ISCosp3

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP013145 ND Colwellia sp.
Colwellia sp. MT41
DNA section
IS Length : 1029 bp

Ends


IR Length : 15/16

IRL : GGCTATGTCTGAGTAAATTGTTGCAAAGGTACCATACTTAATTTATGTGT
IRR : GGCTATGTCTGAAGTAGCTATTGTGGCATTCGTCCAACAGCTTCAAATAA

Insertion site


Left flankDirect repeatRight flankDR Length
GATAAGCCCCATAAAATAGCCTTAAAGCTC8

DNA sequence

GGCTATGTCTGAGTAAATTGTTGCAAAGGTACCATACTTAATTTATGTGTGAATAACTTCCAAGGTGACACTCATGAATGAACAACAATTTACTCATTTT
TTACAGCAGCTTACATTGTTATCGCCGAGTCAGCGACAACGACTTCATCAGAGACTAGGACAGACTGAATTATCGGCAGAAGAAGTTTTATCAGTTCAGG
CAACGTTGCAACGATGTCCTCACTGTCAGTCAACGTTATTAAAACCATGGGGTTCAAGCCATGGACTGCCCCGTTATCGGTGTGCAACCTGTCAAAAAAC
ATGTAATCCATTAACTAAAACGCCACTGGCTAGATTACGCCAACGCGATAAGTGGCTAACCTATGCTCAAACATTAATTGATGGGTTGAGTATTAGAAAA
GCAGCCAAATTATGCGGTGTTGATAAGAACACAGCATTTCTTTGGCGTCACCGGTTTCTAGAAATCGCTAACACGCATCAAGCGTTGCATGAAGAAGGGA
TTGTTGAAGCTGATGAAACCTTTTTTCTTGAGTCGTTTAAAGGTCAACGCAACTTACCGCGGCCACCAAGAAAGCGTGGAGGAGTGGGTAAAACAAGAGG
AACCAGCGATGATCAAATTCCTGTGCTAGTCGTCAGGGATAGACATAAATCTACCGCGACAGTGATCTTAGCAAAAGTTGATGCCCAGCATGTGGCTGCG
GTTTTAACCCCTCTTGTTGATAAAGATGCGGTACTTTGCACTGATGGTGCAGCAGTATATTCCGCATTTTGTAAAACTAAAGGGATCAAACATGAGGTGA
TCCTTACTAAAGGCCCGAGAACGCGAGGCGCATTTCATATTCAAAACGTCAATGCATTTGATAGCAGGCTTAAAGGGTGGATGAAACGGTTTCACGGTGT
TGCAACCAAGTATTTGGGGAATTACTTAGGATGGAGAAGAATGCTAGAACGTTATTCTCATATAAGCCCAGAGATTTGCTTATTTGAAGCTGTTGGACGA
ATGCCACAATAGCTACTTCAGACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa741012+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNEQQFTHFLQQLTLLSPSQRQRLHQRLGQTELSAEEVLSVQATLQRCPHCQSTLLKPWGSSHGLPRYRCATCQKTCNPLTKTPLARLRQRDKWLTYAQT
LIDGLSIRKAAKLCGVDKNTAFLWRHRFLEIANTHQALHEEGIVEADETFFLESFKGQRNLPRPPRKRGGVGKTRGTSDDQIPVLVVRDRHKSTATVILA
KVDAQHVAAVLTPLVDKDAVLCTDGAAVYSAFCKTKGIKHEVILTKGPRTRGAFHIQNVNAFDSRLKGWMKRFHGVATKYLGNYLGWRRMLERYSHISPE
ICLFEAVGRMPQ

 

Blast result :
Comments
ISCosp3 is 72% aa similar to ISAzvi1.
References
1] ISfinder annotation (2016)
2] Kyaw,T.S., Ugalde,J., Peoples,L., Narasingarao,P., Chastain,R.A., Yayanos,A., Methe,B.A. and Bartlett,D.H. (2015) Direct GenBank submission.