ISHpal1
- Family IS1595
- Group ISH4
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AOIV01000036 | ND | Halogeometricum pallidum | Halogeometricum pallidum JCM 14848 |
DNA section
IS Length : 1046 bp
Ends
IR Length : 28
IRL : CGCTCTTATGTAGAGCTGCGGAAAGCCCGTGTAGTTACACTAAGCCGGCG
IRR : CGCTCTTATGTAGAGCTGCGGAAAGCCCCGAGAACGAGGCAGTCGATGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCGTTGGTTA | AGACTGAT | GCAGGCTTCG | 8 |
DNA sequence
CGCTCTTATGTAGAGCTGCGGAAAGCCCGTGTAGTTACACTAAGCCGGCGATAATCTAGCAGTATGGCTTCTGCTCAGCCGGCGTTCGGCGGGATGTTTC
GCGAGCTGATCGAGCTGGGCGTCGTCGAGATCGACACTGAGCCGCTCGATGCACGCATCGAGCGGCGACTCAAGGACTTCTGGGAGCACACGTCCTGTCC
ACGCTGCGGGCACAACTCGGTTCAAACGTGGTCGACTCTCGACCGCATCTGGTGCCGTGATTGCAATTTCAAGCCGGTCTATACGTACGGAACGCCATTT
CACGAGAAACACCTCGCCACAGGTGAGGTGCTTCTCGCGTTCACGCTCTACGCGGATACGCTGCTCAGCATCAATCAGATCGCGCCGCTGCTCGGACGGG
CGTATAGAACGGTCTATTACGCGATTCGTGAGGTGGAAGCCGCGATGAATCGCGGCTTCCCCATCGTCTGGAAGCTTCTCGATCAGACGATCGACGGACC
GACACAGGTCGACGAGTCCGGGGAGGTGTGTTCAGGGTACAAAGGCCAAGATCCGCCGCGAGACAGTCGTCCTCGCGGCGGATCGTCTCGATCGGGGCGG
TCGCGGTGGCGAGGACGCTACGGCGACCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTGCGGGTGATTCGCGGCCAACCTGGAATCGATTACAGCG
GCGATCTTGAACCAGTGATTCTGGAAGCTGCAGACCTCTCTACGGAGTTAGGAGAGGTCTGGACTGACGGTCTCCAAGCGTATCGAGAGATGGAGTTCGA
GCATCGGACGGTCGTGCACAAGGAGCGGTACGTTTCGCCAGACGGCGTCCACATCAACCAGGCCGAGTGTCTGTTCTCGCTGGTGACACCGTGGCTACGG
AAGTTTCGCGGCCTGTCCAAGCAAGGCTTGGAACAGGCCGCTCACACCTTCGGCCTCATTCGCTCGTTGAACCTTGCCGGCGAATCCCTCGAAACCGCCA
TCGACTGCCTCGTTCTCGGGGCTTTCCGCAGCTCTACATAAGAGCG
GCGAGCTGATCGAGCTGGGCGTCGTCGAGATCGACACTGAGCCGCTCGATGCACGCATCGAGCGGCGACTCAAGGACTTCTGGGAGCACACGTCCTGTCC
ACGCTGCGGGCACAACTCGGTTCAAACGTGGTCGACTCTCGACCGCATCTGGTGCCGTGATTGCAATTTCAAGCCGGTCTATACGTACGGAACGCCATTT
CACGAGAAACACCTCGCCACAGGTGAGGTGCTTCTCGCGTTCACGCTCTACGCGGATACGCTGCTCAGCATCAATCAGATCGCGCCGCTGCTCGGACGGG
CGTATAGAACGGTCTATTACGCGATTCGTGAGGTGGAAGCCGCGATGAATCGCGGCTTCCCCATCGTCTGGAAGCTTCTCGATCAGACGATCGACGGACC
GACACAGGTCGACGAGTCCGGGGAGGTGTGTTCAGGGTACAAAGGCCAAGATCCGCCGCGAGACAGTCGTCCTCGCGGCGGATCGTCTCGATCGGGGCGG
TCGCGGTGGCGAGGACGCTACGGCGACCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTGCGGGTGATTCGCGGCCAACCTGGAATCGATTACAGCG
GCGATCTTGAACCAGTGATTCTGGAAGCTGCAGACCTCTCTACGGAGTTAGGAGAGGTCTGGACTGACGGTCTCCAAGCGTATCGAGAGATGGAGTTCGA
GCATCGGACGGTCGTGCACAAGGAGCGGTACGTTTCGCCAGACGGCGTCCACATCAACCAGGCCGAGTGTCTGTTCTCGCTGGTGACACCGTGGCTACGG
AAGTTTCGCGGCCTGTCCAAGCAAGGCTTGGAACAGGCCGCTCACACCTTCGGCCTCATTCGCTCGTTGAACCTTGCCGGCGAATCCCTCGAAACCGCCA
TCGACTGCCTCGTTCTCGGGGCTTTCCGCAGCTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 978 bp | 325 aa | 64 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MASAQPAFGGMFRELIELGVVEIDTEPLDARIERRLKDFWEHTSCPRCGHNSVQTWSTLDRIWCRDCNFKPVYTYGTPFHEKHLATGEVLLAFTLYADTL
LSINQIAPLLGRAYRTVYYAIREVEAAMNRGFPIVWKLLDQTIDGPTQVDESGEVCSGYKGQDPPRDSRPRGGSSRSGRSRWRGRYGDQLTLVAACRDSL
RVIRGQPGIDYSGDLEPVILEAADLSTELGEVWTDGLQAYREMEFEHRTVVHKERYVSPDGVHINQAECLFSLVTPWLRKFRGLSKQGLEQAAHTFGLIR
SLNLAGESLETAIDCLVLGAFRSST
LSINQIAPLLGRAYRTVYYAIREVEAAMNRGFPIVWKLLDQTIDGPTQVDESGEVCSGYKGQDPPRDSRPRGGSSRSGRSRWRGRYGDQLTLVAACRDSL
RVIRGQPGIDYSGDLEPVILEAADLSTELGEVWTDGLQAYREMEFEHRTVVHKERYVSPDGVHINQAECLFSLVTPWLRKFRGLSKQGLEQAAHTFGLIR
SLNLAGESLETAIDCLVLGAFRSST
Blast result :
Comments
ISHpal1 is 94% aa similar to ISHsi3.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.