ISGba1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MGZE01000007 ND Gemmatimonadetes bacterium
Gemmatimonadetes bacterium RBG_16_66_8
DNA section
IS Length : 1061 bp

Ends


IR Length : 36/44

IRL : AGGGGGGTGGACGGTTAGCTCCTCCTGGCCCAAGATGTTGTGGTGGGCGT
IRR : AGGGGGGTAGACGGTTAGCTCCTCCACTCCCAGCCGGTTGTGGTTCACCA

Insertion site


Left flankDirect repeatRight flankDR Length
GAGAAATTGGAAAACTGGGTATTTCCTCA0

DNA sequence

AGGGGGGTGGACGGTTAGCTCCTCCTGGCCCAAGATGTTGTGGTGGGCGTTTCGTCCGAAGAGCCGACCTTACCTCTTGCGCTGGTCGCGGGCCGCGACT
ACCCGCGTAGCTACCGCGAGTTCGTGGAGATGTTTCCGGACGCGGCGGCGTGCGCCGCCTACCTGGAGCGGTTGCGCTGGCCGGGTGGGTTCACCTGCCC
GGCGTGCAAGGGCACCGCCGGGGCATGGCGCCAGACGCGAGGTCGCCTGGCGTGCTCTGTGTGCCGCCATCACACCTCTGTCACGGCTGGAACGATTCTC
GACAAGACGCGCACACCCCTGACGACCTGGTTTGAAGCGGCGTGGCATGTGACGACTGCCAAGAACGGCCTATCGGCCAAGACGCTCGAGCGCACGCTGG
GCACAAGGTACCGAGTCGCGTGGGCGATGCTGCAACGGTTCCGAGTGGCGATGGTTCGCGCGGAGCGGAACCCGCTGTCAGGCAACGTGGAAGTCGACGA
GACCTTGGTCGGGGGCGTCGAACACGGCGGCAAGCGCGGACGGGGCGCCTCGAAGTCGGTTGTGGTCATCGCCGTCGAGGTTCTTCAACCCAAGGGCTTC
GGGCGAGTCCGGATGCGCCACGTCCCTGACGCGTCAGGCGCCAACCTCCTGCCGTTCGTGTGCGACGTGGTTGCCCCCGGCGCCACGGTATGCACCGACG
GCTGGGGCGGCTACAACGACCTGCCCAAGCACGGATACACGCGCCAGAAGACGGTGCTGTCGTCATCAGGCGATCCCGCCCACGTGGCCATGCCCGCCGT
GCACCGGGTCGCCAGCCTGCTCAAGCGGTGGATTCTCGGTACGCACCAGGGCGCCGTCACTCCAGACCACCTGCAGTCCTACCTGGAGGAGTTCACCTTC
CGCTTCAACCGCCGAACCTCCGGCAGTCGTGGCCTCGTATTCCGCCGCCTTCTCGAACAAGCGGTCGTCACCGGTCCTGTTACCGAGGACGACGTGACCG
ACGGCTACGACTGGTGAACCACAACCGGCTGGGAGTGGAGGAGCTAACCGTCTACCCCCCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
975 bp324 aa431017+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGVSSEEPTLPLALVAGRDYPRSYREFVEMFPDAAACAAYLERLRWPGGFTCPACKGTAGAWRQTRGRLACSVCRHHTSVTAGTILDKTRTPLTTWFEAA
WHVTTAKNGLSAKTLERTLGTRYRVAWAMLQRFRVAMVRAERNPLSGNVEVDETLVGGVEHGGKRGRGASKSVVVIAVEVLQPKGFGRVRMRHVPDASGA
NLLPFVCDVVAPGATVCTDGWGGYNDLPKHGYTRQKTVLSSSGDPAHVAMPAVHRVASLLKRWILGTHQGAVTPDHLQSYLEEFTFRFNRRTSGSRGLVF
RRLLEQAVVTGPVTEDDVTDGYDW

 

Blast result :
Comments
ISGba1 is 68% aa similar to ISPosp3.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016)Nat Commun 7, 13219.