ISAal1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FMXE01000002 ND Algoriphagus alkaliphilus
Algoriphagus alkaliphilus DSM 22703
DNA section
IS Length : 957 bp

Ends


IR Length : 20/24

IRL : CTGAGGTAACCATTTAATTTCATATCTTTATCTATCATCAGACACAGAAA
IRR : CTGAGGTGACTATTTAGTGTCATACAATCGAGGGGATAACTAGTTTATCT

Insertion site


Left flankDirect repeatRight flankDR Length
CAACAAAGTAAAATTTTTTCTGGATACT8

DNA sequence

CTGAGGTAACCATTTAATTTCATATCTTTATCTATCATCAGACACAGAAAATGGACATTTATAAAGGACAGAGCCTCATAGAGTTTACTCAACGCTTCAA
AACCGAAGAAGATTGTAAAAAATACCTGAGTGAACTGAAGTGGGATAAGGGATTTACATGCAGGAAGTGCGGCCACAAGGGCAGTCAAATCCGCAAAGAC
TTTTCCAGAACCTGCAACAAGTGCAGTGATACCGAAAGCCCCAGTGCAGACACCTTGTTCCACAAAGTCAAATTTGGTCTTTTGAAGGCGTTTTACATCT
GTTTTGAAATGGCAACTACTACCAAAAGTCTTTCTGCTCTGCAGGTAGCTAAACGGTATACTGTTCGCCCTCAAACAGCCAGAATGTTTATGCACAAAGT
GCGTGAGGCAATGAAATCCAGTGAATCCCAACCCCTTACTGGGACAGTGCATGTCGATGAATTTGTAGTTGGCGGCAAAGAAACAGGACATGTAGGTAGA
GGGTACGGAGGAAAGAAGAAAAAGGTGGTCTGTGCAGTTGAATTGACTGATTCGGGGAAAGTGAAGCGGTTTTATGCCTTACAAATCAAGGATTTTTCAG
CCAAATCATTGCGCCCGATCTTCGAAAGGCATATCTCAAAAGAGGCTCAGGTTACCACCGACGAATGGAAAGGATATCGTCCCATAGCAGAAGAGTATTC
AATCAGTCAAATCCCAAGTAAGTTTGGTCTCAATTTCATCGCATTACACAACCTGATCCATCAAGTCAAATCATGGATCAGAACGACCTACTCCTGGGTA
AGCAAAAAGCACATTGAAAGATACATGAATGAATATTCTTACCGAATTAATAGGTCTCAGTCTAAGGAAACCATATTCCACAACTTGATAAAAAGGATGG
TTTCAGCAGATAAACTAGTTATCCCCTCGATTGTATGACACTAAATAGTCACCTCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
888 bp295 aa51938+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDIYKGQSLIEFTQRFKTEEDCKKYLSELKWDKGFTCRKCGHKGSQIRKDFSRTCNKCSDTESPSADTLFHKVKFGLLKAFYICFEMATTTKSLSALQVA
KRYTVRPQTARMFMHKVREAMKSSESQPLTGTVHVDEFVVGGKETGHVGRGYGGKKKKVVCAVELTDSGKVKRFYALQIKDFSAKSLRPIFERHISKEAQ
VTTDEWKGYRPIAEEYSISQIPSKFGLNFIALHNLIHQVKSWIRTTYSWVSKKHIERYMNEYSYRINRSQSKETIFHNLIKRMVSADKLVIPSIV

 

Blast result :
Comments
ISAal1 is 87% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Varghese,N. and Submissions,S. (2016) Direct submission.