ISOar1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP003742 ND Octadecabacter arcticus
Octadecabacter arcticus 238
Octadecabacter arcticus 238 plasmid pOA238_118
DNA section
IS Length : 1044 bp

Ends


IR Length : 25

IRL : GGCTCAATTCGCATTAGCTATGCACTCCCCAATGATATAGAACAAAAAGT
IRR : GGCTCAATTCGCATTAGCTATGCACATGGTCTAACCGGCAGGATACCTGC

Insertion site


Left flankDirect repeatRight flankDR Length
ACAAAGATCATAAAAAATATATGATTCA8
ATGTTGGATAGT TTGAAAATTTGCAAAAT GGACGGCAATG0
TCTATGGTCTTACAACAATGACCGCCCG8
TTCAAATGGAGTTATATCTTTGGTGCCGCCGT8

DNA sequence

GGCTCAATTCGCATTAGCTATGCACTCCCCAATGATATAGAACAAAAAGTGAACGCAGGAGGCGCGCATGGACCATCACGACTATCTGGCCTGGCTATCT
GAGATTGATGATCTGTCCTCGTACCAGCGGATTGCAACGGTTCGGTTGCTGGCTGGTCAGCCGTCGCTGGAAGCCGTGATCGGACTGTTGGAGGAGCGGA
TCGGGACGGCACGAAACTGTCCGCATTGTGCGGCGGGCGGGGCTGTGATCCGAGGCCGCTCTAACGGGCTGAAGCGGTATTTTTGCAAGATCTGCAGCAA
AACCTTCAACGCCCTAACTGGGACGCCGTTAGCTCGGCTGCGACACAAAGATTGCTGGACAGAATTTGCTGGGTCATTAAGCGATGGCGACACGGTGAAG
ACCTCGGCGGCGCGCTGCGGGGTGGCCAGCAGCACGGCTTTTCGCTGGCGTCACCGCTTCCTGCGGGCTGTGACGGCTGGCGCGATCAAACTGCGCGGTA
TCGTCGAGGCCGATGAGACGTTTGTCTTGAGCAGTCGTAAAGGCGAACGGAACCTCGATCGCAAGGCCCGCAGGCGCGGCGGCAAGGCGTCCAAACGGGG
GGTATCGCATGAGCAAGTTCCAGTTTTGGTGGCCGCCGACCGCTCCGGCGCGACCGTCAGCGCCATATTGCCGGCGGTGTCTGCCGCTCATTTGCAAGCG
GTTTTGCAGCCAGTTCTTGACCAGGACGCCCTGCTGGTCACTGACGGCTGCACCAGTTATCCGCCCTGCGCCGCCGCGATGGGCATCAGCCATGAGGCGC
TCAACCAAACCGCTGGCGAGCGCGTCCGGGGAGAACTGCACATCCAGACCGTCAACAGCCGCCATGAGCGGCTCAAGTCCTTTCTTCGTCGCCATCGTGG
CGTCGCCACCAAGTATCTCGACAGCTATCTCAGATGGTTTCATCTCGCAGTGCTTCCAAGGCAGCCAACACCACGCGCAGTCCTCGCCGCAGCAGCAGGT
ATCCTGCCGGTTAGACCATGTGCATAGCTAATGCGAATTGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
960 bp319 aa681027+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDHHDYLAWLSEIDDLSSYQRIATVRLLAGQPSLEAVIGLLEERIGTARNCPHCAAGGAVIRGRSNGLKRYFCKICSKTFNALTGTPLARLRHKDCWTEF
AGSLSDGDTVKTSAARCGVASSTAFRWRHRFLRAVTAGAIKLRGIVEADETFVLSSRKGERNLDRKARRRGGKASKRGVSHEQVPVLVAADRSGATVSAI
LPAVSAAHLQAVLQPVLDQDALLVTDGCTSYPPCAAAMGISHEALNQTAGERVRGELHIQTVNSRHERLKSFLRRHRGVATKYLDSYLRWFHLAVLPRQP
TPRAVLAAAAGILPVRPCA

 

Blast result :
Comments
ISOar1 is 63% aa similar to ISRso22.
References
1] Isfinder annotation (2016)
2] Vollmers,J., Voget,S., Dietrich,S., Gollnow,K., Smits,M., Meyer,K., Brinkhoff,T., Simon,M. and Daniel,R. (2013) PLoS ONE 8 (5), E63422.