ISHsa2

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AOME01000102 ND Halococcus salifodinae
Halococcus salifodinae DSM 8989
DNA section
IS Length : 1037 bp

Ends


IR Length : 21/23

IRL : CGCTCTTGTGTAGCGTAGCGGAACCGAGTCACGGAGATTACGGCATCCTG
IRR : CGCTCTTGTGTAGATTAGCGGAATACGTTGACGGCGACGCAATCGACAAG

Insertion site


Left flankDirect repeatRight flankDR Length
ATAGCAAACAGAACATTCGAATTAA0

DNA sequence

CGCTCTTGTGTAGCGTAGCGGAACCGAGTCACGGAGATTACGGCATCCTGCCGACAGCAGTCGTACATGACCAATGAACGCGCTGCTCTCGGCGGAATGC
TTGAGCAACTCGTTGACCTTGGAGCAATAGAGTTTCGGCCGGAGCCGCTCGACGCCATCGTCGAGCGGCGACTCAAAGCCATCTGGACCACCCGTACCTG
CCCGAACTGTGACGCCGANCTCGATGGTTCGGCCCGTATCTGGTGTGGCCGCTGTGACTGGAAAACCACCTACACCCGCGGCACACCCTTCTATGACTCG
GAACTCGCTCCCGGCGAGTTCCTCGTCGCCTTCGTCCTTTACGTTGATTCCCTCCTCAGCATCAACCAAATCGCACCGCTGCTTGACCGCGCCTACAAAA
CCGTCTTCGAGGCAATTAGCGACGTGGAAACCGCGTTCGCTCGCGGTTTCCCGACTGTTTGGGAACGCATCGAGCACACGATTGCTGGGCCGACACAGGT
GGACGAAACTCAGCGGGTGTGCTCGGGGTTCAAAGGCCAGAACCCACCGCGGGACGGACTGTCCCGCGGCGGGTCCCCTGGACCCGGACGGGCGCGATGG
ACAGGAGAGCAGGGCGATGAGATGACGCTCGTCGCGGCCTGCCGCGACGTTCTCCAGGTGATCTCAGCCGAAGAGGGGTCGAAATACGACGAGAACCTCG
GGCCAGTGATTGAGGAAGCAGGCGATCTCTCCCAGCCGCTGGGAGAGATCTGGACCGACGAGCTTCCCGCGTATCAGCAAATGGAACACGAGCATCGAAC
CGTTGTCCATGATGATGAGTACGTCTCAGAGGAAGGTATCCACACGAATCAGGTCGAATGCCTCTGGTCGTTAGTGCAACCGTGGCTGGCGAAATTCCGC
GGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCGCACCTTCGGGCTTCTTCGCTCCCTGAATCTTGTTCAAGCACCCATCCACAGCCTTGTCGATTGCG
TCGCCGTCAACGTATTCCGCTAATCTACACAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa971023+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLEQLVDLGAIEFRPEPLDAIVERRLKAIWTTRTCPNCDALDGSARIWCGRCDWKTTYTRGTPFYDSELAPGEFLVAFVLYVDSLLSINQIAPLLDRAYK
TVFEAISDVETAFARGFPTVWERIEHTIAGPTQVDETQRVCSGFKGQNPPRDGLSRGGSPGPGRARWTGEQGDEMTLVAACRDVLQVISAEEGSKYDENL
GPVIEEAGDLSQPLGEIWTDELPAYQQMEHEHRTVVHDDEYVSEEGIHTNQVECLWSLVQPWLAKFRGLSKQGLEQAARTFGLLRSLNLVQAPIHSLVDC
VAVNVFR

 

Blast result :
Comments
ISHsa2 is 87% aa similar to ISHsi1.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.