ISCosp2
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_LJVG01000078 | ND | Colwellia sp. | Colwellia sp. MT2012 |
DNA section
IS Length : 1054 bp
Ends
IR Length : 19/20
IRL : AAGGGGTATCCCTTTAGCTCCACAAGACGTAAAGTGTTCTTATGGAGCCA
IRR : AAGGGGTATCCCCTTAGCTCCATATATGAGGTTTTGTATTATTCTCAACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNN | AT | 0 |
DNA sequence
AAGGGGTATCCCTTTAGCTCCACAAGACGTAAAGTGTTCTTATGGAGCCAATCAAAAAAATGCCTGTCGCTGGCAAAGACTACCCTATAACTTGGAGCCA
ATTTCTTGATTGGTTTCATTCTGAAGAATCTTGCCGGACTTATTTGGTTGGTTTGAGGTGGCCTACTGGATTTATTTGCCCAAAGTGTGGTTTTTTGGGA
AATGTTACGCAATCAAGTCGAGGTAGATGGGTGTGTCCCGCCTGTAAACGCCAGTCCACAGTTACGGCGGGTACGATCTTTGACAAGACACGCACTGATA
TACGAGTCTGGTTTGCTGCAATTTGGTATATCACGAGCCAAAAAAATGGGGTGAGTGCGCTTGGATTACAACGAGTTTTGGGACTTGGAAGTTACGAAAC
TGCTTGGACGATGCTGCACAGATTACGACGAGCAATGGTACTTCCATCTCGTGAATTGCTGACAGGAGAAGTTGAAGTTGATGAAACTTACCTAGCTTTA
ACAGAGCGTGGTAATCATAAATCTGGCAAGAGTAGTAAGTGTAATACAACGAAGGCATTGGTTGTTATTGCTGTAGAAATACTTCAACCAAAAGGCTTCG
GTAGAATTCGTGTTCAACGTATTGAAAAAGCAGATTCAGCACACTTGATACCGTTTATCTGGGAGTCAATTGATGCAAGTGCGAATATTCACACTGACGG
CTCAACAGCTTATAACAAGCTCAAAGAGAAAGGATACGATCATCGGCGAACGGTTCATCTGGGTTCAGATATTCAGGCTCATGATTCCATGCCTGGCGTT
CATCGAGTTGCAGCTCTTCTTCAACGGTGGCTACTAGGGACTCATCATGGTGCTATACAGCCCAAACAACTCGATTATTACTTAGATGAGTTTGTCTTTC
GTTTTAATCGCCGAACTTCAAAATCACGAGGTTTGCTATTTTATAGGTTGCTTCAACAGGCTGTGGTGACTCGTCCAGTTACGTACAAAAAGATCACAGG
TAAGAGTTGAGAATAATACAAAACCTCATATATGGAGCTAAGGGGATACCCCTT
ATTTCTTGATTGGTTTCATTCTGAAGAATCTTGCCGGACTTATTTGGTTGGTTTGAGGTGGCCTACTGGATTTATTTGCCCAAAGTGTGGTTTTTTGGGA
AATGTTACGCAATCAAGTCGAGGTAGATGGGTGTGTCCCGCCTGTAAACGCCAGTCCACAGTTACGGCGGGTACGATCTTTGACAAGACACGCACTGATA
TACGAGTCTGGTTTGCTGCAATTTGGTATATCACGAGCCAAAAAAATGGGGTGAGTGCGCTTGGATTACAACGAGTTTTGGGACTTGGAAGTTACGAAAC
TGCTTGGACGATGCTGCACAGATTACGACGAGCAATGGTACTTCCATCTCGTGAATTGCTGACAGGAGAAGTTGAAGTTGATGAAACTTACCTAGCTTTA
ACAGAGCGTGGTAATCATAAATCTGGCAAGAGTAGTAAGTGTAATACAACGAAGGCATTGGTTGTTATTGCTGTAGAAATACTTCAACCAAAAGGCTTCG
GTAGAATTCGTGTTCAACGTATTGAAAAAGCAGATTCAGCACACTTGATACCGTTTATCTGGGAGTCAATTGATGCAAGTGCGAATATTCACACTGACGG
CTCAACAGCTTATAACAAGCTCAAAGAGAAAGGATACGATCATCGGCGAACGGTTCATCTGGGTTCAGATATTCAGGCTCATGATTCCATGCCTGGCGTT
CATCGAGTTGCAGCTCTTCTTCAACGGTGGCTACTAGGGACTCATCATGGTGCTATACAGCCCAAACAACTCGATTATTACTTAGATGAGTTTGTCTTTC
GTTTTAATCGCCGAACTTCAAAATCACGAGGTTTGCTATTTTATAGGTTGCTTCAACAGGCTGTGGTGACTCGTCCAGTTACGTACAAAAAGATCACAGG
TAAGAGTTGAGAATAATACAAAACCTCATATATGGAGCTAAGGGGATACCCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 42 | 1010 | + | No |
Chemistry : DDE
ORF sequence :
MEPIKKMPVAGKDYPITWSQFLDWFHSEESCRTYLVGLRWPTGFICPKCGFLGNVTQSSRGRWVCPACKRQSTVTAGTIFDKTRTDIRVWFAAIWYITSQ
KNGVSALGLQRVLGLGSYETAWTMLHRLRRAMVLPSRELLTGEVEVDETYLALTERGNHKSGKSSKCNTTKALVVIAVEILQPKGFGRIRVQRIEKADSA
HLIPFIWESIDASANIHTDGSTAYNKLKEKGYDHRRTVHLGSDIQAHDSMPGVHRVAALLQRWLLGTHHGAIQPKQLDYYLDEFVFRFNRRTSKSRGLLF
YRLLQQAVVTRPVTYKKITGKS
KNGVSALGLQRVLGLGSYETAWTMLHRLRRAMVLPSRELLTGEVEVDETYLALTERGNHKSGKSSKCNTTKALVVIAVEILQPKGFGRIRVQRIEKADSA
HLIPFIWESIDASANIHTDGSTAYNKLKEKGYDHRRTVHLGSDIQAHDSMPGVHRVAALLQRWLLGTHHGAIQPKQLDYYLDEFVFRFNRRTSKSRGLLF
YRLLQQAVVTRPVTYKKITGKS
Blast result :
Comments
ISCosp2 is 83% aa similar to ISMrsp3.
References