ISCosp3
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP013145 | ND | Colwellia sp. | Colwellia sp. MT41 |
DNA section
IS Length : 1029 bp
Ends
IR Length : 15/16
IRL : GGCTATGTCTGAGTAAATTGTTGCAAAGGTACCATACTTAATTTATGTGT
IRR : GGCTATGTCTGAAGTAGCTATTGTGGCATTCGTCCAACAGCTTCAAATAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATAAGCCCC | ATAAAATA | GCCTTAAAGCTC | 8 |
DNA sequence
GGCTATGTCTGAGTAAATTGTTGCAAAGGTACCATACTTAATTTATGTGTGAATAACTTCCAAGGTGACACTCATGAATGAACAACAATTTACTCATTTT
TTACAGCAGCTTACATTGTTATCGCCGAGTCAGCGACAACGACTTCATCAGAGACTAGGACAGACTGAATTATCGGCAGAAGAAGTTTTATCAGTTCAGG
CAACGTTGCAACGATGTCCTCACTGTCAGTCAACGTTATTAAAACCATGGGGTTCAAGCCATGGACTGCCCCGTTATCGGTGTGCAACCTGTCAAAAAAC
ATGTAATCCATTAACTAAAACGCCACTGGCTAGATTACGCCAACGCGATAAGTGGCTAACCTATGCTCAAACATTAATTGATGGGTTGAGTATTAGAAAA
GCAGCCAAATTATGCGGTGTTGATAAGAACACAGCATTTCTTTGGCGTCACCGGTTTCTAGAAATCGCTAACACGCATCAAGCGTTGCATGAAGAAGGGA
TTGTTGAAGCTGATGAAACCTTTTTTCTTGAGTCGTTTAAAGGTCAACGCAACTTACCGCGGCCACCAAGAAAGCGTGGAGGAGTGGGTAAAACAAGAGG
AACCAGCGATGATCAAATTCCTGTGCTAGTCGTCAGGGATAGACATAAATCTACCGCGACAGTGATCTTAGCAAAAGTTGATGCCCAGCATGTGGCTGCG
GTTTTAACCCCTCTTGTTGATAAAGATGCGGTACTTTGCACTGATGGTGCAGCAGTATATTCCGCATTTTGTAAAACTAAAGGGATCAAACATGAGGTGA
TCCTTACTAAAGGCCCGAGAACGCGAGGCGCATTTCATATTCAAAACGTCAATGCATTTGATAGCAGGCTTAAAGGGTGGATGAAACGGTTTCACGGTGT
TGCAACCAAGTATTTGGGGAATTACTTAGGATGGAGAAGAATGCTAGAACGTTATTCTCATATAAGCCCAGAGATTTGCTTATTTGAAGCTGTTGGACGA
ATGCCACAATAGCTACTTCAGACATAGCC
TTACAGCAGCTTACATTGTTATCGCCGAGTCAGCGACAACGACTTCATCAGAGACTAGGACAGACTGAATTATCGGCAGAAGAAGTTTTATCAGTTCAGG
CAACGTTGCAACGATGTCCTCACTGTCAGTCAACGTTATTAAAACCATGGGGTTCAAGCCATGGACTGCCCCGTTATCGGTGTGCAACCTGTCAAAAAAC
ATGTAATCCATTAACTAAAACGCCACTGGCTAGATTACGCCAACGCGATAAGTGGCTAACCTATGCTCAAACATTAATTGATGGGTTGAGTATTAGAAAA
GCAGCCAAATTATGCGGTGTTGATAAGAACACAGCATTTCTTTGGCGTCACCGGTTTCTAGAAATCGCTAACACGCATCAAGCGTTGCATGAAGAAGGGA
TTGTTGAAGCTGATGAAACCTTTTTTCTTGAGTCGTTTAAAGGTCAACGCAACTTACCGCGGCCACCAAGAAAGCGTGGAGGAGTGGGTAAAACAAGAGG
AACCAGCGATGATCAAATTCCTGTGCTAGTCGTCAGGGATAGACATAAATCTACCGCGACAGTGATCTTAGCAAAAGTTGATGCCCAGCATGTGGCTGCG
GTTTTAACCCCTCTTGTTGATAAAGATGCGGTACTTTGCACTGATGGTGCAGCAGTATATTCCGCATTTTGTAAAACTAAAGGGATCAAACATGAGGTGA
TCCTTACTAAAGGCCCGAGAACGCGAGGCGCATTTCATATTCAAAACGTCAATGCATTTGATAGCAGGCTTAAAGGGTGGATGAAACGGTTTCACGGTGT
TGCAACCAAGTATTTGGGGAATTACTTAGGATGGAGAAGAATGCTAGAACGTTATTCTCATATAAGCCCAGAGATTTGCTTATTTGAAGCTGTTGGACGA
ATGCCACAATAGCTACTTCAGACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 74 | 1012 | + | No |
Chemistry : DDE
ORF sequence :
MNEQQFTHFLQQLTLLSPSQRQRLHQRLGQTELSAEEVLSVQATLQRCPHCQSTLLKPWGSSHGLPRYRCATCQKTCNPLTKTPLARLRQRDKWLTYAQT
LIDGLSIRKAAKLCGVDKNTAFLWRHRFLEIANTHQALHEEGIVEADETFFLESFKGQRNLPRPPRKRGGVGKTRGTSDDQIPVLVVRDRHKSTATVILA
KVDAQHVAAVLTPLVDKDAVLCTDGAAVYSAFCKTKGIKHEVILTKGPRTRGAFHIQNVNAFDSRLKGWMKRFHGVATKYLGNYLGWRRMLERYSHISPE
ICLFEAVGRMPQ
LIDGLSIRKAAKLCGVDKNTAFLWRHRFLEIANTHQALHEEGIVEADETFFLESFKGQRNLPRPPRKRGGVGKTRGTSDDQIPVLVVRDRHKSTATVILA
KVDAQHVAAVLTPLVDKDAVLCTDGAAVYSAFCKTKGIKHEVILTKGPRTRGAFHIQNVNAFDSRLKGWMKRFHGVATKYLGNYLGWRRMLERYSHISPE
ICLFEAVGRMPQ
Blast result :
Comments
ISCosp3 is 72% aa similar to ISAzvi1.
References
1] ISfinder annotation (2016)
2] Kyaw,T.S., Ugalde,J., Peoples,L., Narasingarao,P., Chastain,R.A., Yayanos,A., Methe,B.A. and Bartlett,D.H. (2015) Direct GenBank submission.
2] Kyaw,T.S., Ugalde,J., Peoples,L., Narasingarao,P., Chastain,R.A., Yayanos,A., Methe,B.A. and Bartlett,D.H. (2015) Direct GenBank submission.