ISPman1
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP005961 | ND | Pseudomonas mandelii | Pseudomonas mandelii JR-1 plasmid |
DNA section
IS Length : 2580 bp
Ends
IR Length : 24/27
IRL : TGTTGCCGCTGACCGAAAACTGACCCAGTAAAGGCTGTTCTGCCGACTGA
IRR : TGTTGGCGCTGATTGAAAACTGACCCACCCTGCCGATTGAAAATTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCGGTTGCG | AAACGAGTTC | 0 |
DNA sequence
TGTTGCCGCTGACCGAAAACTGACCCAGTAAAGGCTGTTCTGCCGACTGAAAACTGACCCAGGTGTTCAACTACTTCTGCTCACTTTCCGAGCAGGAGAA
CACAGGGTGATCAGCATGGAAATGTTGGGGAAAATTCGGAGGATGTACTTTCGCGACAAGCTGTCGCTGCACCAGATCGCCAAGCGTACCGGGCTGTCGA
GAAACACCATCCGAAAATGGGTCAGAGCACCCGAAGCCACTCAGCCGGCGTACCAGCGGGGCGCTACCTTCAACAAACTCAGTCCATTTCACGAGACGCT
GGAGCTGGCGCTCAAGGCCGATTCGTTTCGGGCAAAGCACAACCGCAGGAGTGCCAAAGCACTCTTCGAACAGATCAAGGCCGAGGGCTACGACGGCGGC
TACAGCCAGCTCACCGCCTTCATCCGTGCGTGGCGCGGCGAGCAAGGCAAGTCTTTACGGGCCTTTGTGCCGCTGACCTTTGCACTCGGGGAGGCCTTTC
AATTCGACTGGAGCGAAGAAGGTCTGCTGATCGGCGGCCTGTTCCGACGCATCCAGGTCTCCCATATGAAGCTGTGCGCCAGTCGCGCATTTTGGTTGGT
TGCGTATCCCAGCCAAGGCCACGAGATGTTGTTCGACGCCCATACCCGCTCGTTTGGCGCGTTAGGTGGGGTGCCGCGTCGCGGCATCTACGACAATATG
AAAACGGCTGTCGACAAGGTCAACAAAGGCAAAGGCCGCACAGTCAATGCCCGGTTTGCCGTCATGTGTGCCCACTACCTATTCGATCCGGACTTCTGCA
ACGTGGCCTCCGGCTGGGAAAAAGGCATCGTTGAAAAGAACGTTCAAGACAGCCGACGGCGCATCTGGCTCGATGCTCAAAACTGCATGTTCCATACCTT
CGAGGAATTGAATGCCTGGCTCGGCCAACGCTGCCGTGCGCTCTGGGACGAACTGGTGCACCCGCAGTACAACGGGCTGACAGTGGCGGACGTCCTGGAG
CTGGAACGCGCCGAATTGATGCCGATGCCGACTGCCTTTGATGGCTACGTCGAGCGCACCGTACGGGTCTCCAGCACCTGCCTGATCAGCGTGGCGCGAA
ATCGCTACTCGGTGCCGTGTGAGCGGGTCGGTCAGTGGGTCAGCAGCCGTTTGTATCCCACACGGGTGGTGGTCATCGCCGATGAAACGATGATCGCCAG
CCACGAGCGTCTGTTTGATCGAGATCAGGTCAGTTTTGACTGGCAGCATTACATCCCACTCATCGAACGCAAACCCGGTGCGCTGCGCAATGGCGCGCCG
TTTGCCGATCTGCCCAAGCCGTTACAGCTTCTCAAGCGGGGCCTGAGACGTCACAGCAACGGTGATCGAATCATGACGCAGGTACTGGCTGCTGTGCCCA
TCGCCGGTCTCGACCCGGTGCTCGTGGCGGTAGAACTGGTGCTTGAGTCGGGAAGCCTGAGCGCCGATCACATCCTGAATGTTCTAGCTCGACTGACCTC
TACTGCACCACCTCCTTCCGCCGAAACCAGCCTGCAACTCAAGGTAGCGCCTGTCGCCAATACAGCGCGCTACGACCGGCTCCGTACCACCGATGAGGAG
AATCGCAATGCGTGACCTAATGGCGGAACTCAAAGAACTGCGTCTGCATGGCATGGCCAGCGCCTGGGAGGAACTAGCCTCGCAAGGAGAAGCTTCGACG
GCATCCTCGAAATGGCTGCTCGAACATCTGCTTCAACAAGAACATGCAGATCGAGCAGTGCGCTCAGTGAATCATCAGATGAACATGGCCAAACTGCCCA
TGCATCGTGATTTGGCCGGCTTCGACTTCAGCGCTTCCAGCGCAGATGCCCGCCTGATCAGGGATCTGTCCAACCTGGAGTTCACCGATACCGCGCAGAA
TGTCGTGTTCATCGGCGGGCCTGGAACAGGCAAAACACACCTCGCCACCGCCTTGGCCGTTTCCGGGATCACGACGCATCACAAACGCGTGCGCTTCTAC
TCCACGGTGGATCTGGTCAATCTGCTGGAGCGCGAAAAGTACGACGGCAAGACGGGCCGCATCGCTCAAGGGCTGCTACGAACAGACCTGGTGATACTCG
ATGAACTGGGGTATTTGCCCTTCAGCCAGAGCGGTGGTGCCCTGTTATTTCATTTGCTGTCCAAGCTGTACGAGCACACCAGCGTGGTGATCACCACCAA
CCTCAGCTTCTCGGAATGGTCGAGCGTGTTTGGTGACGCCAAGATGACAACGGCGTTGCTGGATCGGCTGACACACCACTGCCACATCGTCGAAACGGGC
AACGAGTCCTACCGCCTGCAACACAGCAGCTTGGTCGCCCAGACCAAGATCAAATCACGTGAACGAAAGCGCAAAGACAATGATGGTGCCGAGGACGATG
AGCTGTTTTGATCCGCACCGAAAATACCCTGCCGCATGCCCACATGCGGTGGGGCTCGATGACCGTTCAACCGGGACACTACTGCTAAGCTTATTCACAA
TTGCTGGGACAAAAAACAGCAATCCGCCCTGGGTCAATTTTCAATCGGCAGGGTGGGTCAGTTTTCAATCAGCGCCAACA
CACAGGGTGATCAGCATGGAAATGTTGGGGAAAATTCGGAGGATGTACTTTCGCGACAAGCTGTCGCTGCACCAGATCGCCAAGCGTACCGGGCTGTCGA
GAAACACCATCCGAAAATGGGTCAGAGCACCCGAAGCCACTCAGCCGGCGTACCAGCGGGGCGCTACCTTCAACAAACTCAGTCCATTTCACGAGACGCT
GGAGCTGGCGCTCAAGGCCGATTCGTTTCGGGCAAAGCACAACCGCAGGAGTGCCAAAGCACTCTTCGAACAGATCAAGGCCGAGGGCTACGACGGCGGC
TACAGCCAGCTCACCGCCTTCATCCGTGCGTGGCGCGGCGAGCAAGGCAAGTCTTTACGGGCCTTTGTGCCGCTGACCTTTGCACTCGGGGAGGCCTTTC
AATTCGACTGGAGCGAAGAAGGTCTGCTGATCGGCGGCCTGTTCCGACGCATCCAGGTCTCCCATATGAAGCTGTGCGCCAGTCGCGCATTTTGGTTGGT
TGCGTATCCCAGCCAAGGCCACGAGATGTTGTTCGACGCCCATACCCGCTCGTTTGGCGCGTTAGGTGGGGTGCCGCGTCGCGGCATCTACGACAATATG
AAAACGGCTGTCGACAAGGTCAACAAAGGCAAAGGCCGCACAGTCAATGCCCGGTTTGCCGTCATGTGTGCCCACTACCTATTCGATCCGGACTTCTGCA
ACGTGGCCTCCGGCTGGGAAAAAGGCATCGTTGAAAAGAACGTTCAAGACAGCCGACGGCGCATCTGGCTCGATGCTCAAAACTGCATGTTCCATACCTT
CGAGGAATTGAATGCCTGGCTCGGCCAACGCTGCCGTGCGCTCTGGGACGAACTGGTGCACCCGCAGTACAACGGGCTGACAGTGGCGGACGTCCTGGAG
CTGGAACGCGCCGAATTGATGCCGATGCCGACTGCCTTTGATGGCTACGTCGAGCGCACCGTACGGGTCTCCAGCACCTGCCTGATCAGCGTGGCGCGAA
ATCGCTACTCGGTGCCGTGTGAGCGGGTCGGTCAGTGGGTCAGCAGCCGTTTGTATCCCACACGGGTGGTGGTCATCGCCGATGAAACGATGATCGCCAG
CCACGAGCGTCTGTTTGATCGAGATCAGGTCAGTTTTGACTGGCAGCATTACATCCCACTCATCGAACGCAAACCCGGTGCGCTGCGCAATGGCGCGCCG
TTTGCCGATCTGCCCAAGCCGTTACAGCTTCTCAAGCGGGGCCTGAGACGTCACAGCAACGGTGATCGAATCATGACGCAGGTACTGGCTGCTGTGCCCA
TCGCCGGTCTCGACCCGGTGCTCGTGGCGGTAGAACTGGTGCTTGAGTCGGGAAGCCTGAGCGCCGATCACATCCTGAATGTTCTAGCTCGACTGACCTC
TACTGCACCACCTCCTTCCGCCGAAACCAGCCTGCAACTCAAGGTAGCGCCTGTCGCCAATACAGCGCGCTACGACCGGCTCCGTACCACCGATGAGGAG
AATCGCAATGCGTGACCTAATGGCGGAACTCAAAGAACTGCGTCTGCATGGCATGGCCAGCGCCTGGGAGGAACTAGCCTCGCAAGGAGAAGCTTCGACG
GCATCCTCGAAATGGCTGCTCGAACATCTGCTTCAACAAGAACATGCAGATCGAGCAGTGCGCTCAGTGAATCATCAGATGAACATGGCCAAACTGCCCA
TGCATCGTGATTTGGCCGGCTTCGACTTCAGCGCTTCCAGCGCAGATGCCCGCCTGATCAGGGATCTGTCCAACCTGGAGTTCACCGATACCGCGCAGAA
TGTCGTGTTCATCGGCGGGCCTGGAACAGGCAAAACACACCTCGCCACCGCCTTGGCCGTTTCCGGGATCACGACGCATCACAAACGCGTGCGCTTCTAC
TCCACGGTGGATCTGGTCAATCTGCTGGAGCGCGAAAAGTACGACGGCAAGACGGGCCGCATCGCTCAAGGGCTGCTACGAACAGACCTGGTGATACTCG
ATGAACTGGGGTATTTGCCCTTCAGCCAGAGCGGTGGTGCCCTGTTATTTCATTTGCTGTCCAAGCTGTACGAGCACACCAGCGTGGTGATCACCACCAA
CCTCAGCTTCTCGGAATGGTCGAGCGTGTTTGGTGACGCCAAGATGACAACGGCGTTGCTGGATCGGCTGACACACCACTGCCACATCGTCGAAACGGGC
AACGAGTCCTACCGCCTGCAACACAGCAGCTTGGTCGCCCAGACCAAGATCAAATCACGTGAACGAAAGCGCAAAGACAATGATGGTGCCGAGGACGATG
AGCTGTTTTGATCCGCACCGAAAATACCCTGCCGCATGCCCACATGCGGTGGGGCTCGATGACCGTTCAACCGGGACACTACTGCTAAGCTTATTCACAA
TTGCTGGGACAAAAAACAGCAATCCGCCCTGGGTCAATTTTCAATCGGCAGGGTGGGTCAGTTTTCAATCAGCGCCAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1509 bp | 502 aa | 107 | 1615 | + | No |
Chemistry : DDE
ORF sequence :
MISMEMLGKIRRMYFRDKLSLHQIAKRTGLSRNTIRKWVRAPEATQPAYQRGATFNKLSPFHETLELALKADSFRAKHNRRSAKALFEQIKAEGYDGGYS
QLTAFIRAWRGEQGKSLRAFVPLTFALGEAFQFDWSEEGLLIGGLFRRIQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKT
AVDKVNKGKGRTVNARFAVMCAHYLFDPDFCNVASGWEKGIVEKNVQDSRRRIWLDAQNCMFHTFEELNAWLGQRCRALWDELVHPQYNGLTVADVLELE
RAELMPMPTAFDGYVERTVRVSSTCLISVARNRYSVPCERVGQWVSSRLYPTRVVVIADETMIASHERLFDRDQVSFDWQHYIPLIERKPGALRNGAPFA
DLPKPLQLLKRGLRRHSNGDRIMTQVLAAVPIAGLDPVLVAVELVLESGSLSADHILNVLARLTSTAPPPSAETSLQLKVAPVANTARYDRLRTTDEENR
NA
QLTAFIRAWRGEQGKSLRAFVPLTFALGEAFQFDWSEEGLLIGGLFRRIQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFGALGGVPRRGIYDNMKT
AVDKVNKGKGRTVNARFAVMCAHYLFDPDFCNVASGWEKGIVEKNVQDSRRRIWLDAQNCMFHTFEELNAWLGQRCRALWDELVHPQYNGLTVADVLELE
RAELMPMPTAFDGYVERTVRVSSTCLISVARNRYSVPCERVGQWVSSRLYPTRVVVIADETMIASHERLFDRDQVSFDWQHYIPLIERKPGALRNGAPFA
DLPKPLQLLKRGLRRHSNGDRIMTQVLAAVPIAGLDPVLVAVELVLESGSLSADHILNVLARLTSTAPPPSAETSLQLKVAPVANTARYDRLRTTDEENR
NA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
804 bp | 267 aa | 1608 | 2411 | + | No |
AG : IS21 helper
ORF sequence :
MRDLMAELKELRLHGMASAWEELASQGEASTASSKWLLEHLLQQEHADRAVRSVNHQMNMAKLPMHRDLAGFDFSASSADARLIRDLSNLEFTDTAQNVV
FIGGPGTGKTHLATALAVSGITTHHKRVRFYSTVDLVNLLEREKYDGKTGRIAQGLLRTDLVILDELGYLPFSQSGGALLFHLLSKLYEHTSVVITTNLS
FSEWSSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSSLVAQTKIKSRERKRKDNDGAEDDELF*
FIGGPGTGKTHLATALAVSGITTHHKRVRFYSTVDLVNLLEREKYDGKTGRIAQGLLRTDLVILDELGYLPFSQSGGALLFHLLSKLYEHTSVVITTNLS
FSEWSSVFGDAKMTTALLDRLTHHCHIVETGNESYRLQHSSLVAQTKIKSRERKRKDNDGAEDDELF*
Blast result :
Comments
ISPman1 is 98% (transposase) and 95% (IS21 helper) aa similar to ISPsy20.
References