ISBeb2

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MEQN01000097 ND Betaproteobacteria bacterium
Betaproteobacteria bacterium RBG_16_58_11
DNA section
IS Length : 1081 bp

Ends


IR Length : 20/23

IRL : GGCTGTTTTCGCAAATGCTGTTGGTGGCTCACCTGGTGAGCCTGCCGGCG
IRR : GGCTGTTTTCGCAAACCATGTTGTTAAGCCACCCCACCGAGCGCCATCGC

Insertion site


Left flankDirect repeatRight flankDR Length
AGAGTTTATTTTCAAAATAAAAC0

DNA sequence

GGCTGTTTTCGCAAATGCTGTTGGTGGCTCACCTGGTGAGCCTGCCGGCGCGGATACTGGGTGGCATGGCGCAGGTGCGCCGAATCATCCAGGAGTCTGA
AATGAGGAAATTCGAGTTGAAACGGATCACCGCCGCCTTGCGGCAGATGAGTCCCACGCAACGCAAAGTCGTGGCGACGGAATTGGCTGCACTGGACACG
CAACCGGCATCGACGGTGCTCGTCGAGAGCCGTTTTACTGCTGCGGCCACCTGCCCGCATTGCAAGGCTTGTCGCGCGATTCGCCACGGCCACGCCAACG
GGCTGCAGCGCTATCGCTGCCGGGATTGCCACAAGACGTTCAGCGCCCTGACCGGCACGCCATTGAGCCGGCTCCACAAGCGCGGCAAATGGCTCGATCA
GGCGGCGGCATTGCAGGCTGGGCTGACGCTGCATCAAGTGGCCGAGGCCCTGAACATCCACGTGAGCACCGCACATCGGTGGCGCCACCGTTTCCTGGCA
TTGCCAGAGCACATTCAGGCCCGGAGCTTGTGCGGAATCGCCGAGGCAGACGAAACGGTGTTCCTGCTCTCCTTCAAGGGAAAGCGGAGCGGACTGGGCC
GGAAAGCGCGCAAGCGCGGTGGCAAAGCCAGTAAGCGAGGCATGTCGAACGAGCAGGTGCCAGTGCTGGTGGCCCGTGATCGTGCTGGCGCCACCATGGA
TTGCGTCCTCGCGGCCATCGACATGCGGACACTGTCCGCTGCGTTGAAACCGGTTCTGGCCAAGGACGCCGTCCTTTGCACCGACGGCAGCCCGGCGCTG
TCCGCAGCGGCGCGTGATATTGGTGTCGAGCATCACGCCATCAACCTCTCGGCGGGCATCCACGTCGACGGTGCCTGGCACGTGCAGAACGTCAATGCGT
ATCACAGCCGCCTCAAGAACTGGATCCGAAGGTTCCGCGGCGTGGCAACGTGTTACCTGCCGAAGTACCTCGGGTGGTTCCGCGCGCTGGATCGGGAATC
GGCAAGTGGCTTGAAACCCGCGCAGTGGCTCGCGATGGCGCTCGGTGGGGTGGCTTAACAACATGGTTTGCGAAAACAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa1021058+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKFELKRITAALRQMSPTQRKVVATELAALDTQPASTVLVESRFTAAATCPHCKACRAIRHGHANGLQRYRCRDCHKTFSALTGTPLSRLHKRGKWLDQ
AAALQAGLTLHQVAEALNIHVSTAHRWRHRFLALPEHIQARSLCGIAEADETVFLLSFKGKRSGLGRKARKRGGKASKRGMSNEQVPVLVARDRAGATMD
CVLAAIDMRTLSAALKPVLAKDAVLCTDGSPALSAAARDIGVEHHAINLSAGIHVDGAWHVQNVNAYHSRLKNWIRRFRGVATCYLPKYLGWFRALDRES
ASGLKPAQWLAMALGGVA

 

Blast result :
Comments
ISBeb2 is 63% aa similar to ISRso22.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016) Nat Commun 7, 13219.