCGTCAACAAAGACACGGTCTGGCGGTGGCGGCAGATCATCCTGCGATCCTTGTCG
CAATCCATCACGCCCCTTTCCGGGATTGTAGAGGTCGATGAGACTTTCGTCCGGGAAAGCCGTAAAGGTAGCCGTGAATGGGTGCGCCATGAGGCTGACC
CGATCAACCACCCAAAGCCACCCCGCCTGCGTTGGTATGAGTATAAATTGCTCGGAGTGCTGAAAGAGCGCGGTCTGAACAAGTGGCAGCTGCCTGTGAT
GACCGCAATAGATCGCGCGGGAAATCGCTATGCAGAAAGGCTTCCTGACCGAAAGGATCCGACGATCATTCAGAGCCTTTCACCGCTTATCTGCCCGGAT
GCGGCTCTGTGTTCTGATGGCTATCCCGCATACGCAAAACTCGCCAAAACCATTGGCATGTCGCATGTCGTGCTGGGCACAACACCCGGCACACGAAAGG
TCAACCAGACGTTTCACATCCAGAATGTGAATGCCCTGCACTCGCACCTGAAAGCGTTCCTTCGCCCCTTCAAAGGGCCATCCACGAAATATTTGGATGG
CTATGTAAATTGGCATTTCGTGCGAAAAACAGTCAGCGCGGACGCGGCCCTAAAGGAGCTATTGGCACCGATTTCTTAGACGGTCCCAGCAGGGCCTACT
GAGAAGGCCAGTCACAAGGCCCCTCCACTTCCGGTCCCATGTCCGTTTCTACCGGAGGAGCCACCGTCGGTTGAACCCTCCGCCTGTCTCATTACTGGAG
GAGCCTTTCGCGCCGCCAAGAGTAGTGCGGCGAATTCTGCCTCGCTTACATAGCCGTCGCTGAGATCCACCCCCGCCGGAACAGTGATCGGCTCTCTGCC
TGAGACTACGATCTCATTTTCATCTGCATCATAGCGGAAACACTTGTTGGCCCAGCAATTCCGACCTTCGTTAATCTGGATCTCGACACCATTCGGACCC
TCTCGCATGGCGTTGTCGGACAGCTTCAAACACCCGGTCAGTGCCAACAATCCCATCGCCGCCATGCCGATTTTCGCAGTTGCCTTCAATCCCACCATGC
TCAAATCCTCAAAATCAATTTTTCCAAATTGGTAGCGCGCAAAAACTGACCGCGCAACCGGAATGAACGTGCGCATTACGAGCTTACCCAACACGCAATG
CAGACATCGCG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
996 bp331 aa841079+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKQTTFENILKRLHGLTPDQTAILMQSVQDMTAQSAAHTAIDTAAREGVCPHCGSSHRQKWGRTRTGAQRYRCNQCNRTFNGRTGSSIAHLQRIDQFYRV
LEDMFGDVAPSSIRHLARQLGVNKDTVWRWRQIILRSLSQSITPLSGIVEVDETFVRESRKGSREWVRHEADPINHPKPPRLRWYEYKLLGVLKERGLNK
WQLPVMTAIDRAGNRYAERLPDRKDPTIIQSLSPLICPDAALCSDGYPAYAKLAKTIGMSHVVLGTTPGTRKVNQTFHIQNVNALHSHLKAFLRPFKGPS
TKYLDGYVNWHFVRKTVSADAALKELLAPIS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
387 bp128 aa14981112-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MVGLKATAKIGMAAMGLLALTGCLKLSDNAMREGPNGVEIQINEGRNCWANKCFRYDADENEIVVSGREPITVPAGVDLSDGYVSEAEFAALLLAARKAP
PVMRQAEGSTDGGSSGRNGHGTGSGGAL

 

Blast result :
Comments
ISTme1 is 52% aa (transposase) similar to ISPbo1.
References
1] ISfinder annotation (2016)
2] Rodrigo-Torres,Lidia. and Arahal,R.David. (2015) Direct GenBank submission.