ISGba1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
MGZE01000007 | ND | Gemmatimonadetes bacterium | Gemmatimonadetes bacterium RBG_16_66_8 |
DNA section
IS Length : 1061 bp
Ends
IR Length : 36/44
IRL : AGGGGGGTGGACGGTTAGCTCCTCCTGGCCCAAGATGTTGTGGTGGGCGT
IRR : AGGGGGGTAGACGGTTAGCTCCTCCACTCCCAGCCGGTTGTGGTTCACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGAAATTGGAAAA | CTGGGTATTTCCTCA | 0 |
DNA sequence
AGGGGGGTGGACGGTTAGCTCCTCCTGGCCCAAGATGTTGTGGTGGGCGTTTCGTCCGAAGAGCCGACCTTACCTCTTGCGCTGGTCGCGGGCCGCGACT
ACCCGCGTAGCTACCGCGAGTTCGTGGAGATGTTTCCGGACGCGGCGGCGTGCGCCGCCTACCTGGAGCGGTTGCGCTGGCCGGGTGGGTTCACCTGCCC
GGCGTGCAAGGGCACCGCCGGGGCATGGCGCCAGACGCGAGGTCGCCTGGCGTGCTCTGTGTGCCGCCATCACACCTCTGTCACGGCTGGAACGATTCTC
GACAAGACGCGCACACCCCTGACGACCTGGTTTGAAGCGGCGTGGCATGTGACGACTGCCAAGAACGGCCTATCGGCCAAGACGCTCGAGCGCACGCTGG
GCACAAGGTACCGAGTCGCGTGGGCGATGCTGCAACGGTTCCGAGTGGCGATGGTTCGCGCGGAGCGGAACCCGCTGTCAGGCAACGTGGAAGTCGACGA
GACCTTGGTCGGGGGCGTCGAACACGGCGGCAAGCGCGGACGGGGCGCCTCGAAGTCGGTTGTGGTCATCGCCGTCGAGGTTCTTCAACCCAAGGGCTTC
GGGCGAGTCCGGATGCGCCACGTCCCTGACGCGTCAGGCGCCAACCTCCTGCCGTTCGTGTGCGACGTGGTTGCCCCCGGCGCCACGGTATGCACCGACG
GCTGGGGCGGCTACAACGACCTGCCCAAGCACGGATACACGCGCCAGAAGACGGTGCTGTCGTCATCAGGCGATCCCGCCCACGTGGCCATGCCCGCCGT
GCACCGGGTCGCCAGCCTGCTCAAGCGGTGGATTCTCGGTACGCACCAGGGCGCCGTCACTCCAGACCACCTGCAGTCCTACCTGGAGGAGTTCACCTTC
CGCTTCAACCGCCGAACCTCCGGCAGTCGTGGCCTCGTATTCCGCCGCCTTCTCGAACAAGCGGTCGTCACCGGTCCTGTTACCGAGGACGACGTGACCG
ACGGCTACGACTGGTGAACCACAACCGGCTGGGAGTGGAGGAGCTAACCGTCTACCCCCCT
ACCCGCGTAGCTACCGCGAGTTCGTGGAGATGTTTCCGGACGCGGCGGCGTGCGCCGCCTACCTGGAGCGGTTGCGCTGGCCGGGTGGGTTCACCTGCCC
GGCGTGCAAGGGCACCGCCGGGGCATGGCGCCAGACGCGAGGTCGCCTGGCGTGCTCTGTGTGCCGCCATCACACCTCTGTCACGGCTGGAACGATTCTC
GACAAGACGCGCACACCCCTGACGACCTGGTTTGAAGCGGCGTGGCATGTGACGACTGCCAAGAACGGCCTATCGGCCAAGACGCTCGAGCGCACGCTGG
GCACAAGGTACCGAGTCGCGTGGGCGATGCTGCAACGGTTCCGAGTGGCGATGGTTCGCGCGGAGCGGAACCCGCTGTCAGGCAACGTGGAAGTCGACGA
GACCTTGGTCGGGGGCGTCGAACACGGCGGCAAGCGCGGACGGGGCGCCTCGAAGTCGGTTGTGGTCATCGCCGTCGAGGTTCTTCAACCCAAGGGCTTC
GGGCGAGTCCGGATGCGCCACGTCCCTGACGCGTCAGGCGCCAACCTCCTGCCGTTCGTGTGCGACGTGGTTGCCCCCGGCGCCACGGTATGCACCGACG
GCTGGGGCGGCTACAACGACCTGCCCAAGCACGGATACACGCGCCAGAAGACGGTGCTGTCGTCATCAGGCGATCCCGCCCACGTGGCCATGCCCGCCGT
GCACCGGGTCGCCAGCCTGCTCAAGCGGTGGATTCTCGGTACGCACCAGGGCGCCGTCACTCCAGACCACCTGCAGTCCTACCTGGAGGAGTTCACCTTC
CGCTTCAACCGCCGAACCTCCGGCAGTCGTGGCCTCGTATTCCGCCGCCTTCTCGAACAAGCGGTCGTCACCGGTCCTGTTACCGAGGACGACGTGACCG
ACGGCTACGACTGGTGAACCACAACCGGCTGGGAGTGGAGGAGCTAACCGTCTACCCCCCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
975 bp | 324 aa | 43 | 1017 | + | No |
Chemistry : DDE
ORF sequence :
MGVSSEEPTLPLALVAGRDYPRSYREFVEMFPDAAACAAYLERLRWPGGFTCPACKGTAGAWRQTRGRLACSVCRHHTSVTAGTILDKTRTPLTTWFEAA
WHVTTAKNGLSAKTLERTLGTRYRVAWAMLQRFRVAMVRAERNPLSGNVEVDETLVGGVEHGGKRGRGASKSVVVIAVEVLQPKGFGRVRMRHVPDASGA
NLLPFVCDVVAPGATVCTDGWGGYNDLPKHGYTRQKTVLSSSGDPAHVAMPAVHRVASLLKRWILGTHQGAVTPDHLQSYLEEFTFRFNRRTSGSRGLVF
RRLLEQAVVTGPVTEDDVTDGYDW
WHVTTAKNGLSAKTLERTLGTRYRVAWAMLQRFRVAMVRAERNPLSGNVEVDETLVGGVEHGGKRGRGASKSVVVIAVEVLQPKGFGRVRMRHVPDASGA
NLLPFVCDVVAPGATVCTDGWGGYNDLPKHGYTRQKTVLSSSGDPAHVAMPAVHRVASLLKRWILGTHQGAVTPDHLQSYLEEFTFRFNRRTSGSRGLVF
RRLLEQAVVTGPVTEDDVTDGYDW
Blast result :
Comments
ISGba1 is 68% aa similar to ISPosp3.
References
1] ISfinder annotation (2016)
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016)Nat Commun 7, 13219.
2] Anantharaman,K., Brown,C.T., Hug,L.A., Sharon,I., Castelle,C.J., Probst,A.J., Thomas,B.C., Singh,A., Wilkins,M.J., Karaoz,U., Brodie,E.L., Williams,K.H., Hubbard,S.S. and Banfield,J.F. (2016)Nat Commun 7, 13219.