ISHja2
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOLY01000011 | ND | Haloarcula japonica | Haloarcula japonica DSM 6131 |
DNA section
IS Length : 1090 bp
Ends
IR Length : 21/25
IRL : CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGCCGCTGTGAAAGC
IRR : CGCTCTTGTGAAGTACATTGTTGGTGAGTCAGAGAGCTTCTCGAATAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCATGATTA | ACGTTTGTTT | 0 |
DNA sequence
CGCTCTTCGGAAGCAGATTGTTGGTCGGGTAGAGCTGCCGCTGTGAAAGCGTAGCGGGCAAGGGTGACGCGAACGCGTCACCCGAACGCAATGTTCCCAT
TTGAATTGCTGAGCTCGGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCTGTTGCCCGCGCTGCCGGTCTGAGTCGGTGAT
CAAACACGGCAGCTATCGGGAGTACCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATC
GGCCTCGACAAGCTCTTATTCGCGTTCTACTCGTTCCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAACTCGACGTTTCGTATCGCTCGCTCC
GCCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCATCAACCTCGTTGGCCCAGTCGAGATCGACGAGTTCTACGTCTCTGCCGGGAAGAA
AGGCCGCGAGCGCGACCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACNGAGTTCTACGTCTCTGCCGGGAAGAAAGGCCGCGAGCGC
GACCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACGTATGAAGAGGACAAACCGCCGGTGTTCACGCTCGTTGATCGCGGCACCAGTC
AGCGATACGTCATCCCGGCGAAATCCGCCGATGAAGCGACGGTGCGACTCCTTCTCGACAACCACGAGAAGGAGTCGCTGACCGTCTATACGGACGGATT
TCGGGCCTACGATCCGCTTGACGATGACGAGAGCTTCCACCGAGAATCAGTAATTCACGGTGACGGTGAGTACGTTGATGGAGACGCGCACGTGAACACG
TGCGAGAGCCACGCGTCGCTTGCGCGACGGTGGCTCTCGCCACATCGAGGCGTCTCAAAGGACAAACTGACAGCGTATCTCAGACCGTTCCAACTTCGGC
GACGAATCCTCCGCAAACCCGGGCGAGAAGCACTGAAACAGATTATTCGAGAAGCTCTCTGACTCACCAACAATGTACTTCACAAGAGCG
TTGAATTGCTGAGCTCGGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGCGAGGGCCTCTGTTGCCCGCGCTGCCGGTCTGAGTCGGTGAT
CAAACACGGCAGCTATCGGGAGTACCAGCGGTATCTCTGTAAGGATTGCGACCGCACGTTCAACGACAAGACCGGCACGATCTTCGCGCACGCGAAGATC
GGCCTCGACAAGCTCTTATTCGCGTTCTACTCGTTCCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAACTCGACGTTTCGTATCGCTCGCTCC
GCCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAGCCATCAACCTCGTTGGCCCAGTCGAGATCGACGAGTTCTACGTCTCTGCCGGGAAGAA
AGGCCGCGAGCGCGACCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACNGAGTTCTACGTCTCTGCCGGGAAGAAAGGCCGCGAGCGC
GACCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACGTATGAAGAGGACAAACCGCCGGTGTTCACGCTCGTTGATCGCGGCACCAGTC
AGCGATACGTCATCCCGGCGAAATCCGCCGATGAAGCGACGGTGCGACTCCTTCTCGACAACCACGAGAAGGAGTCGCTGACCGTCTATACGGACGGATT
TCGGGCCTACGATCCGCTTGACGATGACGAGAGCTTCCACCGAGAATCAGTAATTCACGGTGACGGTGAGTACGTTGATGGAGACGCGCACGTGAACACG
TGCGAGAGCCACGCGTCGCTTGCGCGACGGTGGCTCTCGCCACATCGAGGCGTCTCAAAGGACAAACTGACAGCGTATCTCAGACCGTTCCAACTTCGGC
GACGAATCCTCCGCAAACCCGGGCGAGAAGCACTGAAACAGATTATTCGAGAAGCTCTCTGACTCACCAACAATGTACTTCACAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 91 | 1062 | + | No |
Chemistry : DDE
ORF sequence :
MFPFELLSSEASAANLLEQVRWREGLCCPRCRSESVIKHGSYREYQRYLCKDCDRTFNDKTGTIFAHAKIGLDKLLFAFYSFLRFNTSIRQLDAELDVSY
RSLRRRVEQFARTLDAPAINLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTEFYVSAGKKGRERDRESRSRALSKRGRGTYEEDKPPVFTLVDR
GTSQRYVIPAKSADEATVRLLLDNHEKESLTVYTDGFRAYDPLDDDESFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPF
QLRRRILRKPGREALKQIIREAL
RSLRRRVEQFARTLDAPAINLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTEFYVSAGKKGRERDRESRSRALSKRGRGTYEEDKPPVFTLVDR
GTSQRYVIPAKSADEATVRLLLDNHEKESLTVYTDGFRAYDPLDDDESFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPF
QLRRRILRKPGREALKQIIREAL
Blast result :
Comments
ISHja2 is 90% aa similar to ISNph2.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.