ISEnu2
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
JOKH01000001 | ND | Endozoicomonas numazuensis | Endozoicomonas numazuensis DSM 25634 |
DNA section
IS Length : 1038 bp
Ends
IR Length : 23/27
IRL : GGCTATGTTTCGCTAAAGGGTTGACAGGACTAAACTGTCACGAGGTTCTT
IRR : GGCTATGTTGCGCTTAAAGGTTGAAAGCGGAGAAACTCCATAATTTTATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGCTCCAGT | ATTCTTTGC | CATTATCGCA | 9 |
DNA sequence
GGCTATGTTTCGCTAAAGGGTTGACAGGACTAAACTGTCACGAGGTTCTTCAACCGGAGGCTAGGTTATGCAGTCTCAGCAGTTTCAAGAAGTTCTTAAT
GCAATTTCGTTACTGACAAATCAACAGAAAAATATTCTGCTTAATGCACTATCGGATCGACATTCCCCTTCCGATATTGCTGTCTCCATCGAAGAGGCCT
TTATAAAGGCACCAATATGCCCACACTGCGGTTCTGAAGATCTACAGCGGTGGGGTATTCGCAACCAGCGCCAGCGTTTTCGTTGCAAGGATTGCCATAA
AACTTTGAACTCTTTTTCCAAAACACCATTGGCTCGACTCAGGCACCCCGAAAAATGGTCCAGTTATCTTGAAGGAATGACTCATTCTCTCACGCTTCGT
CCGGCTGCCAAGCAGTGCCAAATATCGCTTGGAACTTCATTCCGCTGGCGTCATCGCTTTTTGCAAGCCATTGAGCATGATCAGGCACCAGAGCTTGGTG
GTATAGCGGAAATCGACGAAACATTCTTTCGTGAGTCGTTTAAGGGGCAGAGGAAAGGTCTGCCTAGACCTGCTCGCAAAAGAGGCTCCGATAAGAAATC
TGAATGCAGGAAAGTCCCAGTCATGGTAGCCAGAGATCGCAACTGTCACACTGTAGATGGCATTCTTGATAACGAGAGTGCAGACGAACTTTGTCGTCAT
TTGAATGGTCGAATCAATATTGAAACTGTTGTTTGTGCTGATGCAAGCCTCGCTCACGAGAAGCTTGCGAGGAAGCTGGGATTCACCTTCAAGGAGCTGG
TGACATCATCTGGCAAAAGGGTTTTAGATGGAATCTTTCACTTACAACATGTCAATGCATATCATGGCCATCTTAAGGGCTGGATAGAAGGGATTTTTCA
TGGGGTTGCGACAAAATACTTACCACATTACCTGGGCTGGCGTAGAGCTTTAACCGGGATTCAAACTCTAACACCTGATCGATTGGGTAATAAAATTATG
GAGTTTCTCCGCTTTCAACCTTTAAGCGCAACATAGCC
GCAATTTCGTTACTGACAAATCAACAGAAAAATATTCTGCTTAATGCACTATCGGATCGACATTCCCCTTCCGATATTGCTGTCTCCATCGAAGAGGCCT
TTATAAAGGCACCAATATGCCCACACTGCGGTTCTGAAGATCTACAGCGGTGGGGTATTCGCAACCAGCGCCAGCGTTTTCGTTGCAAGGATTGCCATAA
AACTTTGAACTCTTTTTCCAAAACACCATTGGCTCGACTCAGGCACCCCGAAAAATGGTCCAGTTATCTTGAAGGAATGACTCATTCTCTCACGCTTCGT
CCGGCTGCCAAGCAGTGCCAAATATCGCTTGGAACTTCATTCCGCTGGCGTCATCGCTTTTTGCAAGCCATTGAGCATGATCAGGCACCAGAGCTTGGTG
GTATAGCGGAAATCGACGAAACATTCTTTCGTGAGTCGTTTAAGGGGCAGAGGAAAGGTCTGCCTAGACCTGCTCGCAAAAGAGGCTCCGATAAGAAATC
TGAATGCAGGAAAGTCCCAGTCATGGTAGCCAGAGATCGCAACTGTCACACTGTAGATGGCATTCTTGATAACGAGAGTGCAGACGAACTTTGTCGTCAT
TTGAATGGTCGAATCAATATTGAAACTGTTGTTTGTGCTGATGCAAGCCTCGCTCACGAGAAGCTTGCGAGGAAGCTGGGATTCACCTTCAAGGAGCTGG
TGACATCATCTGGCAAAAGGGTTTTAGATGGAATCTTTCACTTACAACATGTCAATGCATATCATGGCCATCTTAAGGGCTGGATAGAAGGGATTTTTCA
TGGGGTTGCGACAAAATACTTACCACATTACCTGGGCTGGCGTAGAGCTTTAACCGGGATTCAAACTCTAACACCTGATCGATTGGGTAATAAAATTATG
GAGTTTCTCCGCTTTCAACCTTTAAGCGCAACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 68 | 1036 | + | No |
Chemistry : DDE
ORF sequence :
MQSQQFQEVLNAISLLTNQQKNILLNALSDRHSPSDIAVSIEEAFIKAPICPHCGSEDLQRWGIRNQRQRFRCKDCHKTLNSFSKTPLARLRHPEKWSSY
LEGMTHSLTLRPAAKQCQISLGTSFRWRHRFLQAIEHDQAPELGGIAEIDETFFRESFKGQRKGLPRPARKRGSDKKSECRKVPVMVARDRNCHTVDGIL
DNESADELCRHLNGRINIETVVCADASLAHEKLARKLGFTFKELVTSSGKRVLDGIFHLQHVNAYHGHLKGWIEGIFHGVATKYLPHYLGWRRALTGIQT
LTPDRLGNKIMEFLRFQPLSAT
LEGMTHSLTLRPAAKQCQISLGTSFRWRHRFLQAIEHDQAPELGGIAEIDETFFRESFKGQRKGLPRPARKRGSDKKSECRKVPVMVARDRNCHTVDGIL
DNESADELCRHLNGRINIETVVCADASLAHEKLARKLGFTFKELVTSSGKRVLDGIFHLQHVNAYHGHLKGWIEGIFHGVATKYLPHYLGWRRALTGIQT
LTPDRLGNKIMEFLRFQPLSAT
Blast result :
Comments
ISEnu2 is 60% aa similar to ISPesp2.
References
1] ISfinder annotation (2016)
2] Neave,M.J., Michell,C.T., Apprill,A. and Voolstra,C.R. (2014) Genome Announc 2 (4), e00802-14.
2] Neave,M.J., Michell,C.T., Apprill,A. and Voolstra,C.R. (2014) Genome Announc 2 (4), e00802-14.