ISHsa2
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AOME01000102 | ND | Halococcus salifodinae | Halococcus salifodinae DSM 8989 |
DNA section
IS Length : 1037 bp
Ends
IR Length : 21/23
IRL : CGCTCTTGTGTAGCGTAGCGGAACCGAGTCACGGAGATTACGGCATCCTG
IRR : CGCTCTTGTGTAGATTAGCGGAATACGTTGACGGCGACGCAATCGACAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAGCAAACAGAAC | ATTCGAATTAA | 0 |
DNA sequence
CGCTCTTGTGTAGCGTAGCGGAACCGAGTCACGGAGATTACGGCATCCTGCCGACAGCAGTCGTACATGACCAATGAACGCGCTGCTCTCGGCGGAATGC
TTGAGCAACTCGTTGACCTTGGAGCAATAGAGTTTCGGCCGGAGCCGCTCGACGCCATCGTCGAGCGGCGACTCAAAGCCATCTGGACCACCCGTACCTG
CCCGAACTGTGACGCCGANCTCGATGGTTCGGCCCGTATCTGGTGTGGCCGCTGTGACTGGAAAACCACCTACACCCGCGGCACACCCTTCTATGACTCG
GAACTCGCTCCCGGCGAGTTCCTCGTCGCCTTCGTCCTTTACGTTGATTCCCTCCTCAGCATCAACCAAATCGCACCGCTGCTTGACCGCGCCTACAAAA
CCGTCTTCGAGGCAATTAGCGACGTGGAAACCGCGTTCGCTCGCGGTTTCCCGACTGTTTGGGAACGCATCGAGCACACGATTGCTGGGCCGACACAGGT
GGACGAAACTCAGCGGGTGTGCTCGGGGTTCAAAGGCCAGAACCCACCGCGGGACGGACTGTCCCGCGGCGGGTCCCCTGGACCCGGACGGGCGCGATGG
ACAGGAGAGCAGGGCGATGAGATGACGCTCGTCGCGGCCTGCCGCGACGTTCTCCAGGTGATCTCAGCCGAAGAGGGGTCGAAATACGACGAGAACCTCG
GGCCAGTGATTGAGGAAGCAGGCGATCTCTCCCAGCCGCTGGGAGAGATCTGGACCGACGAGCTTCCCGCGTATCAGCAAATGGAACACGAGCATCGAAC
CGTTGTCCATGATGATGAGTACGTCTCAGAGGAAGGTATCCACACGAATCAGGTCGAATGCCTCTGGTCGTTAGTGCAACCGTGGCTGGCGAAATTCCGC
GGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCGCACCTTCGGGCTTCTTCGCTCCCTGAATCTTGTTCAAGCACCCATCCACAGCCTTGTCGATTGCG
TCGCCGTCAACGTATTCCGCTAATCTACACAAGAGCG
TTGAGCAACTCGTTGACCTTGGAGCAATAGAGTTTCGGCCGGAGCCGCTCGACGCCATCGTCGAGCGGCGACTCAAAGCCATCTGGACCACCCGTACCTG
CCCGAACTGTGACGCCGANCTCGATGGTTCGGCCCGTATCTGGTGTGGCCGCTGTGACTGGAAAACCACCTACACCCGCGGCACACCCTTCTATGACTCG
GAACTCGCTCCCGGCGAGTTCCTCGTCGCCTTCGTCCTTTACGTTGATTCCCTCCTCAGCATCAACCAAATCGCACCGCTGCTTGACCGCGCCTACAAAA
CCGTCTTCGAGGCAATTAGCGACGTGGAAACCGCGTTCGCTCGCGGTTTCCCGACTGTTTGGGAACGCATCGAGCACACGATTGCTGGGCCGACACAGGT
GGACGAAACTCAGCGGGTGTGCTCGGGGTTCAAAGGCCAGAACCCACCGCGGGACGGACTGTCCCGCGGCGGGTCCCCTGGACCCGGACGGGCGCGATGG
ACAGGAGAGCAGGGCGATGAGATGACGCTCGTCGCGGCCTGCCGCGACGTTCTCCAGGTGATCTCAGCCGAAGAGGGGTCGAAATACGACGAGAACCTCG
GGCCAGTGATTGAGGAAGCAGGCGATCTCTCCCAGCCGCTGGGAGAGATCTGGACCGACGAGCTTCCCGCGTATCAGCAAATGGAACACGAGCATCGAAC
CGTTGTCCATGATGATGAGTACGTCTCAGAGGAAGGTATCCACACGAATCAGGTCGAATGCCTCTGGTCGTTAGTGCAACCGTGGCTGGCGAAATTCCGC
GGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCGCACCTTCGGGCTTCTTCGCTCCCTGAATCTTGTTCAAGCACCCATCCACAGCCTTGTCGATTGCG
TCGCCGTCAACGTATTCCGCTAATCTACACAAGAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
927 bp | 308 aa | 97 | 1023 | + | No |
Chemistry : DDE
ORF sequence :
MLEQLVDLGAIEFRPEPLDAIVERRLKAIWTTRTCPNCDALDGSARIWCGRCDWKTTYTRGTPFYDSELAPGEFLVAFVLYVDSLLSINQIAPLLDRAYK
TVFEAISDVETAFARGFPTVWERIEHTIAGPTQVDETQRVCSGFKGQNPPRDGLSRGGSPGPGRARWTGEQGDEMTLVAACRDVLQVISAEEGSKYDENL
GPVIEEAGDLSQPLGEIWTDELPAYQQMEHEHRTVVHDDEYVSEEGIHTNQVECLWSLVQPWLAKFRGLSKQGLEQAARTFGLLRSLNLVQAPIHSLVDC
VAVNVFR
TVFEAISDVETAFARGFPTVWERIEHTIAGPTQVDETQRVCSGFKGQNPPRDGLSRGGSPGPGRARWTGEQGDEMTLVAACRDVLQVISAEEGSKYDENL
GPVIEEAGDLSQPLGEIWTDELPAYQQMEHEHRTVVHDDEYVSEEGIHTNQVECLWSLVQPWLAKFRGLSKQGLEQAARTFGLLRSLNLVQAPIHSLVDC
VAVNVFR
Blast result :
Comments
ISHsa2 is 87% aa similar to ISHsi1.
References
1] ISfinder annotation (2016)
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.
2] Becker,E.A., Seitzer,P.M., Tritt,A., Larsen,D., Krusor,M., Yao,A.I., Wu,D., Madern,D., Eisen,J.A., Darling,A.E. and Facciotti,M.T. (2014) PLoS Genet. 10 (11), E1004784.