ISAlg1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
MDJD01000028 ND Algibacter sp.
Algibacter sp. SK-16
DNA section
IS Length : 959 bp

Ends


IR Length : 19/25

IRL : TAGAGGTCAGTATTTAAATGCGTATCTTATTGCTAATAAATATATTGAAT
IRR : TAGAGGTCAGTAGTTAGTTACTTATTAATTTTGATTGATATATTTTCTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTTACGGAAAATCTTATTATGGCTTT8

DNA sequence

TAGAGGTCAGTATTTAAATGCGTATCTTATTGCTAATAAATATATTGAATTATGGACATATTTCAAGGTCAAAATCTTCTAGAGTTCTCTGATCGCTTCA
AAACAGACGATAATTGTAAAGAATATTTAGCTCAAATCAAGGCTAAAATTCCTTTTAAATGTACTAGGTGTAATCATACAGCTTGTCAAACTCTCATTGA
TTATTCTCGTCAATGTAATATTTGTAGACATACAGAATCTGCTACTGCTGAGACACTTTTTCACAAAGTAAAGTTTGGTGTTCGAAAAGCATTTTTCATT
TGTTTTGAGATGGCCACAAGCACAAAAAGTTTATCAGCAAGTTATATGGGAGTCCGTTATGGTATCACAGAGAAAACGACTAGATTATTTATGTTAAAAA
TTAGAGAAGCAATGTCTTCTAGTGGAAATAATCCAATGGATGGAGAAGTTCATGTAGATGAATTTGTACTTGGTGGTAGAGAAGAAGGAAAAACAGGTAG
AAGTTATGATGGTAAGAAAAAGAAAGCTATAACAGCAGTTCAGCTAACAGAAAAAGGAAAAGTAAGAAGGATGTATGCTATGAAAATAGAGGACTTCTCG
GCGCAATCACTTCAATACATCTTTGTCAATCATATAGATCGGAAAGCTAAAGTAATCACCGATAAATGGAGAGGATACAGACCTATTGCTAAAGCCTATG
ATATTACTCAAATAGAGAGTAATAAAGGATTAAACTTCAAGGCAATTCATACAATGATACACCAAGTGAAATCTTGGATCAGAACAACTTATTCTTGGGT
GAGTGATGCTAATCTGAATAGATATTTTAATGAGTTCTGTTTTAGGATTAATAGATCACAGAGCAAGAATACAATATTCAACAACTTAGATAACTAAAAT
GGTTCGTGGAGAGAAAATATATCAATCAAAATTAATAAGTAACTAACTACTGACCTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
846 bp281 aa52897+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIFQGQNLLEFSDRFKTDDNCKEYLAQIKAKIPFKCTRCNHTACQTLIDYSRQCNICRHTESATAETLFHKVKFGVRKAFFICFEMATSTKSLSASYMG
VRYGITEKTTRLFMLKIREAMSSSGNNPMDGEVHVDEFVLGGREEGKTGRSYDGKKKKAITAVQLTEKGKVRRMYAMKIEDFSAQSLQYIFVNHIDRKAK
VITDKWRGYRPIAKAYDITQIESNKGLNFKAIHTMIHQVKSWIRTTYSWVSDANLNRYFNEFCFRINRSQSKNTIFNNLDN

 

Blast result :
Comments
ISAlg1 is 83% aa similar to ISFsu1.
References
1] ISfinder annotation (2016)
2] Wong,S.-K., Yoshizawa,S., Nakajima,Y., Ogura,Y., Tetsuya,H. and Hamasaki,K. (2016) Direct GenBank submission.