ISVapa2
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LKTU01000151 | ND | Variovorax paradoxus | Variovorax paradoxus H112 |
DNA section
IS Length : 2623 bp
Ends
IR Length : 21/28
IRL : tgttggcgccgaccggaaactgagccacttttgtaggtagtgccgaagta
IRR : tgtccgcgccgaagtagaactgagccaccgcgccgcttgaatcgtgagcc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGTTGGCGCCGACCGGAAACTGAGCCACTTTTGTAGGTAGTGCCGAAGTAAAAGTGAGCCAGGTGTTCAACCTACCCTGCTGTTTATTTAAGCAGCGGGG
TTCCAGGAGTGATCACCATGGACATGATTGGCAGGATCCGGCGGCTCCACGTGAGGGACAAGCTGTCGGAGCGCGAGATCGCGCGCATGACGGGGCTGTC
CCGCAACACGGTCTCCAAGTGGCTGCGCGCACCGATCAACGAGTCGCCGAAGTACCGGCGTGAACCGCGCCCGAACAAGCTCAGCGCGTTCGAGGCGACA
CTGAGGCAGGCATTGACGGCCGATGCAAGGCGGCCCAAGCACGAGCGCCGCACAGCCCGCGCGCTGCATGCTGAGATCAAGGCCGCGGGCTACGGCGGCG
GTTATTCGGCCGTCACCGACTTCGTTCGGGCCTGGCGCCAGGGCGAGGGGCAATCGGTCAACGTCACGGCCTACGTTCCCTTGACCTTCGAGCTCGGCGA
GGCCTTCCAGTTCGATTGGAGCGAGGAAGGCCTGGTCGTCGGTGGCATCTACTATCGGGTGCAGGTTGCGCACCTGAAGTTGTGCGCGAGCCGCGCCTTT
TGGCTGGTCGCCTACCCGAGCCAGGGTCACGAGATGCTGTTCGACGCCCACACCAGATCGTTCGCTGCGCTGGGCGGCGTGGCCCGTCGCGGAATCTACG
ACAACATGCGTACCGCCGTCGACAAGGTCCACAAGGGCAAGGGGCGCACTGTCAACGCGCGCTTCGCGGTGATGTGTGCCCACTACCTGTACGACCCCGA
CTTCTGCAACGTCGCTTCCGGCTGGGAGAAGGGGCGCGTGGAGAAGAACGTGCAGGATAGCCGCCGGCGCATCTGGATCGAGGCGGCCCGGCGCCGCTTC
GGCTCCTTCGTCGAACTCAACGCTTGGCTGGGCGAGCGCTGCCGGGCCCTGTGGAACGAGGTCCGGCATCCCGAGCACGGCCAGTTCAGTGTGGCCGAGA
TGCTCGAACACGAGCGCCCCCACCTGATGCCCATGCCCGAGCCCTTCGACGGCTACGTGGAGAAGCCCGCGCGGGTGTCGAGCACCTGCCTGGTGTCGGT
GGCGCGCAATCGCTACTCAGTGCCGTGCGAGTTGGCCGGGCAGATGGTCAGCACGCGGCTGTACCCGGGCAGCGTGGTGATCGTCGCCGACGATGCGGTC
GTCGCGCGCCACGAGCGGATGAGCGATTCGGGCGGCACCCGCTACGACTGGCAGCACTACATTCCGCTGGTGCAGCGCAAGCCCGGCGCGTTGAGGAACG
GCGCACCCTTCGCCGACATGCCCGAGGCGCTGCAGCGCCTGCGCCGTGGTCTGCTGCGCCAAGTCGGCGGGGACCGCGTGATGGCCCAGGTGCTGGCCAT
CGTGCCCACGGCCGGTCTGGATGCGGTGATCGTGGCGGTCGAGTTGGCGATGGAGAACGGACCGCCATCCGGGCGTGTCAGCGTGGAGCATGTCGTCAAC
GTGCTCGGCCGGCTCAACGCGCCGGCAACGCCGCCAAGCGCCGAGACGGCGTTGCAGGTCGCCACACCGCCGCTGGCCAACACGGCTCGCTACGACAGCC
TGCGTGGTCAGGAGGTGGGCCATGCGTGACGTCACCGTTGAGCTCAAGGCATTGCGCCTGCACGGCATGGCCAGTGCCTGGTGCGATCTGCAGGAGCAAG
GGCCGGCCTCGGGTCTGGAGGCCTCGCGCTGGCTGGTCGAGCATCTGTTGCAAGCCGAGTCGACGGACCGGGCGATGCGCTCGGTCCAGTACCAGATGAC
CTCGGCGCGCTTCCCCGTGCACCGGGATCTGGCGGGCTTCGACTTCGATGCCTCGCCAGTGGACCAGAAGCTGATCCAGCAGCTCGCGACGCTGGAGTTC
ACCGAGGCTGCGCACAACGCCGTGCTGGTCGGCGGACCGGGCACAGGCAAGACCCATCTGGCCACGGCCCTGGGGGTGTCGGGCATCGTGCGCCAAGGCA
AGCGCGTGCGGTTCTACTCAACGGTCGATCTGGTCAACGCGCTCGAGCAGGAGAAGGCCCAGGGCAAGGCCGGACGGATCGCCAGTGGTCTGCTGCGCAT
GGACCTGGTGATCCTGGATGAGTTGGGCTACCTGCCGTTCAGTCAAGCCGGCGGCGCGTTGCTGTTCCATCTGCTGAGCAAGCTGTACGAGCACACCAGC
GTGGTGATCACCACCAACCTGGACTTCGCCGAGTGGTCGACGGTGTTCGGCGACGCGAAGATGACCACCGCCTTGCTCGACCGCCTGACGCACCACTGCC
ACATCGTGGAGACGGGCAACGAGAGCCATCGCTTCCTGCACAGCAGCGCGACTGCCAAGAAGCGCATCAAGGCCAGGGAGCAGGCCCGCAAGGGCAGCAG
CAAGAGCGACTCAAACGACTCCACTGACTGACGCTGCTGACCCAGACAGGGCGCTGCGGGCTTCGCCCTGCGCGCCCTATGAGTTCGATCACAGAACCCA
AAAGGAGATCCAAGAACAAGCAACGCCATACACTTATCCACAGTCGACCATTGCTGCGTCGGCTTCCACCCCTGGCTCACGATTCAAGCGGCGCGGTGGC
TCAGTTCTACTTCGGCGCGGACA
TTCCAGGAGTGATCACCATGGACATGATTGGCAGGATCCGGCGGCTCCACGTGAGGGACAAGCTGTCGGAGCGCGAGATCGCGCGCATGACGGGGCTGTC
CCGCAACACGGTCTCCAAGTGGCTGCGCGCACCGATCAACGAGTCGCCGAAGTACCGGCGTGAACCGCGCCCGAACAAGCTCAGCGCGTTCGAGGCGACA
CTGAGGCAGGCATTGACGGCCGATGCAAGGCGGCCCAAGCACGAGCGCCGCACAGCCCGCGCGCTGCATGCTGAGATCAAGGCCGCGGGCTACGGCGGCG
GTTATTCGGCCGTCACCGACTTCGTTCGGGCCTGGCGCCAGGGCGAGGGGCAATCGGTCAACGTCACGGCCTACGTTCCCTTGACCTTCGAGCTCGGCGA
GGCCTTCCAGTTCGATTGGAGCGAGGAAGGCCTGGTCGTCGGTGGCATCTACTATCGGGTGCAGGTTGCGCACCTGAAGTTGTGCGCGAGCCGCGCCTTT
TGGCTGGTCGCCTACCCGAGCCAGGGTCACGAGATGCTGTTCGACGCCCACACCAGATCGTTCGCTGCGCTGGGCGGCGTGGCCCGTCGCGGAATCTACG
ACAACATGCGTACCGCCGTCGACAAGGTCCACAAGGGCAAGGGGCGCACTGTCAACGCGCGCTTCGCGGTGATGTGTGCCCACTACCTGTACGACCCCGA
CTTCTGCAACGTCGCTTCCGGCTGGGAGAAGGGGCGCGTGGAGAAGAACGTGCAGGATAGCCGCCGGCGCATCTGGATCGAGGCGGCCCGGCGCCGCTTC
GGCTCCTTCGTCGAACTCAACGCTTGGCTGGGCGAGCGCTGCCGGGCCCTGTGGAACGAGGTCCGGCATCCCGAGCACGGCCAGTTCAGTGTGGCCGAGA
TGCTCGAACACGAGCGCCCCCACCTGATGCCCATGCCCGAGCCCTTCGACGGCTACGTGGAGAAGCCCGCGCGGGTGTCGAGCACCTGCCTGGTGTCGGT
GGCGCGCAATCGCTACTCAGTGCCGTGCGAGTTGGCCGGGCAGATGGTCAGCACGCGGCTGTACCCGGGCAGCGTGGTGATCGTCGCCGACGATGCGGTC
GTCGCGCGCCACGAGCGGATGAGCGATTCGGGCGGCACCCGCTACGACTGGCAGCACTACATTCCGCTGGTGCAGCGCAAGCCCGGCGCGTTGAGGAACG
GCGCACCCTTCGCCGACATGCCCGAGGCGCTGCAGCGCCTGCGCCGTGGTCTGCTGCGCCAAGTCGGCGGGGACCGCGTGATGGCCCAGGTGCTGGCCAT
CGTGCCCACGGCCGGTCTGGATGCGGTGATCGTGGCGGTCGAGTTGGCGATGGAGAACGGACCGCCATCCGGGCGTGTCAGCGTGGAGCATGTCGTCAAC
GTGCTCGGCCGGCTCAACGCGCCGGCAACGCCGCCAAGCGCCGAGACGGCGTTGCAGGTCGCCACACCGCCGCTGGCCAACACGGCTCGCTACGACAGCC
TGCGTGGTCAGGAGGTGGGCCATGCGTGACGTCACCGTTGAGCTCAAGGCATTGCGCCTGCACGGCATGGCCAGTGCCTGGTGCGATCTGCAGGAGCAAG
GGCCGGCCTCGGGTCTGGAGGCCTCGCGCTGGCTGGTCGAGCATCTGTTGCAAGCCGAGTCGACGGACCGGGCGATGCGCTCGGTCCAGTACCAGATGAC
CTCGGCGCGCTTCCCCGTGCACCGGGATCTGGCGGGCTTCGACTTCGATGCCTCGCCAGTGGACCAGAAGCTGATCCAGCAGCTCGCGACGCTGGAGTTC
ACCGAGGCTGCGCACAACGCCGTGCTGGTCGGCGGACCGGGCACAGGCAAGACCCATCTGGCCACGGCCCTGGGGGTGTCGGGCATCGTGCGCCAAGGCA
AGCGCGTGCGGTTCTACTCAACGGTCGATCTGGTCAACGCGCTCGAGCAGGAGAAGGCCCAGGGCAAGGCCGGACGGATCGCCAGTGGTCTGCTGCGCAT
GGACCTGGTGATCCTGGATGAGTTGGGCTACCTGCCGTTCAGTCAAGCCGGCGGCGCGTTGCTGTTCCATCTGCTGAGCAAGCTGTACGAGCACACCAGC
GTGGTGATCACCACCAACCTGGACTTCGCCGAGTGGTCGACGGTGTTCGGCGACGCGAAGATGACCACCGCCTTGCTCGACCGCCTGACGCACCACTGCC
ACATCGTGGAGACGGGCAACGAGAGCCATCGCTTCCTGCACAGCAGCGCGACTGCCAAGAAGCGCATCAAGGCCAGGGAGCAGGCCCGCAAGGGCAGCAG
CAAGAGCGACTCAAACGACTCCACTGACTGACGCTGCTGACCCAGACAGGGCGCTGCGGGCTTCGCCCTGCGCGCCCTATGAGTTCGATCACAGAACCCA
AAAGGAGATCCAAGAACAAGCAACGCCATACACTTATCCACAGTCGACCATTGCTGCGTCGGCTTCCACCCCTGGCTCACGATTCAAGCGGCGCGGTGGC
TCAGTTCTACTTCGGCGCGGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1512 bp | 503 aa | 118 | 1629 | + | No |
Chemistry : DDE
ORF sequence :
MDMIGRIRRLHVRDKLSEREIARMTGLSRNTVSKWLRAPINESPKYRREPRPNKLSAFEATLRQALTADARRPKHERRTARALHAEIKAAGYGGGYSAVT
DFVRAWRQGEGQSVNVTAYVPLTFELGEAFQFDWSEEGLVVGGIYYRVQVAHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMRTA
VDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGRVEKNVQDSRRRIWIEAARRRFGSFVELNAWLGERCRALWNEVRHPEHGQFSVAEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYPGSVVIVADDAVVARHERMSDSGGTRYDWQHYIPLVQRKPGALRNGAPFAD
MPEALQRLRRGLLRQVGGDRVMAQVLAIVPTAGLDAVIVAVELAMENGPPSGRVSVEHVVNVLGRLNAPATPPSAETALQVATPPLANTARYDSLRGQEV
GHA
DFVRAWRQGEGQSVNVTAYVPLTFELGEAFQFDWSEEGLVVGGIYYRVQVAHLKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMRTA
VDKVHKGKGRTVNARFAVMCAHYLYDPDFCNVASGWEKGRVEKNVQDSRRRIWIEAARRRFGSFVELNAWLGERCRALWNEVRHPEHGQFSVAEMLEHER
PHLMPMPEPFDGYVEKPARVSSTCLVSVARNRYSVPCELAGQMVSTRLYPGSVVIVADDAVVARHERMSDSGGTRYDWQHYIPLVQRKPGALRNGAPFAD
MPEALQRLRRGLLRQVGGDRVMAQVLAIVPTAGLDAVIVAVELAMENGPPSGRVSVEHVVNVLGRLNAPATPPSAETALQVATPPLANTARYDSLRGQEV
GHA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
765 bp | 254 aa | 1667 | 2431 | + | No |
AG : IS21 helper
ORF sequence :
MASAWCDLQEQGPASGLEASRWLVEHLLQAESTDRAMRSVQYQMTSARFPVHRDLAGFDFDASPVDQKLIQQLATLEFTEAAHNAVLVGGPGTGKTHLAT
ALGVSGIVRQGKRVRFYSTVDLVNALEQEKAQGKAGRIASGLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNLDFAEWSTVFGDAKMT
TALLDRLTHHCHIVETGNESHRFLHSSATAKKRIKAREQARKGSSKSDSNDSTD
ALGVSGIVRQGKRVRFYSTVDLVNALEQEKAQGKAGRIASGLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVVITTNLDFAEWSTVFGDAKMT
TALLDRLTHHCHIVETGNESHRFLHSSATAKKRIKAREQARKGSSKSDSNDSTD
Blast result :
Comments
ISVapa2 is 89% (transposase) and 90% (IS21 helper) aa similar to ISJsp3.
References