ISVapa2

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LKTU01000151 ND Variovorax paradoxus
Variovorax paradoxus H112
DNA section
IS Length : 2623 bp

Ends


IR Length : 21/28

IRL : tgttggcgccgaccggaaactgagccacttttgtaggtagtgccgaagta
IRR : tgtccgcgccgaagtagaactgagccaccgcgccgcttgaatcgtgagcc

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

TGTTGGCGCCGACCGGAAACTGAGCCACTTTTGTAGGTAGTGCCGAAGTAAAAGTGAGCCAGGTGTTCAACCTACCCTGCTGTTTATTTAAGCAGCGGGG
TTCCAGGAGTGATCACCATGGACATGATTGGCAGGATCCGGCGGCTCCACGTGAGGGACAAGCTGTCGGAGCGCGAGATCGCGCGCATGACGGGGCTGTC
CCGCAACACGGTCTCCAAGTGGCTGCGCGCACCGATCAACGAGTCGCCGAAGTACCGGCGTGAACCGCGCCCGAACAAGCTCAGCGCGTTCGAGGCGACA
CTGAGGCAGGCATTGACGGCCGATGCAAGGCGGCCCAAGCACGAGCGCCGCACAGCCCGCGCGCTGCATGCTGAGATCAAGGCCGCGGGCTACGGCGGCG
GTTATTCGGCCGTCACCGACTTCGTTCGGGCCTGGCGCCAGGGCGAGGGGCAATCGGTCAACGTCACGGCCTACGTTCCCTTGACCTTCGAGCTCGGCGA
GGCCTTCCAGTTCGATTGGAGCGAGGAAGGCCTGGTCGTCGGTGGCATCTACTATCGGGTGCAGGTTGCGCACCTGAAGTTGTGCGCGAGCCGCGCCTTT
TGGCTGGTCGCCTACCCGAGCCAGGGTCACGAGATGCTGTTCGACGCCCACACCAGATCGTTCGCTGCGCTGGGCGGCGTGGCCCGTCGCGGAATCTACG
ACAACATGCGTACCGCCGTCGACAAGGTCCACAAGGGCAAGGGGCGCACTGTCAACGCGCGCTTCGCGGTGATGTGTGCCCACTACCTGTACGACCCCGA
CTTCTGCAACGTCGCTTCCGGCTGGGAGAAGGGGCGCGTGGAGAAGAACGTGCAGGATAGCCGCCGGCGCATCTGGATCGAGGCGGCCCGGCGCCGCTTC
GGCTCCTTCGTCGAACTCAACGCTTGGCTGGGCGAGCGCTGCCGGGCCCTGTGGAACGAGGTCCGGCATCCCGAGCACGGCCAGTTCAGTGTGGCCGAGA
TGCTCGAACACGAGCGCCCCCACCTGATGCCCATGCCCGAGCCCTTCGACGGCTACGTGGAGAAGCCCGCGCGGGTGTCGAGCACCTGCCTGGTGTCGGT
GGCGCGCAATCGCTACTCAGTGCCGTGCGAGTTGGCCGGGCAGATGGTCAGCACGCGGCTGTACCCGGGCAGCGTGGTGATCGTCGCCGACGATGCGGTC
GTCGCGCGCCACGAGCGGATGAGCGATTCGGGCGGCACCCGCTACGACTGGCAGCACTACATTCCGCTGGTGCAGCGCAAGCCCGGCGCGTTGAGGAACG
GCGCACCCTTCGCCGACATGCCCGAGGCGCTGCAGCGCCTGCGCCGTGGTCTGCTGCGCCAAGTCGGCGGGGACCGCGTGATGGCCCAGGTGCTGGCCAT
CGTGCCCACGGCCGGTCTGGATGCGGTGATCGTGGCGGTCGAGTTGGCGATGGAGAACGGACCGCCATCCGGGCGTGTCAGCGTGGAGCATGTCGTCAAC
GTGCTCGGCCGGCTCAACGCGCCGGCAACGCCGCCAAGCGCCGAGACGGCGTTGCAGGTCGCCACACCGCCGCTGGCCAACACGGCTCGCTACGACAGCC
TGCGTGGTCAGGAGGTGGGCCATGCGTGACGTCACCGTTGAGCTCAAGGCATTGCGCCTGCACGGCATGGCCAGTGCCTGGTGCGATCTGCAGGAGCAAG
GGCCGGCCTCGGGTCTGGAGGCCTCGCGCTGGCTGGTCGAGCATCTGTTGCAAGCCGAGTCGACGGACCGGGCGATGCGCTCGGTCCAGTACCAGATGAC
CTCGGCGCGCTTCCCCGTGCACCGGGATCTGGCGGGCTTCGACTTCGATGCCTCGCCAGTGGACCAGAAGCTGATCCAGCAGCTCGCGACGCTGGAGTTC
ACCGAGGCTGCGCACAACGCCGTGCTGGTCGGCGGACCGGGCACAGGCAAGACCCATCTGGCCACGGCCCTGGGGGTGTCGGGCATCGTGCGCCAAGGCA
AGCGCGTGCGGTTCTACTCAACGGTCGATCTGGTCAACGCGCTCGAGCAGGAGAAGGCCCAGGGCAAGGCCGGACGGATCGCCAGTGGTCTGCTGCGCAT
GGACCTGGTGATCCTGGATGAGTTGGGCTACCTGCCGTTCAGTCAAGCCGGCGGCGCGTTGCTGTTCCATCTGCTGAGCAAGCTGTACGAGCACACCAGC
GTGGTGATCACCACCAACCTGGACTTCGCCGAGTGGTCGACGGTGTTCGGCGACGCGAAGATGACCACCGCCTTGCTCGACCGCCTGACGCACCACTGCC
ACATCGTGGAGACGGGCAACGAGAGCCATCGCTTCCTGCACAGCAGCGCGACTGCCAAGAAGCGCATCAAGGCCAGGGAGCAGGCCCGCAAGGGCAGCAG
CAAGAGCGACTCAAACGACTCCACTGACTGACGCTGCTGACCCAGACAGGGCGCTGCGGGCTTCGCCCTGCGCGCCCTATGAGTTCGATCACAGAACCCA
AAAGGAGATCCAAGAACAAGCAACGCCATACACTTATCCACAGTCGACCATTGCTGCGTCGGCTTCCACCCCTGGCTCACGATTCAAGCGGCGCGGTGGC
TCAGTTCTACTTCGGCGCGGACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1512 bp503 aa1181629+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDMIGRIRRLHVRDKLSEREIARMTGLSRNTVSKWLRAPINESPKYRREPRPNKLSAFEATLRQALTADARRPKHERRTARALHAEIKAAGYGGGYSAVT
DFVRAWRQGEGQSVNVTAYVPLTFELGEAFQFDWSEEGLVVGGIYYRVQVAHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMRTA
VDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGRVEKNVQDSRRRIWIEAARRRFGSFVELNAWLGERCRALWNEVRHPEHGQFSVAEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYPGSVVIVADDAVVARHERMSDSGGTRYDWQHYIPLVQRKPGALRNGAPFAD
MPEALQRLRRGLLRQVGGDRVMAQVLAIVPTAGLDAVIVAVELAMENGPPSGRVSVEHVVNVLGRLNAPATPPSAETALQVATPPLANTARYDSLRGQEV
GHA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
765 bp254 aa16672431+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MASAWCDLQEQGPASGLEASRWLVEHLLQAESTDRAMRSVQYQMTSARFPVHRDLAGFDFDASPVDQKLIQQLATLEFTEAAHNAVLVGGPGTGKTHLAT
ALGVSGIVRQGKRVRFYSTVDLVNALEQEKAQGKAGRIASGLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNLDFAEWSTVFGDAKMT
TALLDRLTHHCHIVETGNESHRFLHSSATAKKRIKAREQARKGSSKSDSNDSTD

 

Blast result :
Comments
ISVapa2 is 89% (transposase) and 90% (IS21 helper) aa similar to ISJsp3.
References