ISEnu2

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JOKH01000001 ND Endozoicomonas numazuensis
Endozoicomonas numazuensis DSM 25634
DNA section
IS Length : 1038 bp

Ends


IR Length : 23/27

IRL : GGCTATGTTTCGCTAAAGGGTTGACAGGACTAAACTGTCACGAGGTTCTT
IRR : GGCTATGTTGCGCTTAAAGGTTGAAAGCGGAGAAACTCCATAATTTTATT

Insertion site


Left flankDirect repeatRight flankDR Length
CTGCTCCAGTATTCTTTGCCATTATCGCA9

DNA sequence

GGCTATGTTTCGCTAAAGGGTTGACAGGACTAAACTGTCACGAGGTTCTTCAACCGGAGGCTAGGTTATGCAGTCTCAGCAGTTTCAAGAAGTTCTTAAT
GCAATTTCGTTACTGACAAATCAACAGAAAAATATTCTGCTTAATGCACTATCGGATCGACATTCCCCTTCCGATATTGCTGTCTCCATCGAAGAGGCCT
TTATAAAGGCACCAATATGCCCACACTGCGGTTCTGAAGATCTACAGCGGTGGGGTATTCGCAACCAGCGCCAGCGTTTTCGTTGCAAGGATTGCCATAA
AACTTTGAACTCTTTTTCCAAAACACCATTGGCTCGACTCAGGCACCCCGAAAAATGGTCCAGTTATCTTGAAGGAATGACTCATTCTCTCACGCTTCGT
CCGGCTGCCAAGCAGTGCCAAATATCGCTTGGAACTTCATTCCGCTGGCGTCATCGCTTTTTGCAAGCCATTGAGCATGATCAGGCACCAGAGCTTGGTG
GTATAGCGGAAATCGACGAAACATTCTTTCGTGAGTCGTTTAAGGGGCAGAGGAAAGGTCTGCCTAGACCTGCTCGCAAAAGAGGCTCCGATAAGAAATC
TGAATGCAGGAAAGTCCCAGTCATGGTAGCCAGAGATCGCAACTGTCACACTGTAGATGGCATTCTTGATAACGAGAGTGCAGACGAACTTTGTCGTCAT
TTGAATGGTCGAATCAATATTGAAACTGTTGTTTGTGCTGATGCAAGCCTCGCTCACGAGAAGCTTGCGAGGAAGCTGGGATTCACCTTCAAGGAGCTGG
TGACATCATCTGGCAAAAGGGTTTTAGATGGAATCTTTCACTTACAACATGTCAATGCATATCATGGCCATCTTAAGGGCTGGATAGAAGGGATTTTTCA
TGGGGTTGCGACAAAATACTTACCACATTACCTGGGCTGGCGTAGAGCTTTAACCGGGATTCAAACTCTAACACCTGATCGATTGGGTAATAAAATTATG
GAGTTTCTCCGCTTTCAACCTTTAAGCGCAACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa681036+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQSQQFQEVLNAISLLTNQQKNILLNALSDRHSPSDIAVSIEEAFIKAPICPHCGSEDLQRWGIRNQRQRFRCKDCHKTLNSFSKTPLARLRHPEKWSSY
LEGMTHSLTLRPAAKQCQISLGTSFRWRHRFLQAIEHDQAPELGGIAEIDETFFRESFKGQRKGLPRPARKRGSDKKSECRKVPVMVARDRNCHTVDGIL
DNESADELCRHLNGRINIETVVCADASLAHEKLARKLGFTFKELVTSSGKRVLDGIFHLQHVNAYHGHLKGWIEGIFHGVATKYLPHYLGWRRALTGIQT
LTPDRLGNKIMEFLRFQPLSAT

 

Blast result :
Comments
ISEnu2 is 60% aa similar to ISPesp2.
References
1] ISfinder annotation (2016)
2] Neave,M.J., Michell,C.T., Apprill,A. and Voolstra,C.R. (2014) Genome Announc 2 (4), e00802-14.