ISCasa1

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ANHY01000020 ND Caenispirillum salinarum
Caenispirillum salinarum AK4
DNA section
IS Length : 1190 bp

Ends


IR Length : 24/27

IRL : GGCGCAATTCTACTTCGATGGGGATGGGCCCCTCAGCAGGCTTGGAACGC
IRR : GGCGCAATTCTACATGAATGGGGATGGCGGCATTCGGCGGCGTTCAAGCG

Insertion site


Left flankDirect repeatRight flankDR Length
TCCTACGGCACAGACAAACCGAAATGCTGCCGCCCCGT8

DNA sequence

GGCGCAATTCTACTTCGATGGGGATGGGCCCCTCAGCAGGCTTGGAACGCCCGTTGCGCGGGGGTAAGCTGCTGGCCTTCTGACGGAGGCGGAGCCATGG
ATGACGCGCAGTTTGAAGTGCTGAAAGCGGCCATAGCCAACGAACTCACGGCTGCGCAATGCGTGGAACTGGAGGGTGTGGTTCGAGAGGTGTCCAGCCG
CCGTGTTGGCGAAACGACCCTTCTTCTGCGGACGGAGGCTCTCGACGGCGATCGCGTTTGCCCCCGCTGCGGCAACACGCGCATCGTCAAGAACGGCCTC
GACCACCTGGGCCGCCAGCGGTTCCGCTGCGTCAAGCACGATGATGATGAGGAGGAACGCTGCGGTCGCGGCTTCAACGTGCTGACGGGAACGCCCTTCG
CCCGCATGCGGAAGCCCGAGAAGTGGTTGGCCTACGCTCGCCTGATGATGCGGAGCGCCTCGATCACCGACATCCATGAAAGCGGGATCGGCATTTCGCG
CCTTACCGCCTGGCGCTGGCGGCATCGTTTCCTGGCTCTTCCAACGACTCTCCAGGCGGAGCGCCTCGACGGCATCATCGAGGTGGACGAAACGTACTTT
CGCTCATCCTACAAGGGCTCTCGGGCGTGGAAGGAAGGCCGTCCCCCCGAGAACCGACCGCCACGCTATAGGGGCGGACCCGCGAAGAGGCGCGGCCTGT
CACGTGAGCAGATCCCTGTGCTGACGGCCGTTGACCGAAGTGGCGGCGTGGTGGAAGGCGTGATGATGCGCCGTGCCGCCAGTGTCGCGCGCACCATGCT
TCTCGGCCGCATTGCGGAGGGAGCGGTTCCTTGTTCCGACGGATGGGCCGCTTACCCGCAGATCGCCGAGGCATGCGGTGCCGATCATCGCTTGGTGGAA
GCGCCGAGAGACGACTGGCTGGTGCGGGCGCTTGGAACAGGTCCTCGCCGCCCAGGCCGCATGGGGCTTGGGCGCATCAACGCCCACCATGAACGGCTCA
AAGCCTTCATGAACATCGTCCTCCGCGGGGTATCGACGAAGTACCTGCCCGCGTACCTGGGGTGGCTGCGCTTCAGGCGGCAGCCTGGGTTCAGCCCAGA
GGCGCTGATCCGCCAACCTCTTCTCCCTCAAGCGGGATAGCGCTTGAACGCCGCCGAATGCCGCCATCCCCATTCATGTAGAATTGCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa971140+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDDAQFEVLKAAIANELTAAQCVELEGVVREVSSRRVGETTLLLRTEALDGDRVCPRCGNTRIVKNGLDHLGRQRFRCVKHDDDEEERCGRGFNVLTGTP
FARMRKPEKWLAYARLMMRSASITDIHESGIGISRLTAWRWRHRFLALPTTLQAERLDGIIEVDETYFRSSYKGSRAWKEGRPPENRPPRYRGGPAKRRG
LSREQIPVLTAVDRSGGVVEGVMMRRAASVARTMLLGRIAEGAVPCSDGWAAYPQIAEACGADHRLVEAPRDDWLVRALGTGPRRPGRMGLGRINAHHER
LKAFMNIVLRGVSTKYLPAYLGWLRFRRQPGFSPEALIRQPLLPQAG

 

Blast result :
Comments
ISCasa1 is 68% aa similar to ISPla1.
References
1] ISfinder annotation (2016)
2] Khatri,I., Singh,A., Korpole,S., Pinnaka,A.K. and Subramanian,S. (2013) Genome Announc 1 (1), E00199-12 .