ISHara1

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FNFC01000034 ND Halovenus aranensis
Halovenus aranensis IBRC-M10015
DNA section
IS Length : 10556 bp

Ends


IR Length : 19/23

IRL : CGCTTTTCTGTAGCGTAGCGGAACTGGGCCACAGTTCGTAAGATTATGCC
IRR : CGCTCTTGTGTAGTCTAGCGGAAGACGTTGACAGCGATGCAGTCAACGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CTTACTTCAACGTACAAAGTGTACAAGTGGTATG0

DNA sequence

CGCTTTTCTGTAGCGTAGCGGAACTGGGCCACAGTTCGTAAGATTATGCCATCTCGCCGAAGGAGGAACGGTTGTGACCAACAATCGCGCCGCCCTCGGC
GAGATGCTTACGGATCTTGTGGAACTGGGAGCAATAGAGTTTCGGCCCGAGCCGATCGACGCCATCGTCGAGCGGCGACTCAAGGCCATATGGGCGGCGC
GATCGTGCCCGAACTGCGGTGAGAAGAGCCTCCACGCACTCGACGACTCCAAGCGGATCTGGTGTGGCCGATGTGACTGGAAAACGACGTACACTCGCGG
GACACCGTTCTACGATTCGGAACTCGCTCCTGGCGAGTTCCTCATCGCGTTCATCCTCTACGCTGATACCCACCTCAGCATCAACCAGATCGCGTTCCTC
CTCTCACCGACCTACAAGACTCTCCACGGCTGTATCAAAGAGACCGAATCGGCGTTCGTTCGTGGCTTTCCGACCGTCTGGGACCGTATCTCCCAGACGG
TCGGTGGTCCAACACAAGTCGATGAAACCCAGCAGGAGTGTTCTGGGTACAAGGGACAAGATCCACCGCGAGAGGGGCTTGACCGTGGCGGCTCACCAGA
CGGAGGGAGAACACGATGGAGTGGAGAGCAGGGAGATGAACTGACGCTCGTCGCGGGATGCCGCGACGAGCTCCGAGTGGTATCAGCTGAGGAGGAAACG
CGGTACGACGAGGAGTTAGGACCAGTGATCGAGGAGGTAGATGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACCGATGAACTCCCAGCTTATCAAGCGA
TGGACCACGATCATCAGACTGTCTGCCACGATGATGAATACGTCACTGATGACGGCGTTACCACGAACCAGGTAGAGTGTCTCTGGTCTTTGATCCAGCC
GTGGTTGGCGAAATTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCGTTCCTACGGCTTTCTCCGCTCACTGAATCTCAGCCACGCACCCGTA
CATGGAATCGTTGACTGCATCGCTGTCAACGTCTTCCGCTAGACTACACAAGAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa741042+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTNNRAALGEMLTDLVELGAIEFRPEPIDAIVERRLKAIWAARSCPNCGEKSLHALDDSKRIWCGRCDWKTTYTRGTPFYDSELAPGEFLIAFILYADTH
LSINQIAFLLSPTYKTLHGCIKETESAFVRGFPTVWDRISQTVGGPTQVDETQQECSGYKGQDPPREGLDRGGSPDGGRTRWSGEQGDELTLVAGCRDEL
RVVSAEEETRYDEELGPVIEEVDDLSQPLGEVWTDELPAYQAMDHDHQTVCHDDEYVTDDGVTTNQVECLWSLIQPWLAKFRGLSKQGLEQAARSYGFLR
SLNLSHAPVHGIVDCIAVNVFR

 

Blast result :
Comments
ISHara1 is 87% aa similar to ISHsi1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct GenBank submission.