ISJsp3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000269 | ND | Janthinobacterium sp | Janthinobacterium sp Marseille |
DNA section
IS Length : 2615 bp
Ends
IR Length : 23/25
IRL : TGTTGGCgccgaccgaaaactgagccacttatgaggggtgtgccgatcta
IRR : TGTCCGCgccgatccaaatctgagccaccgtgccgatccaatattgagcc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
cgtcgtaagt | ttctcggggt | 0 |
DNA sequence
TGTTGGCGCCGACCGAAAACTGAGCCACTTATGAGGGGTGTGCCGATCTAAAACTGAGCCAGGTGTTCAACCTACTCTGCTGCTTTTTGATGCAGCGGGG
TTCGAGGAGTGATCACCATGGACATGATCGGCAGAATCCGGCGGCTGCACAGCCGAGGCAAGAAGTCAGAGCGGGAGATCTCGCGGATGACGGGGCTATC
GCGCAACACGATAGCCAAGTGGCTCAAGGCGCCATTGGATGGCGAGCCCAAGTACCGGCGAATCGAGCAGCCGGGCAAGTTGACGGCCTTCCACGAGGTT
CTCAGGCAGGCGCTCAAGGCCGATGCCTATCGGGCCAAGCACGAGCGCCGCACGGCACGGGCGCTGTACAGCGAACTCAAGTCGGCAGGTTACGAAGGCG
GCTACAGCCGCGTGACGGACTTCATCCGCCAGTGGCGCCAAGGCGAGGGGCAAGCGGTAGCGACGCGAGCCTTCGTGCCCTTGTCGTTCGAGCTGGGCGA
GGCATTCCAGTTCGACTGGAGCGAAGAAGGCCTGGTGGTGGGCGGCATTTACTACCGGCTGCAGGTCTCGCACATGAAGCTGTGTGCCAGCCGTGCGTTC
TGGCTGGTGGCGTATCCCAGTCAGGGACACGAGATGCTGTTCGATGCGCACACGCGCAGCTTTGCGGCGCTGGGTGGGGTGGCCAGGCGCGGCATCTACG
ACAACATGAAGACGGCGGTGGACCAGGTCAAGAAGGGCAAGGGCCGAGTGGTCAACGCACGCTTTGCGGTGATGTGCGCGCACTACCTGTTCGACGCCGA
CTTCTGCAACGTGGCCAGTGGCTGGGAGAAGGGGGTCGTCGAGAAGAACGTGCAAGATAGCAGGCGGCGAATCTGGATTGATGCGGCCAAGCAGCGCTTT
GGCTCCTTTGCAGAACTCAACGCCTGGCTGGGCGAGCGCTGTCGCAGCCTGTGGGCGGAGGTTCGCCACCCAGAGCATTCGCAGTTCAGTGTGGCCGAGA
TGCTGGAGCATGAACGTGCCCATTTGATGTCAATGCCGCAGCCCTTTGACGGCTATGTGGAGCGCCCGGCGAGGGTGACCAGCACCTGCTTGGTCTCGGT
CGCACGCAACCGTTACTCGGTGCCTTGCGAGCTGGCCGGGCAGATGGTCAGCACCCGGCTGTACCCGACGCGGGTGGTCGTGGTGGCCAACGATGAGGTG
GTGGCGCAGCATGAGCGATTCAGTGACCGTGGACAGACCCGCTATGACTGGCAGCACTACATCCCGCTGGTGCAAAGAAAGCCCGGTGCGCTGCGCAATG
GCGCACCGTTTGCCGACCTCCCCCCGGCCTTGCAGCAGTTGCGCAGAGGGCTGCTACGCCAGGCCGGTGGCGACCGTGTCATGGCGCAGGTACTGGCCAT
TGTGAGCACAGCTGGCCTGGATGCGGTGCTGGTGGCAGTTGAATTGGCGCTGGAGAGCGCGCCACCGTCTGGCAAGGTCAGCGTCGAGCATGTGATCAAT
GTTCTGAGCAGGCTCAACCCTGCACCCACGCCTGAAGATGCACAGACCTGTTTGCAGGCGACAGTGGCCCCACTGGCCAACACGGCGCGCTACGACAGCT
TGCGCGGGCAAGGCGGCACGGAGGAGATCAACCATGCGTGATATCGCTGCAGAGCTCAAACAACTGCGCCTGCACGGCATGGCGGGCGCATGGTTGGACC
TGATCGAACAAGGGTCCAGTACGGGCTCAGAGGATGCACGGTGGTTGATTGAACACCTGCTGCAGGCCGAGGCCACAGACCGAGGCATGCGCTCGGTGAG
CCATCAGATGCATGCAGCCAAGTTCCCTGTGCATCGAGACCTGGCTGGGTTCGACTTCGCTGTGTCCCCCGTTGACAGCAAGCTGGTTCACACGCTGGCA
GAGACAGGCTTCACAGAAGTGGCGCACAACGTGGTGTTGGTGGGAGGGCCTGGCACCGGCAAGACCCACCTGGCCACAGCCATTGGCGTGTCCGGCATCA
CCAAGCATGGCAGGCGCGTGCGCTTTTACTCCACGGTGGATCTGGTCAACGCGCTGGAGCAAGAGAAGGCACAAGGCAAGGCCGGACGCATCGCGACGAG
CTTGTTGCGCCTGGACCTGGTGATCCTCGATGAGTTGGGCTACCTGCCGTTCAGCCAGGCAGGCGGTGCGCTGCTGTTCCACTTGCTCAGCCGGTTGTAC
GAGCACACCAGCGTGATGATCACGACGAATCTGGACTTCGCGGAATGGTCGCGTGTCTTTGGTGATGCCAAGATGACGACGGCGCTGCTGGACCGGCTCA
CACACCACTGCCACATCCTGGAGACGGGCAACGAGTCACACCGATTCCTGCACAGTTCCAGCACGGCCAAGAGGCGCATCAAGGCACGAGAGCAGTCTCG
GATGCAGGCTGCAGCAGAGGGCAAGGCCTGAAGCTCAAAGCGAAGGGGGAAGCCGCTGCGCGGCTTCCCCCTTGATGTTCAACCAAGCCGGCCGGAAAAC
TCAAAACCCAGGCCAGGCTCTACACTTATCCACAGCTGACCACCCTTTGGTCGGCTACCAGCCCTGGCTCAATATTGGATCGGCACGGTGGCTCAGATTT
GGATCGGCGCGGACA
TTCGAGGAGTGATCACCATGGACATGATCGGCAGAATCCGGCGGCTGCACAGCCGAGGCAAGAAGTCAGAGCGGGAGATCTCGCGGATGACGGGGCTATC
GCGCAACACGATAGCCAAGTGGCTCAAGGCGCCATTGGATGGCGAGCCCAAGTACCGGCGAATCGAGCAGCCGGGCAAGTTGACGGCCTTCCACGAGGTT
CTCAGGCAGGCGCTCAAGGCCGATGCCTATCGGGCCAAGCACGAGCGCCGCACGGCACGGGCGCTGTACAGCGAACTCAAGTCGGCAGGTTACGAAGGCG
GCTACAGCCGCGTGACGGACTTCATCCGCCAGTGGCGCCAAGGCGAGGGGCAAGCGGTAGCGACGCGAGCCTTCGTGCCCTTGTCGTTCGAGCTGGGCGA
GGCATTCCAGTTCGACTGGAGCGAAGAAGGCCTGGTGGTGGGCGGCATTTACTACCGGCTGCAGGTCTCGCACATGAAGCTGTGTGCCAGCCGTGCGTTC
TGGCTGGTGGCGTATCCCAGTCAGGGACACGAGATGCTGTTCGATGCGCACACGCGCAGCTTTGCGGCGCTGGGTGGGGTGGCCAGGCGCGGCATCTACG
ACAACATGAAGACGGCGGTGGACCAGGTCAAGAAGGGCAAGGGCCGAGTGGTCAACGCACGCTTTGCGGTGATGTGCGCGCACTACCTGTTCGACGCCGA
CTTCTGCAACGTGGCCAGTGGCTGGGAGAAGGGGGTCGTCGAGAAGAACGTGCAAGATAGCAGGCGGCGAATCTGGATTGATGCGGCCAAGCAGCGCTTT
GGCTCCTTTGCAGAACTCAACGCCTGGCTGGGCGAGCGCTGTCGCAGCCTGTGGGCGGAGGTTCGCCACCCAGAGCATTCGCAGTTCAGTGTGGCCGAGA
TGCTGGAGCATGAACGTGCCCATTTGATGTCAATGCCGCAGCCCTTTGACGGCTATGTGGAGCGCCCGGCGAGGGTGACCAGCACCTGCTTGGTCTCGGT
CGCACGCAACCGTTACTCGGTGCCTTGCGAGCTGGCCGGGCAGATGGTCAGCACCCGGCTGTACCCGACGCGGGTGGTCGTGGTGGCCAACGATGAGGTG
GTGGCGCAGCATGAGCGATTCAGTGACCGTGGACAGACCCGCTATGACTGGCAGCACTACATCCCGCTGGTGCAAAGAAAGCCCGGTGCGCTGCGCAATG
GCGCACCGTTTGCCGACCTCCCCCCGGCCTTGCAGCAGTTGCGCAGAGGGCTGCTACGCCAGGCCGGTGGCGACCGTGTCATGGCGCAGGTACTGGCCAT
TGTGAGCACAGCTGGCCTGGATGCGGTGCTGGTGGCAGTTGAATTGGCGCTGGAGAGCGCGCCACCGTCTGGCAAGGTCAGCGTCGAGCATGTGATCAAT
GTTCTGAGCAGGCTCAACCCTGCACCCACGCCTGAAGATGCACAGACCTGTTTGCAGGCGACAGTGGCCCCACTGGCCAACACGGCGCGCTACGACAGCT
TGCGCGGGCAAGGCGGCACGGAGGAGATCAACCATGCGTGATATCGCTGCAGAGCTCAAACAACTGCGCCTGCACGGCATGGCGGGCGCATGGTTGGACC
TGATCGAACAAGGGTCCAGTACGGGCTCAGAGGATGCACGGTGGTTGATTGAACACCTGCTGCAGGCCGAGGCCACAGACCGAGGCATGCGCTCGGTGAG
CCATCAGATGCATGCAGCCAAGTTCCCTGTGCATCGAGACCTGGCTGGGTTCGACTTCGCTGTGTCCCCCGTTGACAGCAAGCTGGTTCACACGCTGGCA
GAGACAGGCTTCACAGAAGTGGCGCACAACGTGGTGTTGGTGGGAGGGCCTGGCACCGGCAAGACCCACCTGGCCACAGCCATTGGCGTGTCCGGCATCA
CCAAGCATGGCAGGCGCGTGCGCTTTTACTCCACGGTGGATCTGGTCAACGCGCTGGAGCAAGAGAAGGCACAAGGCAAGGCCGGACGCATCGCGACGAG
CTTGTTGCGCCTGGACCTGGTGATCCTCGATGAGTTGGGCTACCTGCCGTTCAGCCAGGCAGGCGGTGCGCTGCTGTTCCACTTGCTCAGCCGGTTGTAC
GAGCACACCAGCGTGATGATCACGACGAATCTGGACTTCGCGGAATGGTCGCGTGTCTTTGGTGATGCCAAGATGACGACGGCGCTGCTGGACCGGCTCA
CACACCACTGCCACATCCTGGAGACGGGCAACGAGTCACACCGATTCCTGCACAGTTCCAGCACGGCCAAGAGGCGCATCAAGGCACGAGAGCAGTCTCG
GATGCAGGCTGCAGCAGAGGGCAAGGCCTGAAGCTCAAAGCGAAGGGGGAAGCCGCTGCGCGGCTTCCCCCTTGATGTTCAACCAAGCCGGCCGGAAAAC
TCAAAACCCAGGCCAGGCTCTACACTTATCCACAGCTGACCACCCTTTGGTCGGCTACCAGCCCTGGCTCAATATTGGATCGGCACGGTGGCTCAGATTT
GGATCGGCGCGGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1524 bp | 507 aa | 118 | 1641 | + | No |
Chemistry : DDE
ORF sequence :
MDMIGRIRRLHSRGKKSEREISRMTGLSRNTIAKWLKAPLDGEPKYRRIEQPGKLTAFHEVLRQALKADAYRAKHERRTARALYSELKSAGYEGGYSRVT
DFIRQWRQGEGQAVATRAFVPLSFELGEAFQFDWSEEGLVVGGIYYRLQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDQVKKGKGRVVNARFAVMCAHYLFDADFCNVASGWEKGVVEKNVQDSRRRIWIDAAKQRFGSFAELNAWLGERCRSLWAEVRHPEHSQFSVAEMLEHER
AHLMSMPQPFDGYVERPARVTSTCLVSVARNRYSVPCELAGQMVSTRLYPTRVVVVANDEVVAQHERFSDRGQTRYDWQHYIPLVQRKPGALRNGAPFAD
LPPALQQLRRGLLRQAGGDRVMAQVLAIVSTAGLDAVLVAVELALESAPPSGKVSVEHVINVLSRLNPAPTPEDAQTCLQATVAPLANTARYDSLRGQGG
TEEINHA
DFIRQWRQGEGQAVATRAFVPLSFELGEAFQFDWSEEGLVVGGIYYRLQVSHMKLCASRAFWLVAYPSQGHEMLFDAHTRSFAALGGVARRGIYDNMKTA
VDQVKKGKGRVVNARFAVMCAHYLFDADFCNVASGWEKGVVEKNVQDSRRRIWIDAAKQRFGSFAELNAWLGERCRSLWAEVRHPEHSQFSVAEMLEHER
AHLMSMPQPFDGYVERPARVTSTCLVSVARNRYSVPCELAGQMVSTRLYPTRVVVVANDEVVAQHERFSDRGQTRYDWQHYIPLVQRKPGALRNGAPFAD
LPPALQQLRRGLLRQAGGDRVMAQVLAIVSTAGLDAVLVAVELALESAPPSGKVSVEHVINVLSRLNPAPTPEDAQTCLQATVAPLANTARYDSLRGQGG
TEEINHA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
798 bp | 265 aa | 1634 | 2431 | + | No |
AG : IS21 helper
ORF sequence :
MRDIAAELKQLRLHGMAGAWLDLIEQGSSTGSEDARWLIEHLLQAEATDRGMRSVSHQMHAAKFPVHRDLAGFDFAVSPVDSKLVHTLAETGFTEVAHNV
VLVGGPGTGKTHLATAIGVSGITKHGRRVRFYSTVDLVNALEQEKAQGKAGRIATSLLRLDLVILDELGYLPFSQAGGALLFHLLSRLYEHTSVMITTNL
DFAEWSRVFGDAKMTTALLDRLTHHCHILETGNESHRFLHSSSTAKRRIKAREQSRMQAAAEGKA
VLVGGPGTGKTHLATAIGVSGITKHGRRVRFYSTVDLVNALEQEKAQGKAGRIATSLLRLDLVILDELGYLPFSQAGGALLFHLLSRLYEHTSVMITTNL
DFAEWSRVFGDAKMTTALLDRLTHHCHILETGNESHRFLHSSSTAKRRIKAREQSRMQAAAEGKA
Blast result :
Comments
ISJsp3 is 90% (transposase) aa similar to ISAisp6 and 92% (IS21 helper) aa similar to ISCARN16.
References