ISLisp1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ALKN01000051 | ND | Limnohabitans sp. | Limnohabitans sp. Limnohabitans sp. Rim28 |
DNA section
IS Length : 2513 bp
Ends
IR Length : 24/29
IRL : TGTTGaatcacaaccaaaactgagccagtttcggagctttacacgTTGAA
IRR : TGTTGattcatcagccaaactgagccagtgttcacgttgaatattgagcc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
aggtccggaa | gccccagggc | 0 |
DNA sequence
TGTTGaatcacaaccaaaactgagccagtttcggagctttacacgTTGAAatttgagccaccccacaagctaccctgcttattttttgtgcagggtggca
ggaGTGATCAACGTGAGTACATTGAGCAAATTACGTCGTCTTGTTTTAAGAGACAACGTGTCCATTCGCGAGGCTAGCCGCCAGCTTGGAATTTCCCGCA
ATACGGCCAAGAAGTGGCTGGAGCAATCCGAGATGGTGGAGCCCCGCTATCCCAAACGGGCGTCAGGACCAGGCATATTGGGTCCCTACGAGGAGGTGCT
TACGCAGTGGCTCAAGTCCGACAGCCACCGCAACAAACGTGAGCGCCGAGGCACCAAGGCGCTGTTTGAGGGGCTGAGGGCGCTGGGTTACCCGGGCAGC
CGGGGCCCGGTTTACACCTTTGCCCTGCGTTGGCGCAAAGAGCAGGACTTGGCGGCCAAGGGCCAAGGTTATGTGCCCATGCACTTTGACATGGGCGAAG
CCTTCCAGTTTGACTGGAGCACTGAATACGCGGTCATTGGCGGTTTGCGCAGGCGTTTGGACTTGGCGCACACCAAGCTGGCGGCCAGCCGGGCGTTTGT
GCTGTCGGCCTATTACAACCAGGCGCACGAGATGCTGTTCGAGGCGCACGCCCGGGCCTTTGCCGTGTTTGGCGGGGTGACCAAGCGCGGGATCTACGAC
AACATGAAGACGGCGGTGGACAAGGTGGGGGACGGCAAGAAGCGCACCATCAACGCCCGCTTTGAGACGATGACGGGGCACTACCTGTTTGATCCCGAGT
TCTGCAACCGTGCAGCCGGCTGGGAGAAAGGCATTGTTGAGAAGAACGTTCAAGACCGACGCCGCGGCATCTGGCGCGAAGCCAGCGAGCGGCGCTGGAA
TTCACTTGAAGAGCTCAATGCCTGGCTGCAAAAGGCCTGTGTCGAGGCCTGGGAGCATCTACAGCATCCTGAGTGGGTGCACATGACGGTGGCCGATGTG
TACCAGGACGAGCGGCTGCGGCTGATGCCCAACCCCCGGCCCTTTGATGGCTACATCGAGCATCCGGCGCGGGTGTCCTCCACATCGTTGATCAGCTTCC
AGCGCAACCGCTACAGCGTGCCGTGCGAGTGGGTCAATGCCATGGTGAGTGTGCGGGTGTACCACGATCACCTGATGGTGGTCTCGCCAGATGGGGAGTT
CATCCGGATCAAGCGCTGCTTTGAGCGGGACCAGACGATCTACGACTGGACGCACTACATCGCGCTGATCGAGCGCAAGCCTGGGGCGCTGCGCAACGGC
GCCCCATTCAGGACGATGCCCGAGCCATTGCGGCAATTACAGGACCAGTTATTACGGCACCCGGGTGGCGATCGGGTCATGGCGCAGGTGCTCAATGCAG
TCACCTTGCACGGTCTGGAGGCGGTGCTGGTGGCCGTGGAGCTGGCCTTGCAGACTGGAAGGGTCAGCGCTGAGCATGTACTGAACGTCCTCTCGCGCCT
GAAGGAGCCCAGTCGCAACAACGAGCCGGTGCACACCCACCTGAGCCTGAACAAGCCATCACAAGCCAATGTGGATCGGTATGACCGACTGCGGGCCCAG
CAATGGAGAGATCAGGAGGTGAACCATGCTTGACATGATTGCTGACTTCAAGGAGTTGGGACTGCACGGCATGGCCAGTGCCTGGCCAGAGGTTCAAGGC
ACGGCCCGCATCAAGTCGCTGGACCACGAAACGGTGCTGATGCAATTGATCAAGGCCGAGAAGGCGCAACGCGAGGTGCGCTCCATGGCTTATCAGATGC
GTGTGGCCCGATTCCCGGCGCATCGTGATCTGGTGGGCTTCGACTTCACGCAGGCCCATGTTGATGAGGCCTTGGTCCAGAAGCTCCATGGGCTAGAGTT
TGTGAACTCAGCGCACAACGTGGTGTTGGTGGGAGGCCCTGGCACGGGAAAAACCCATCTGGCCACCAGTCTGGGCGTTCAGGCTATCCGTGCGCATGGC
AAACGCGTGCGGTTCTTCTCCACGGTCGAGCTGGTCAACGCCCTGGAGCTGGAGAAGGCGCAAAACAAGACGGGCCAGATGGCCTACAGGCTGATGTACG
TGGACATGGTGATCCTGGATGAGATGGGCTATCTGCCATTCACCCAGTCCGGTGGGGCACTGCTGTTTCACTTGCTCTCCAAGCTGTACGAGCGCACCAG
CGTGGTGATCACAACCAACCTGAACTTCTCGGAATGGAGCAATGTGTTTGGGGATGCCAAGATGACCACGGCCCTGCTGGACCGGCTGACGCATCACTGC
CACATCGTGGAGACCGGCAATGAGAGTTGGCGGTTCAAGCATTCAACGGCAGCCGCCACACCCACCAAACCTCAGCGGGCAAAAGCCCAGAAAGGAGAAG
CCAAAGCCCCAGAGCAGATAGACTTATCCACAACCAACTGAacaaaacttccctaaaaccagtggctcaatattcaacgtgaacactggctcagtttggc
tgatgaatCAACA
ggaGTGATCAACGTGAGTACATTGAGCAAATTACGTCGTCTTGTTTTAAGAGACAACGTGTCCATTCGCGAGGCTAGCCGCCAGCTTGGAATTTCCCGCA
ATACGGCCAAGAAGTGGCTGGAGCAATCCGAGATGGTGGAGCCCCGCTATCCCAAACGGGCGTCAGGACCAGGCATATTGGGTCCCTACGAGGAGGTGCT
TACGCAGTGGCTCAAGTCCGACAGCCACCGCAACAAACGTGAGCGCCGAGGCACCAAGGCGCTGTTTGAGGGGCTGAGGGCGCTGGGTTACCCGGGCAGC
CGGGGCCCGGTTTACACCTTTGCCCTGCGTTGGCGCAAAGAGCAGGACTTGGCGGCCAAGGGCCAAGGTTATGTGCCCATGCACTTTGACATGGGCGAAG
CCTTCCAGTTTGACTGGAGCACTGAATACGCGGTCATTGGCGGTTTGCGCAGGCGTTTGGACTTGGCGCACACCAAGCTGGCGGCCAGCCGGGCGTTTGT
GCTGTCGGCCTATTACAACCAGGCGCACGAGATGCTGTTCGAGGCGCACGCCCGGGCCTTTGCCGTGTTTGGCGGGGTGACCAAGCGCGGGATCTACGAC
AACATGAAGACGGCGGTGGACAAGGTGGGGGACGGCAAGAAGCGCACCATCAACGCCCGCTTTGAGACGATGACGGGGCACTACCTGTTTGATCCCGAGT
TCTGCAACCGTGCAGCCGGCTGGGAGAAAGGCATTGTTGAGAAGAACGTTCAAGACCGACGCCGCGGCATCTGGCGCGAAGCCAGCGAGCGGCGCTGGAA
TTCACTTGAAGAGCTCAATGCCTGGCTGCAAAAGGCCTGTGTCGAGGCCTGGGAGCATCTACAGCATCCTGAGTGGGTGCACATGACGGTGGCCGATGTG
TACCAGGACGAGCGGCTGCGGCTGATGCCCAACCCCCGGCCCTTTGATGGCTACATCGAGCATCCGGCGCGGGTGTCCTCCACATCGTTGATCAGCTTCC
AGCGCAACCGCTACAGCGTGCCGTGCGAGTGGGTCAATGCCATGGTGAGTGTGCGGGTGTACCACGATCACCTGATGGTGGTCTCGCCAGATGGGGAGTT
CATCCGGATCAAGCGCTGCTTTGAGCGGGACCAGACGATCTACGACTGGACGCACTACATCGCGCTGATCGAGCGCAAGCCTGGGGCGCTGCGCAACGGC
GCCCCATTCAGGACGATGCCCGAGCCATTGCGGCAATTACAGGACCAGTTATTACGGCACCCGGGTGGCGATCGGGTCATGGCGCAGGTGCTCAATGCAG
TCACCTTGCACGGTCTGGAGGCGGTGCTGGTGGCCGTGGAGCTGGCCTTGCAGACTGGAAGGGTCAGCGCTGAGCATGTACTGAACGTCCTCTCGCGCCT
GAAGGAGCCCAGTCGCAACAACGAGCCGGTGCACACCCACCTGAGCCTGAACAAGCCATCACAAGCCAATGTGGATCGGTATGACCGACTGCGGGCCCAG
CAATGGAGAGATCAGGAGGTGAACCATGCTTGACATGATTGCTGACTTCAAGGAGTTGGGACTGCACGGCATGGCCAGTGCCTGGCCAGAGGTTCAAGGC
ACGGCCCGCATCAAGTCGCTGGACCACGAAACGGTGCTGATGCAATTGATCAAGGCCGAGAAGGCGCAACGCGAGGTGCGCTCCATGGCTTATCAGATGC
GTGTGGCCCGATTCCCGGCGCATCGTGATCTGGTGGGCTTCGACTTCACGCAGGCCCATGTTGATGAGGCCTTGGTCCAGAAGCTCCATGGGCTAGAGTT
TGTGAACTCAGCGCACAACGTGGTGTTGGTGGGAGGCCCTGGCACGGGAAAAACCCATCTGGCCACCAGTCTGGGCGTTCAGGCTATCCGTGCGCATGGC
AAACGCGTGCGGTTCTTCTCCACGGTCGAGCTGGTCAACGCCCTGGAGCTGGAGAAGGCGCAAAACAAGACGGGCCAGATGGCCTACAGGCTGATGTACG
TGGACATGGTGATCCTGGATGAGATGGGCTATCTGCCATTCACCCAGTCCGGTGGGGCACTGCTGTTTCACTTGCTCTCCAAGCTGTACGAGCGCACCAG
CGTGGTGATCACAACCAACCTGAACTTCTCGGAATGGAGCAATGTGTTTGGGGATGCCAAGATGACCACGGCCCTGCTGGACCGGCTGACGCATCACTGC
CACATCGTGGAGACCGGCAATGAGAGTTGGCGGTTCAAGCATTCAACGGCAGCCGCCACACCCACCAAACCTCAGCGGGCAAAAGCCCAGAAAGGAGAAG
CCAAAGCCCCAGAGCAGATAGACTTATCCACAACCAACTGAacaaaacttccctaaaaccagtggctcaatattcaacgtgaacactggctcagtttggc
tgatgaatCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1530 bp | 509 aa | 104 | 1633 | + | No |
Chemistry : DDE
ORF sequence :
MINVSTLSKLRRLVLRDNVSIREASRQLGISRNTAKKWLEQSEMVEPRYPKRASGPGILGPYEEVLTQWLKSDSHRNKRERRGTKALFEGLRALGYPGSR
GPVYTFALRWRKEQDLAAKGQGYVPMHFDMGEAFQFDWSTEYAVIGGLRRRLDLAHTKLAASRAFVLSAYYNQAHEMLFEAHARAFAVFGGVTKRGIYDN
MKTAVDKVGDGKKRTINARFETMTGHYLFDPEFCNRAAGWEKGIVEKNVQDRRRGIWREASERRWNSLEELNAWLQKACVEAWEHLQHPEWVHMTVADVY
QDERLRLMPNPRPFDGYIEHPARVSSTSLISFQRNRYSVPCEWVNAMVSVRVYHDHLMVVSPDGEFIRIKRCFERDQTIYDWTHYIALIERKPGALRNGA
PFRTMPEPLRQLQDQLLRHPGGDRVMAQVLNAVTLHGLEAVLVAVELALQTGRVSAEHVLNVLSRLKEPSRNNEPVHTHLSLNKPSQANVDRYDRLRAQQ
WRDQEVNHA
GPVYTFALRWRKEQDLAAKGQGYVPMHFDMGEAFQFDWSTEYAVIGGLRRRLDLAHTKLAASRAFVLSAYYNQAHEMLFEAHARAFAVFGGVTKRGIYDN
MKTAVDKVGDGKKRTINARFETMTGHYLFDPEFCNRAAGWEKGIVEKNVQDRRRGIWREASERRWNSLEELNAWLQKACVEAWEHLQHPEWVHMTVADVY
QDERLRLMPNPRPFDGYIEHPARVSSTSLISFQRNRYSVPCEWVNAMVSVRVYHDHLMVVSPDGEFIRIKRCFERDQTIYDWTHYIALIERKPGALRNGA
PFRTMPEPLRQLQDQLLRHPGGDRVMAQVLNAVTLHGLEAVLVAVELALQTGRVSAEHVLNVLSRLKEPSRNNEPVHTHLSLNKPSQANVDRYDRLRAQQ
WRDQEVNHA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
807 bp | 268 aa | 1635 | 2441 | + | No |
AG : IS21 helper
ORF sequence :
MIADFKELGLHGMASAWPEVQGTARIKSLDHETVLMQLIKAEKAQREVRSMAYQMRVARFPAHRDLVGFDFTQAHVDEALVQKLHGLEFVNSAHNVVLVG
GPGTGKTHLATSLGVQAIRAHGKRVRFFSTVELVNALELEKAQNKTGQMAYRLMYVDMVILDEMGYLPFTQSGGALLFHLLSKLYERTSVVITTNLNFSE
WSNVFGDAKMTTALLDRLTHHCHIVETGNESWRFKHSTAAATPTKPQRAKAQKGEAKAPEQIDLSTTN
GPGTGKTHLATSLGVQAIRAHGKRVRFFSTVELVNALELEKAQNKTGQMAYRLMYVDMVILDEMGYLPFTQSGGALLFHLLSKLYERTSVVITTNLNFSE
WSNVFGDAKMTTALLDRLTHHCHIVETGNESWRFKHSTAAATPTKPQRAKAQKGEAKAPEQIDLSTTN
Blast result :
Comments
ISLisp1 is 77% (transposase) and 84% (helper) aa similar to ISCsp4.
References