ISfinder Mirror Site

ISEvi1

Family IS1595
Group ISSod11

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
CP003346	ND	Echinicola vietnamensis	Echinicola vietnamensis DSM 17526

DNA section

IS Length : 957 bp

Ends

IR Length : 22/25

IRL : TAGAGGTGACCGTTTAATTTCATATATTTATGCTTTTAAACAAGCAGATA
IRR : TAGAGGTGACCAGTTAATATCATATTAAGTCAGCAATATGGATTTTTTTC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
GAGTCCTTTT	TAATTTGA	TTTTCTACAT	8
CTAATTCAAA	TAAAATAA	TTGAACAGTT	8
CTCCACTAAT	TAAGTCTT	TTACTGTTAA	8

DNA sequence

TAGAGGTGACCGTTTAATTTCATATATTTATGCTTTTAAACAAGCAGATAATGGATGTTTTCAAAGGACAAGAGCTTATAGAGTTCAGTAGAAGGTTCCA
GACCGAGTTGGATTGTAAGAAATATTTGTCCGAACTTAAGTGGAAAGATGGATTTACGTGTCGCAAGTGTGGTCATCAGGGTAGCCAGATCAGAAAGGAT
TACGCACGTACCTGCAATAAATGTAGCGATACAGAAAGTGCTGGCGCAGGCACCCTTTTCCATAAAGTCAAATTTGGTCTTGTAAAGGCATTTTATATCT
GTTTTGAGATGAGCACAAGTACCAAAAGTCTCTCTGCGATGTATATGGCCAAACGGTATGGCATTAACCGTAAAACAGCCATGAGCTTCATGCATAAAGT
ACGTGAGGCCATGAAATCGAGCGGAAATCATCCGATGAAGGGAGAAGTTCATGTGGACGAATTCGTAGTAGGGGGCCAAGAAGCCGGACATACCGGAAGG
AGCTATGGAGGTAAGAAAAAGAAGGTAGTATGCGCGGTAGAACTTACTGATGCAGGAAAAGTCAAACGGTTTTATGCTTTACAGATCAAGGATTTTTCAG
CCAAATCACTACGTCCCATCTTTGAGAGCCACATCGACAGGGGTGCCCAAGTTCAGACAGACGAATGGAAAGGGTATCGTCCTATCAAAAATGACTTTAC
CATCAAACAGACTCCCAGTGAATTAGGCTTAAATTTTAAAGCAATTCACACCATGATCCATCAGGTAAAATCGTGGTTAAGGACGACGTTTTCCTGGGTA
AGCAAAAGGCATATAGACCGCTACCTAAGTGAGTTTTCCTACAGAATCAACCGCTCACAGAGCAAGGACACGATCTTCCACAATTTGATCACCAGAATGG
TCAGTAAGAAAAAAATCCATATTGCTGACTTAATATGATATTAACTGGTCACCTCTA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
888 bp	295 aa	51	938	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVFKGQELIEFSRRFQTELDCKKYLSELKWKDGFTCRKCGHQGSQIRKDYARTCNKCSDTESAGAGTLFHKVKFGLVKAFYICFEMSTSTKSLSAMYMA
KRYGINRKTAMSFMHKVREAMKSSGNHPMKGEVHVDEFVVGGQEAGHTGRSYGGKKKKVVCAVELTDAGKVKRFYALQIKDFSAKSLRPIFESHIDRGAQ
VQTDEWKGYRPIKNDFTIKQTPSELGLNFKAIHTMIHQVKSWLRTTFSWVSKRHIDRYLSEFSYRINRSQSKDTIFHNLITRMVSKKKIHIADLI

Blast result :

Comments

ISEvi1 is 64% aa similar to ISPrsp1.

References

1] ISfinder annotation (2016)
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Peters,L., Ovchinnikova,G., Teshima,H., Kyrpides,N., Mavromatis,K., Ivanova,N., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2012) Direct GenBank submission.