ISCasa1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ANHY01000020 | ND | Caenispirillum salinarum | Caenispirillum salinarum AK4 |
DNA section
IS Length : 1190 bp
Ends
IR Length : 24/27
IRL : GGCGCAATTCTACTTCGATGGGGATGGGCCCCTCAGCAGGCTTGGAACGC
IRR : GGCGCAATTCTACATGAATGGGGATGGCGGCATTCGGCGGCGTTCAAGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCTACGGCACAGACA | AACCGAAA | TGCTGCCGCCCCGT | 8 |
DNA sequence
GGCGCAATTCTACTTCGATGGGGATGGGCCCCTCAGCAGGCTTGGAACGCCCGTTGCGCGGGGGTAAGCTGCTGGCCTTCTGACGGAGGCGGAGCCATGG
ATGACGCGCAGTTTGAAGTGCTGAAAGCGGCCATAGCCAACGAACTCACGGCTGCGCAATGCGTGGAACTGGAGGGTGTGGTTCGAGAGGTGTCCAGCCG
CCGTGTTGGCGAAACGACCCTTCTTCTGCGGACGGAGGCTCTCGACGGCGATCGCGTTTGCCCCCGCTGCGGCAACACGCGCATCGTCAAGAACGGCCTC
GACCACCTGGGCCGCCAGCGGTTCCGCTGCGTCAAGCACGATGATGATGAGGAGGAACGCTGCGGTCGCGGCTTCAACGTGCTGACGGGAACGCCCTTCG
CCCGCATGCGGAAGCCCGAGAAGTGGTTGGCCTACGCTCGCCTGATGATGCGGAGCGCCTCGATCACCGACATCCATGAAAGCGGGATCGGCATTTCGCG
CCTTACCGCCTGGCGCTGGCGGCATCGTTTCCTGGCTCTTCCAACGACTCTCCAGGCGGAGCGCCTCGACGGCATCATCGAGGTGGACGAAACGTACTTT
CGCTCATCCTACAAGGGCTCTCGGGCGTGGAAGGAAGGCCGTCCCCCCGAGAACCGACCGCCACGCTATAGGGGCGGACCCGCGAAGAGGCGCGGCCTGT
CACGTGAGCAGATCCCTGTGCTGACGGCCGTTGACCGAAGTGGCGGCGTGGTGGAAGGCGTGATGATGCGCCGTGCCGCCAGTGTCGCGCGCACCATGCT
TCTCGGCCGCATTGCGGAGGGAGCGGTTCCTTGTTCCGACGGATGGGCCGCTTACCCGCAGATCGCCGAGGCATGCGGTGCCGATCATCGCTTGGTGGAA
GCGCCGAGAGACGACTGGCTGGTGCGGGCGCTTGGAACAGGTCCTCGCCGCCCAGGCCGCATGGGGCTTGGGCGCATCAACGCCCACCATGAACGGCTCA
AAGCCTTCATGAACATCGTCCTCCGCGGGGTATCGACGAAGTACCTGCCCGCGTACCTGGGGTGGCTGCGCTTCAGGCGGCAGCCTGGGTTCAGCCCAGA
GGCGCTGATCCGCCAACCTCTTCTCCCTCAAGCGGGATAGCGCTTGAACGCCGCCGAATGCCGCCATCCCCATTCATGTAGAATTGCGCC
ATGACGCGCAGTTTGAAGTGCTGAAAGCGGCCATAGCCAACGAACTCACGGCTGCGCAATGCGTGGAACTGGAGGGTGTGGTTCGAGAGGTGTCCAGCCG
CCGTGTTGGCGAAACGACCCTTCTTCTGCGGACGGAGGCTCTCGACGGCGATCGCGTTTGCCCCCGCTGCGGCAACACGCGCATCGTCAAGAACGGCCTC
GACCACCTGGGCCGCCAGCGGTTCCGCTGCGTCAAGCACGATGATGATGAGGAGGAACGCTGCGGTCGCGGCTTCAACGTGCTGACGGGAACGCCCTTCG
CCCGCATGCGGAAGCCCGAGAAGTGGTTGGCCTACGCTCGCCTGATGATGCGGAGCGCCTCGATCACCGACATCCATGAAAGCGGGATCGGCATTTCGCG
CCTTACCGCCTGGCGCTGGCGGCATCGTTTCCTGGCTCTTCCAACGACTCTCCAGGCGGAGCGCCTCGACGGCATCATCGAGGTGGACGAAACGTACTTT
CGCTCATCCTACAAGGGCTCTCGGGCGTGGAAGGAAGGCCGTCCCCCCGAGAACCGACCGCCACGCTATAGGGGCGGACCCGCGAAGAGGCGCGGCCTGT
CACGTGAGCAGATCCCTGTGCTGACGGCCGTTGACCGAAGTGGCGGCGTGGTGGAAGGCGTGATGATGCGCCGTGCCGCCAGTGTCGCGCGCACCATGCT
TCTCGGCCGCATTGCGGAGGGAGCGGTTCCTTGTTCCGACGGATGGGCCGCTTACCCGCAGATCGCCGAGGCATGCGGTGCCGATCATCGCTTGGTGGAA
GCGCCGAGAGACGACTGGCTGGTGCGGGCGCTTGGAACAGGTCCTCGCCGCCCAGGCCGCATGGGGCTTGGGCGCATCAACGCCCACCATGAACGGCTCA
AAGCCTTCATGAACATCGTCCTCCGCGGGGTATCGACGAAGTACCTGCCCGCGTACCTGGGGTGGCTGCGCTTCAGGCGGCAGCCTGGGTTCAGCCCAGA
GGCGCTGATCCGCCAACCTCTTCTCCCTCAAGCGGGATAGCGCTTGAACGCCGCCGAATGCCGCCATCCCCATTCATGTAGAATTGCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 97 | 1140 | + | No |
Chemistry : DDE
ORF sequence :
MDDAQFEVLKAAIANELTAAQCVELEGVVREVSSRRVGETTLLLRTEALDGDRVCPRCGNTRIVKNGLDHLGRQRFRCVKHDDDEEERCGRGFNVLTGTP
FARMRKPEKWLAYARLMMRSASITDIHESGIGISRLTAWRWRHRFLALPTTLQAERLDGIIEVDETYFRSSYKGSRAWKEGRPPENRPPRYRGGPAKRRG
LSREQIPVLTAVDRSGGVVEGVMMRRAASVARTMLLGRIAEGAVPCSDGWAAYPQIAEACGADHRLVEAPRDDWLVRALGTGPRRPGRMGLGRINAHHER
LKAFMNIVLRGVSTKYLPAYLGWLRFRRQPGFSPEALIRQPLLPQAG
FARMRKPEKWLAYARLMMRSASITDIHESGIGISRLTAWRWRHRFLALPTTLQAERLDGIIEVDETYFRSSYKGSRAWKEGRPPENRPPRYRGGPAKRRG
LSREQIPVLTAVDRSGGVVEGVMMRRAASVARTMLLGRIAEGAVPCSDGWAAYPQIAEACGADHRLVEAPRDDWLVRALGTGPRRPGRMGLGRINAHHER
LKAFMNIVLRGVSTKYLPAYLGWLRFRRQPGFSPEALIRQPLLPQAG
Blast result :
Comments
ISCasa1 is 68% aa similar to ISPla1.
References
1] ISfinder annotation (2016)
2] Khatri,I., Singh,A., Korpole,S., Pinnaka,A.K. and Subramanian,S. (2013) Genome Announc 1 (1), E00199-12 .
2] Khatri,I., Singh,A., Korpole,S., Pinnaka,A.K. and Subramanian,S. (2013) Genome Announc 1 (1), E00199-12 .