ISHja2

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOLY01000011 ND Haloarcula japonica
Haloarcula japonica DSM 6131
DNA section
IS Length : 1090 bp

Ends


IR Length : 21/25

IRL : CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGCCGCTGTGAAAGC
IRR : CGCTCTTGTGAAGTACATTGTTGGTGAGTCAGAGAGCTTCTCGAATAATC

Insertion site


Left flankDirect repeatRight flankDR Length
TTCATGATTAACGTTTGTTT0

DNA sequence

CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGCCGCTGTGAAAGCGTAGCGGGCAAGGGTGACGCGAACGCGTCACCCGAACGCAATGTTCCCAT
TTGAATTGCTGAGCTCGGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCTGTTGCCCGCGCTGCCGGTCTGAGTCGGTGAT
CAAACACGGCAGCTATCGGGAGTACCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATC
GGCCTCGACAAGCTCTTATTCGCGTTCTACTCGTTCCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAACTCGACGTTTCGTATCGCTCGCTCC
GCCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCATCAACCTCGTTGGCCCAGTCGAGATCGACGAGTTCTACGTCTCTGCCGGGAAGAA
AGGCCGCGAGCGCGACCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACNGAGTTCTACGTCTCTGCCGGGAAGAAAGGCCGCGAGCGC
GACCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACGTATGAAGAGGACAAACCGCCGGTGTTCACGCTCGTTGATCGCGGCACCAGTC
AGCGATACGTCATCCCGGCGAAATCCGCCGATGAAGCGACGGTGCGACTCCTTCTCGACAACCACGAGAAGGAGTCGCTGACCGTCTATACGGACGGATT
TCGGGCCTACGATCCGCTTGACGATGACGAGAGCTTCCACCGAGAATCAGTAATTCACGGTGACGGTGAGTACGTTGATGGAGACGCGCACGTGAACACG
TGCGAGAGCCACGCGTCGCTTGCGCGACGGTGGCTCTCGCCACATCGAGGCGTCTCAAAGGACAAACTGACAGCGTATCTCAGACCGTTCCAACTTCGGC
GACGAATCCTCCGCAAACCCGGGCGAGAAGCACTGAAACAGATTATTCGAGAAGCTCTCTGACTCACCAACAATGTACTTCACAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa911062+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFPFELLSSEASAANLLEQVRWREGLCCPRCRSESVIKHGSYREYQRYLCKDCDRTFNDKTGTIFAHAKIGLDKLLFAFYSFLRFNTSIRQLDAELDVSY
RSLRRRVEQFARTLDAPAINLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTEFYVSAGKKGRERDRESRSRALSKRGRGTYEEDKPPVFTLVDR
GTSQRYVIPAKSADEATVRLLLDNHEKESLTVYTDGFRAYDPLDDDESFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPF
QLRRRILRKPGREALKQIIREAL

 

Blast result :
Comments
ISHja2 is 90% aa similar to ISNph2.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.