ISUnb2
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP013118 | ND | bacterium L21-Spi-D4 | bacterium L21-Spi-D4 |
DNA section
IS Length : 970 bp
Ends
IR Length : 19/25
IRL : TAGAGGTCAGTAGATAAATTCATATATTATATTATCTTTGATGTCAATAA
IRR : TAGAGGTCGTTATTTAACTACATATTAAATCAGCTTGAGTTACTTTATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAAAAGAT TAAATAAA | TAAAATAAA ATAAGCAACATGTC | 0 |
DNA sequence
TAGAGGTCAGTAGATAAATTCATATATTATATTATCTTTGATGTCAATAAAATCAATGTTTTCATGGAACTATTCAAAGGACAAAACCTCATAGAGTTTG
CTACACGTTTCAATTCTGATGAAAAGTGTATTGAATATTTGGCTCATATAAAATGGCAAGAAGGCTTTAAATGTGTAAAATGTGGCCACACAGGAAGCCA
AATCCGAAAAAATCATTCAAGAACATGTAATAAGTGTAGTCATACAGAATCAGCTACTGCTAACACATTATTCCACAAAGTTAAATTTGGTGTCCAAAAA
GCCTTTTTTATTTGCTTTGAAATGGCAACTACAACCAAAAGTTTATCGGCAAGCTATGTGTCAGAGCGCTTTGGAGTAACAGAAAAGACAGCTCGACTTT
TTATGCATAAAGTACGAGAAGCGATGAAGTCAAGTGGTAACAATCCAATGAATGGAAATGTGCATATTGATGAGTTTGTGATTGGTGGCAAGGAGGAAGG
AAAGGTTGGGCGTAGTTATAATGTTAAGAAAAAGAAAGTTATATGTGCAGTAGAGCTCACTGATGATGGTAAAGTTAAACGCATGTACTCTATGAAAATA
GACAATTATTCATCGAAAGAGCTAAGGAAAATGTTCGATGCGCATATTTCTAAAGAAGCAAAGATCACAACAGATCAATGGAAGGGTTATCATCCCCTGA
TGTCAAAATATGACATAACGCAAATTGAGAGTAATGGTGGCTTAAACTTTAAGGCTTTGCACACGATGATCCATCAAGTTAAATCCTGTATAAGAACGAC
TTATTCATGGGTTAGCGTTCATAACATTAACAGATACCTTGACGAGTTTTGCTACCGAATCAATCGTTCTCAAATGAAAAAGAACATTTTCAATAATTTG
GTACATCGAATGGTTGAGGCTGATAAAGTAACTCAAGCTGATTTAATATGTAGTTAAATAACGACCTCTA
CTACACGTTTCAATTCTGATGAAAAGTGTATTGAATATTTGGCTCATATAAAATGGCAAGAAGGCTTTAAATGTGTAAAATGTGGCCACACAGGAAGCCA
AATCCGAAAAAATCATTCAAGAACATGTAATAAGTGTAGTCATACAGAATCAGCTACTGCTAACACATTATTCCACAAAGTTAAATTTGGTGTCCAAAAA
GCCTTTTTTATTTGCTTTGAAATGGCAACTACAACCAAAAGTTTATCGGCAAGCTATGTGTCAGAGCGCTTTGGAGTAACAGAAAAGACAGCTCGACTTT
TTATGCATAAAGTACGAGAAGCGATGAAGTCAAGTGGTAACAATCCAATGAATGGAAATGTGCATATTGATGAGTTTGTGATTGGTGGCAAGGAGGAAGG
AAAGGTTGGGCGTAGTTATAATGTTAAGAAAAAGAAAGTTATATGTGCAGTAGAGCTCACTGATGATGGTAAAGTTAAACGCATGTACTCTATGAAAATA
GACAATTATTCATCGAAAGAGCTAAGGAAAATGTTCGATGCGCATATTTCTAAAGAAGCAAAGATCACAACAGATCAATGGAAGGGTTATCATCCCCTGA
TGTCAAAATATGACATAACGCAAATTGAGAGTAATGGTGGCTTAAACTTTAAGGCTTTGCACACGATGATCCATCAAGTTAAATCCTGTATAAGAACGAC
TTATTCATGGGTTAGCGTTCATAACATTAACAGATACCTTGACGAGTTTTGCTACCGAATCAATCGTTCTCAAATGAAAAAGAACATTTTCAATAATTTG
GTACATCGAATGGTTGAGGCTGATAAAGTAACTCAAGCTGATTTAATATGTAGTTAAATAACGACCTCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 64 | 957 | + | No |
Chemistry : DDE
ORF sequence :
MELFKGQNLIEFATRFNSDEKCIEYLAHIKWQEGFKCVKCGHTGSQIRKNHSRTCNKCSHTESATANTLFHKVKFGVQKAFFICFEMATTTKSLSASYVS
ERFGVTEKTARLFMHKVREAMKSSGNNPMNGNVHIDEFVIGGKEEGKVGRSYNVKKKKVICAVELTDDGKVKRMYSMKIDNYSSKELRKMFDAHISKEAK
ITTDQWKGYHPLMSKYDITQIESNGGLNFKALHTMIHQVKSCIRTTYSWVSVHNINRYLDEFCYRINRSQMKKNIFNNLVHRMVEADKVTQADLICS
ERFGVTEKTARLFMHKVREAMKSSGNNPMNGNVHIDEFVIGGKEEGKVGRSYNVKKKKVICAVELTDDGKVKRMYSMKIDNYSSKELRKMFDAHISKEAK
ITTDQWKGYHPLMSKYDITQIESNGGLNFKALHTMIHQVKSCIRTTYSWVSVHNINRYLDEFCYRINRSQMKKNIFNNLVHRMVEADKVTQADLICS
Blast result :
Comments
ISUnb2 is 96% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Spring,S., Bunk,B., Sproer,C. and Klenk,H.-P. (2015) Direct GenBank submission.
2] Spring,S., Bunk,B., Sproer,C. and Klenk,H.-P. (2015) Direct GenBank submission.