ISUnb2

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP013118 ND bacterium L21-Spi-D4
bacterium L21-Spi-D4
DNA section
IS Length : 970 bp

Ends


IR Length : 19/25

IRL : TAGAGGTCAGTAGATAAATTCATATATTATATTATCTTTGATGTCAATAA
IRR : TAGAGGTCGTTATTTAACTACATATTAAATCAGCTTGAGTTACTTTATCA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAAAAGAT TAAATAAATAAAATAAA ATAAGCAACATGTC0

DNA sequence

TAGAGGTCAGTAGATAAATTCATATATTATATTATCTTTGATGTCAATAAAATCAATGTTTTCATGGAACTATTCAAAGGACAAAACCTCATAGAGTTTG
CTACACGTTTCAATTCTGATGAAAAGTGTATTGAATATTTGGCTCATATAAAATGGCAAGAAGGCTTTAAATGTGTAAAATGTGGCCACACAGGAAGCCA
AATCCGAAAAAATCATTCAAGAACATGTAATAAGTGTAGTCATACAGAATCAGCTACTGCTAACACATTATTCCACAAAGTTAAATTTGGTGTCCAAAAA
GCCTTTTTTATTTGCTTTGAAATGGCAACTACAACCAAAAGTTTATCGGCAAGCTATGTGTCAGAGCGCTTTGGAGTAACAGAAAAGACAGCTCGACTTT
TTATGCATAAAGTACGAGAAGCGATGAAGTCAAGTGGTAACAATCCAATGAATGGAAATGTGCATATTGATGAGTTTGTGATTGGTGGCAAGGAGGAAGG
AAAGGTTGGGCGTAGTTATAATGTTAAGAAAAAGAAAGTTATATGTGCAGTAGAGCTCACTGATGATGGTAAAGTTAAACGCATGTACTCTATGAAAATA
GACAATTATTCATCGAAAGAGCTAAGGAAAATGTTCGATGCGCATATTTCTAAAGAAGCAAAGATCACAACAGATCAATGGAAGGGTTATCATCCCCTGA
TGTCAAAATATGACATAACGCAAATTGAGAGTAATGGTGGCTTAAACTTTAAGGCTTTGCACACGATGATCCATCAAGTTAAATCCTGTATAAGAACGAC
TTATTCATGGGTTAGCGTTCATAACATTAACAGATACCTTGACGAGTTTTGCTACCGAATCAATCGTTCTCAAATGAAAAAGAACATTTTCAATAATTTG
GTACATCGAATGGTTGAGGCTGATAAAGTAACTCAAGCTGATTTAATATGTAGTTAAATAACGACCTCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
894 bp297 aa64957+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELFKGQNLIEFATRFNSDEKCIEYLAHIKWQEGFKCVKCGHTGSQIRKNHSRTCNKCSHTESATANTLFHKVKFGVQKAFFICFEMATTTKSLSASYVS
ERFGVTEKTARLFMHKVREAMKSSGNNPMNGNVHIDEFVIGGKEEGKVGRSYNVKKKKVICAVELTDDGKVKRMYSMKIDNYSSKELRKMFDAHISKEAK
ITTDQWKGYHPLMSKYDITQIESNGGLNFKALHTMIHQVKSCIRTTYSWVSVHNINRYLDEFCYRINRSQMKKNIFNNLVHRMVEADKVTQADLICS

 

Blast result :
Comments
ISUnb2 is 96% aa similar to ISUnb1.
References
1] ISfinder annotation (2016)
2] Spring,S., Bunk,B., Sproer,C. and Klenk,H.-P. (2015) Direct GenBank submission.