ISBeb2
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MEQN01000097 | ND | Betaproteobacteria bacterium | Betaproteobacteria bacterium RBG_16_58_11 |
DNA section
IS Length : 1081 bp
Ends
IR Length : 20/23
IRL : GGCTGTTTTCGCAAATGCTGTTGGTGGCTCACCTGGTGAGCCTGCCGGCG
IRR : GGCTGTTTTCGCAAACCATGTTGTTAAGCCACCCCACCGAGCGCCATCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGTTTATTTTC | AAAATAAAAC | 0 |
DNA sequence
GGCTGTTTTCGCAAATGCTGTTGGTGGCTCACCTGGTGAGCCTGCCGGCGCGGATACTGGGTGGCATGGCGCAGGTGCGCCGAATCATCCAGGAGTCTGA
AATGAGGAAATTCGAGTTGAAACGGATCACCGCCGCCTTGCGGCAGATGAGTCCCACGCAACGCAAAGTCGTGGCGACGGAATTGGCTGCACTGGACACG
CAACCGGCATCGACGGTGCTCGTCGAGAGCCGTTTTACTGCTGCGGCCACCTGCCCGCATTGCAAGGCTTGTCGCGCGATTCGCCACGGCCACGCCAACG
GGCTGCAGCGCTATCGCTGCCGGGATTGCCACAAGACGTTCAGCGCCCTGACCGGCACGCCATTGAGCCGGCTCCACAAGCGCGGCAAATGGCTCGATCA
GGCGGCGGCATTGCAGGCTGGGCTGACGCTGCATCAAGTGGCCGAGGCCCTGAACATCCACGTGAGCACCGCACATCGGTGGCGCCACCGTTTCCTGGCA
TTGCCAGAGCACATTCAGGCCCGGAGCTTGTGCGGAATCGCCGAGGCAGACGAAACGGTGTTCCTGCTCTCCTTCAAGGGAAAGCGGAGCGGACTGGGCC
GGAAAGCGCGCAAGCGCGGTGGCAAAGCCAGTAAGCGAGGCATGTCGAACGAGCAGGTGCCAGTGCTGGTGGCCCGTGATCGTGCTGGCGCCACCATGGA
TTGCGTCCTCGCGGCCATCGACATGCGGACACTGTCCGCTGCGTTGAAACCGGTTCTGGCCAAGGACGCCGTCCTTTGCACCGACGGCAGCCCGGCGCTG
TCCGCAGCGGCGCGTGATATTGGTGTCGAGCATCACGCCATCAACCTCTCGGCGGGCATCCACGTCGACGGTGCCTGGCACGTGCAGAACGTCAATGCGT
ATCACAGCCGCCTCAAGAACTGGATCCGAAGGTTCCGCGGCGTGGCAACGTGTTACCTGCCGAAGTACCTCGGGTGGTTCCGCGCGCTGGATCGGGAATC
GGCAAGTGGCTTGAAACCCGCGCAGTGGCTCGCGATGGCGCTCGGTGGGGTGGCTTAACAACATGGTTTGCGAAAACAGCC
AATGAGGAAATTCGAGTTGAAACGGATCACCGCCGCCTTGCGGCAGATGAGTCCCACGCAACGCAAAGTCGTGGCGACGGAATTGGCTGCACTGGACACG
CAACCGGCATCGACGGTGCTCGTCGAGAGCCGTTTTACTGCTGCGGCCACCTGCCCGCATTGCAAGGCTTGTCGCGCGATTCGCCACGGCCACGCCAACG
GGCTGCAGCGCTATCGCTGCCGGGATTGCCACAAGACGTTCAGCGCCCTGACCGGCACGCCATTGAGCCGGCTCCACAAGCGCGGCAAATGGCTCGATCA
GGCGGCGGCATTGCAGGCTGGGCTGACGCTGCATCAAGTGGCCGAGGCCCTGAACATCCACGTGAGCACCGCACATCGGTGGCGCCACCGTTTCCTGGCA
TTGCCAGAGCACATTCAGGCCCGGAGCTTGTGCGGAATCGCCGAGGCAGACGAAACGGTGTTCCTGCTCTCCTTCAAGGGAAAGCGGAGCGGACTGGGCC
GGAAAGCGCGCAAGCGCGGTGGCAAAGCCAGTAAGCGAGGCATGTCGAACGAGCAGGTGCCAGTGCTGGTGGCCCGTGATCGTGCTGGCGCCACCATGGA
TTGCGTCCTCGCGGCCATCGACATGCGGACACTGTCCGCTGCGTTGAAACCGGTTCTGGCCAAGGACGCCGTCCTTTGCACCGACGGCAGCCCGGCGCTG
TCCGCAGCGGCGCGTGATATTGGTGTCGAGCATCACGCCATCAACCTCTCGGCGGGCATCCACGTCGACGGTGCCTGGCACGTGCAGAACGTCAATGCGT
ATCACAGCCGCCTCAAGAACTGGATCCGAAGGTTCCGCGGCGTGGCAACGTGTTACCTGCCGAAGTACCTCGGGTGGTTCCGCGCGCTGGATCGGGAATC
GGCAAGTGGCTTGAAACCCGCGCAGTGGCTCGCGATGGCGCTCGGTGGGGTGGCTTAACAACATGGTTTGCGAAAACAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 102 | 1058 | + | No |
Chemistry : DDE
ORF sequence :
MRKFELKRITAALRQMSPTQRKVVATELAALDTQPASTVLVESRFTAAATCPHCKACRAIRHGHANGLQRYRCRDCHKTFSALTGTPLSRLHKRGKWLDQ
AAALQAGLTLHQVAEALNIHVSTAHRWRHRFLALPEHIQARSLCGIAEADETVFLLSFKGKRSGLGRKARKRGGKASKRGMSNEQVPVLVARDRAGATMD
CVLAAIDMRTLSAALKPVLAKDAVLCTDGSPALSAAARDIGVEHHAINLSAGIHVDGAWHVQNVNAYHSRLKNWIRRFRGVATCYLPKYLGWFRALDRES
ASGLKPAQWLAMALGGVA
AAALQAGLTLHQVAEALNIHVSTAHRWRHRFLALPEHIQARSLCGIAEADETVFLLSFKGKRSGLGRKARKRGGKASKRGMSNEQVPVLVARDRAGATMD
CVLAAIDMRTLSAALKPVLAKDAVLCTDGSPALSAAARDIGVEHHAINLSAGIHVDGAWHVQNVNAYHSRLKNWIRRFRGVATCYLPKYLGWFRALDRES
ASGLKPAQWLAMALGGVA
Blast result :
Comments
ISBeb2 is 63% aa similar to ISRso22.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.