ISHir1
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FNIA01000038 | ND | Haloarchaeobius iranensis | Haloarchaeobius iranensis EB21 |
DNA section
IS Length : 1046 bp
Ends
IR Length : 24/29
IRL : CGCTCTTGTGTAGAGCTACGGAAAGACCCTGTAGTTACACTGAACCAGCC
IRR : CGCTCTTATGTAGAATTGCGGAAAGCCCCGATAACGAGACAATCAACGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTTGGTTA | ATGACTGA | TTGCCGCTCG | 8 |
DNA sequence
CGCTCTTGTGTAGAGCTACGGAAAGACCCTGTAGTTACACTGAACCAGCCATAATCTCGGAGTATGTCTTCTGCTCAGCCGGCGTTCGGAGCGATGTTTC
GAGAGCTGATCGAGCTGGGCGTCGTTGAGATCGACACGGAGCCGCTCGATGCCCGCATCGAGCGGCGACTCAAGGAATTCTGGGAGAATACATCCTGTCC
ACGGTGCGGTCACAACGCCGTTCAAACGTGGCCGCATCTCGACCGTGTGTGGTGCCGTGACTGCAACTTCAAGCCGGTCTACACCTACGGAACTCCACTT
CACGAGAAGCACCTCTCCTGCGGTGAGGTGCTTCTCGCGTTCACGCTCTATGCCGACACGTTGCTCAGTATCAACCAGATCGCACCGTTGCTCGGTCGGG
CCTACAAAACCGTTCACACGGCGATTCGGGAGGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTCTGGAAACTACTCGACCAGACCATCGATGGACC
GACGCAAGTCGACGAATCTGGCACGGTCTGTTCGGGCTACAAAGGACAAGAGCCGCCGCGGAACAGCCGTTCGCGCGGCGGCTCGTCCCAGACAGGCCGA
TCACGGTGGCGGGGACGCCAGGGTGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTACGCGTGATCCGTGGCCAACTTGGCATCGACTTCAGTG
GTGATCTTGAACCAGTGATTCAGGAGGCTGAAGACCTCTCCCAGCGTCTGGGAGAGGTCTGGACCGATGGTCTCCAAGCCTACCGAGAGATGGATTTTGA
GCACCGAACGGTCGTGCACAAGAAAAGGTACGTATCGCCCGACGGCGTCCATATTAACCAGGCTGAGTGCCTGTTCTCGCTCGTCCAGCCGTGGTTGCGG
AAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTTCGTTCACTCAACCTAGCGGGTGAATCCGCCGAGTCAATCG
TTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTACATAAGAGCG
GAGAGCTGATCGAGCTGGGCGTCGTTGAGATCGACACGGAGCCGCTCGATGCCCGCATCGAGCGGCGACTCAAGGAATTCTGGGAGAATACATCCTGTCC
ACGGTGCGGTCACAACGCCGTTCAAACGTGGCCGCATCTCGACCGTGTGTGGTGCCGTGACTGCAACTTCAAGCCGGTCTACACCTACGGAACTCCACTT
CACGAGAAGCACCTCTCCTGCGGTGAGGTGCTTCTCGCGTTCACGCTCTATGCCGACACGTTGCTCAGTATCAACCAGATCGCACCGTTGCTCGGTCGGG
CCTACAAAACCGTTCACACGGCGATTCGGGAGGTGGAAGCCGCGGTTCAGCGCGGCTTCCCCGTCGTCTGGAAACTACTCGACCAGACCATCGATGGACC
GACGCAAGTCGACGAATCTGGCACGGTCTGTTCGGGCTACAAAGGACAAGAGCCGCCGCGGAACAGCCGTTCGCGCGGCGGCTCGTCCCAGACAGGCCGA
TCACGGTGGCGGGGACGCCAGGGTGATCAGCTGACGCTCGTCGCGGCGTGCCGCGACTCGCTACGCGTGATCCGTGGCCAACTTGGCATCGACTTCAGTG
GTGATCTTGAACCAGTGATTCAGGAGGCTGAAGACCTCTCCCAGCGTCTGGGAGAGGTCTGGACCGATGGTCTCCAAGCCTACCGAGAGATGGATTTTGA
GCACCGAACGGTCGTGCACAAGAAAAGGTACGTATCGCCCGACGGCGTCCATATTAACCAGGCTGAGTGCCTGTTCTCGCTCGTCCAGCCGTGGTTGCGG
AAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTTCGTTCACTCAACCTAGCGGGTGAATCCGCCGAGTCAATCG
TTGATTGTCTCGTTATCGGGGCTTTCCGCAATTCTACATAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 94 | 1041 | + | No |
Chemistry : DDE
ORF sequence :
MFRELIELGVVEIDTEPLDARIERRLKEFWENTSCPRCGHNAVQTWPHLDRVWCRDCNFKPVYTYGTPLHEKHLSCGEVLLAFTLYADTLLSINQIAPLL
GRAYKTVHTAIREVEAAVQRGFPVVWKLLDQTIDGPTQVDESGTVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRQGDQLTLVAACRDSLRVIRGQLGID
FSGDLEPVIQEAEDLSQRLGEVWTDGLQAYREMDFEHRTVVHKKRYVSPDGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVRSLNLAGESAE
SIVDCLVIGAFRNST
GRAYKTVHTAIREVEAAVQRGFPVVWKLLDQTIDGPTQVDESGTVCSGYKGQEPPRNSRSRGGSSQTGRSRWRGRQGDQLTLVAACRDSLRVIRGQLGID
FSGDLEPVIQEAEDLSQRLGEVWTDGLQAYREMDFEHRTVVHKKRYVSPDGVHINQAECLFSLVQPWLRKFRGLSKQGLEQAAHTFGIVRSLNLAGESAE
SIVDCLVIGAFRNST
Blast result :
Comments
ISHir1 is 87% aa similar to ISHvo6.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.