ISCaha1

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014227 ND Capnocytophaga haemolytica
Capnocytophaga haemolytica CCUG 32990
DNA section
IS Length : 955 bp

Ends


IR Length : 20/25

IRL : TTGAGGTGTCAAAGTATTTTCATATATTTGCACTCTGAAAATTAATGTAT
IRR : TTGAGGTGTCAAGTTAATGGCATATTAACAGAGGTTGGAAAATAGGTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTCTGAATAAATAACTTAAATAGATTATTTAGGAA0

DNA sequence

TTGAGGTGTCAAAGTATTTTCATATATTTGCACTCTGAAAATTAATGTATTATGGAATTATTCAAAGGACAAAGCCTCTTAGAGTTTACTGAACGCTTTA
AAACAGACTTAGATTGCGAAGAATACTTAGCTTCCATAAAATGGGAAAAAGGGTATTGTTGCCGTAAATGTGGACATACAAAATACCAAGTTCGCAAAGA
TTTTTCACGCACTTGCAATATCTGTTCAGATACAGAAAGTCCTACAGCTGGAACTTTGTTTCACAAGCTAAAATTTGGACTTCTCAAACCATTTTATATA
TGTTTTGAGATGTCAACAACTACAAAAAGTCTATCAGCATCACAAGTTGCTCGCCGTTATGATATTAGTCGACAAACAGCACATTATTTTATGCACAAGG
TTCGTGAAGCTATGAAATCCAGTGAGTCACAAAAAATGGATGGCAAAGTGCAAGTCGATGAATTTACCATAGGAGGAAAAGAAGAAGGAAAACAAGGTAG
AAGTTATGACACAAAGAAAAAGAAAGTTCTTTGTGCGATACAACTTAGTAACCAAGGTAAAGTTAAACGTTTTTATGCATTTAAAATTCCTGACTATTCC
TCAAAATCATTACGAACAATATTTGATAAACACATTGATAAGACAGCTTATATAACGACTAATGAATGGAAAGGCTATAGACCTATAAAGGACTATAATA
TAACTCAAAAACCGAGTAATGACGGAAAGAATTTTCCTACATTACACAAAGTAATACACCAAGTAAAATCTTGGATAAGAGGTATATATTCTTGGGTTTC
AGAGTTTAATATAGACCGCTATTTAGCTGAGTATAGTTTTAGAATCAATCGCTCACAAAGCAAAGAGACTATCTTTAACAGTTTAATAAAAAGAATGCTT
GAAAGAAAACCTATTTTCCAACCTCTGTTAATATGCCATTAACTTGACACCTCAA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
891 bp296 aa52942+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELFKGQSLLEFTERFKTDLDCEEYLASIKWEKGYCCRKCGHTKYQVRKDFSRTCNICSDTESPTAGTLFHKLKFGLLKPFYICFEMSTTTKSLSASQVA
RRYDISRQTAHYFMHKVREAMKSSESQKMDGKVQVDEFTIGGKEEGKQGRSYDTKKKKVLCAIQLSNQGKVKRFYAFKIPDYSSKSLRTIFDKHIDKTAY
ITTNEWKGYRPIKDYNITQKPSNDGKNFPTLHKVIHQVKSWIRGIYSWVSEFNIDRYLAEYSFRINRSQSKETIFNSLIKRMLERKPIFQPLLICH

 

Blast result :
Comments
ISCaha1 is 81% aa similar to ISEvi1.
References
1] ISfinder annotation (2016)
2] Holder,M.E., Ajami,N.J. and Petrosino,J.F. (2016) Direct GenBank submission.