ISCaha1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014227 | ND | Capnocytophaga haemolytica | Capnocytophaga haemolytica CCUG 32990 |
DNA section
IS Length : 955 bp
Ends
IR Length : 20/25
IRL : TTGAGGTGTCAAAGTATTTTCATATATTTGCACTCTGAAAATTAATGTAT
IRR : TTGAGGTGTCAAGTTAATGGCATATTAACAGAGGTTGGAAAATAGGTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTGAATAAATAACTTAA | ATAGATTATTTAGGAA | 0 |
DNA sequence
TTGAGGTGTCAAAGTATTTTCATATATTTGCACTCTGAAAATTAATGTATTATGGAATTATTCAAAGGACAAAGCCTCTTAGAGTTTACTGAACGCTTTA
AAACAGACTTAGATTGCGAAGAATACTTAGCTTCCATAAAATGGGAAAAAGGGTATTGTTGCCGTAAATGTGGACATACAAAATACCAAGTTCGCAAAGA
TTTTTCACGCACTTGCAATATCTGTTCAGATACAGAAAGTCCTACAGCTGGAACTTTGTTTCACAAGCTAAAATTTGGACTTCTCAAACCATTTTATATA
TGTTTTGAGATGTCAACAACTACAAAAAGTCTATCAGCATCACAAGTTGCTCGCCGTTATGATATTAGTCGACAAACAGCACATTATTTTATGCACAAGG
TTCGTGAAGCTATGAAATCCAGTGAGTCACAAAAAATGGATGGCAAAGTGCAAGTCGATGAATTTACCATAGGAGGAAAAGAAGAAGGAAAACAAGGTAG
AAGTTATGACACAAAGAAAAAGAAAGTTCTTTGTGCGATACAACTTAGTAACCAAGGTAAAGTTAAACGTTTTTATGCATTTAAAATTCCTGACTATTCC
TCAAAATCATTACGAACAATATTTGATAAACACATTGATAAGACAGCTTATATAACGACTAATGAATGGAAAGGCTATAGACCTATAAAGGACTATAATA
TAACTCAAAAACCGAGTAATGACGGAAAGAATTTTCCTACATTACACAAAGTAATACACCAAGTAAAATCTTGGATAAGAGGTATATATTCTTGGGTTTC
AGAGTTTAATATAGACCGCTATTTAGCTGAGTATAGTTTTAGAATCAATCGCTCACAAAGCAAAGAGACTATCTTTAACAGTTTAATAAAAAGAATGCTT
GAAAGAAAACCTATTTTCCAACCTCTGTTAATATGCCATTAACTTGACACCTCAA
AAACAGACTTAGATTGCGAAGAATACTTAGCTTCCATAAAATGGGAAAAAGGGTATTGTTGCCGTAAATGTGGACATACAAAATACCAAGTTCGCAAAGA
TTTTTCACGCACTTGCAATATCTGTTCAGATACAGAAAGTCCTACAGCTGGAACTTTGTTTCACAAGCTAAAATTTGGACTTCTCAAACCATTTTATATA
TGTTTTGAGATGTCAACAACTACAAAAAGTCTATCAGCATCACAAGTTGCTCGCCGTTATGATATTAGTCGACAAACAGCACATTATTTTATGCACAAGG
TTCGTGAAGCTATGAAATCCAGTGAGTCACAAAAAATGGATGGCAAAGTGCAAGTCGATGAATTTACCATAGGAGGAAAAGAAGAAGGAAAACAAGGTAG
AAGTTATGACACAAAGAAAAAGAAAGTTCTTTGTGCGATACAACTTAGTAACCAAGGTAAAGTTAAACGTTTTTATGCATTTAAAATTCCTGACTATTCC
TCAAAATCATTACGAACAATATTTGATAAACACATTGATAAGACAGCTTATATAACGACTAATGAATGGAAAGGCTATAGACCTATAAAGGACTATAATA
TAACTCAAAAACCGAGTAATGACGGAAAGAATTTTCCTACATTACACAAAGTAATACACCAAGTAAAATCTTGGATAAGAGGTATATATTCTTGGGTTTC
AGAGTTTAATATAGACCGCTATTTAGCTGAGTATAGTTTTAGAATCAATCGCTCACAAAGCAAAGAGACTATCTTTAACAGTTTAATAAAAAGAATGCTT
GAAAGAAAACCTATTTTCCAACCTCTGTTAATATGCCATTAACTTGACACCTCAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
891 bp | 296 aa | 52 | 942 | + | No |
Chemistry : DDE
ORF sequence :
MELFKGQSLLEFTERFKTDLDCEEYLASIKWEKGYCCRKCGHTKYQVRKDFSRTCNICSDTESPTAGTLFHKLKFGLLKPFYICFEMSTTTKSLSASQVA
RRYDISRQTAHYFMHKVREAMKSSESQKMDGKVQVDEFTIGGKEEGKQGRSYDTKKKKVLCAIQLSNQGKVKRFYAFKIPDYSSKSLRTIFDKHIDKTAY
ITTNEWKGYRPIKDYNITQKPSNDGKNFPTLHKVIHQVKSWIRGIYSWVSEFNIDRYLAEYSFRINRSQSKETIFNSLIKRMLERKPIFQPLLICH
RRYDISRQTAHYFMHKVREAMKSSESQKMDGKVQVDEFTIGGKEEGKQGRSYDTKKKKVLCAIQLSNQGKVKRFYAFKIPDYSSKSLRTIFDKHIDKTAY
ITTNEWKGYRPIKDYNITQKPSNDGKNFPTLHKVIHQVKSWIRGIYSWVSEFNIDRYLAEYSFRINRSQSKETIFNSLIKRMLERKPIFQPLLICH
Blast result :
Comments
ISCaha1 is 81% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Holder,M.E., Ajami,N.J. and Petrosino,J.F. (2016) Direct GenBank submission.
2] Holder,M.E., Ajami,N.J. and Petrosino,J.F. (2016) Direct GenBank submission.