ISHir1

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNIA01000038 ND Haloarchaeobius iranensis
Haloarchaeobius iranensis EB21
DNA section
IS Length : 1046 bp

Ends


IR Length : 24/29

IRL : CGCTCTTGTGTAGAGCTACGGAAAGACCCTGTAGTTACACTGAACCAGCC
IRR : CGCTCTTATGTAGAATTGCGGAAAGCCCCGATAACGAGACAATCAACGAT

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTTGGTTAATGACTGATTGCCGCTCG8

DNA sequence

CGCTCTTGTGTAGAGCTACGGAAAGACCCTGTAGTTACACTGAACCAGCCATAATCTCGGAGTATGTCTTCTGCTCAGCCGGCGTTCGGAGCGATGTTTC
GAGAGCTGATCGAGCTGGGCGTCGTTGAGATCGACACGGAGCCGCTCGATGCCCGCATCGAGCGGCGACTCAAGGAATTCTGGGAGAATACATCCTGTCC
ACGGTGCGGTCACAACGCCGTTCAAACGTGGCCGCATCTCGACCGTGTGTGGTGCCGTGACTGCAACTTCAAGCCGGTCTACACCTACGGAACTCCACTT
CACGAGAAGCACCTCTCCTGCGGTGAGGTGCTTCTCGCGTTCACGCTCTATGCCGACACGTTGCTCAGTATCAACCAGATCGCACCGTTGCTCGGTCGGG
CCTACAAAACCGTTCACACGGCGATTCGGGAGGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTCTGGAAACTACTCGACCAGACCATCGATGGACC
GACGCAAGTCGACGAATCTGGCACGGTCTGTTCGGGCTACAAAGGACAAGAGCCGCCGCGGAACAGCCGTTCGCGCGGCGGCTCGTCCCAGACAGGCCGA
TCACGGTGGCGGGGACGCCAGGGTGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTACGCGTGATCCGTGGCCAACTTGGCATCGACTTCAGTG
GTGATCTTGAACCAGTGATTCAGGAGGCTGAAGACCTCTCCCAGCGTCTGGGAGAGGTCTGGACCGATGGTCTCCAAGCCTACCGAGAGATGGATTTTGA
GCACCGAACGGTCGTGCACAAGAAAAGGTACGTATCGCCCGACGGCGTCCATATTAACCAGGCTGAGTGCCTGTTCTCGCTCGTCCAGCCGTGGTTGCGG
AAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTTCGTTCACTCAACCTAGCGGGTGAATCCGCCGAGTCAATCG
TTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTACATAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa941041+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFRELIELGVVEIDTEPLDARIERRLKEFWENTSCPRCGHNAVQTWPHLDRVWCRDCNFKPVYTYGTPLHEKHLSCGEVLLAFTLYADTLLSINQIAPLL
GRAYKTVHTAIREVEAAVQRGFPVVWKLLDQTIDGPTQVDESGTVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRQGDQLTLVAACRDSLRVIRGQLGID
FSGDLEPVIQEAEDLSQRLGEVWTDGLQAYREMDFEHRTVVHKKRYVSPDGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVRSLNLAGESAE
SIVDCLVIGAFRNST

 

Blast result :
Comments
ISHir1 is 87% aa similar to ISHvo6.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.