ISOan10
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP003740 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus |
DNA section
IS Length : 1167 bp
Ends
IR Length : 28/36
IRL : AAGGCTTATCCCCTTTGCTCCGGCGGCACCTGATGTAGTGTGAAGCGGCT
IRR : AAGGCTTATCCCTTTTAGTCCGGTTGCCCCACATGTTGACGCGGCGCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGATTCCAAT | CTAGGCCCA | ATTGAATTGC | 9 |
CATGAATAAT | ATTATCTCA | TATGAACGCC | 9 |
CCCCATCATT | ACCAGCAAT | ATTGTTGTCG | 9 |
ACAAAGCAAT | TGAGCGTTG/A | TTTGGGCGAG | 9 |
ATGGCTTATT | TTAAACGCA | AGTCTTGAAA | 9 |
TGTTTCTAAA | TGGTAACCA | ATTGTAAACG | 9 |
ACAGGTCCATA | ATTGAAGCT | TTTGCAGACGC | 9 |
CACCACTCAAT | CTCAAGCCG | CTTGCGTTGGT | 9 |
TGTCTTAAAGA | TTGGAAACA | TATGAAACAAA | 9 |
GCCTATTCAAA | CTGCTGGCA | TTTGCTGCGTG | 9 |
CCCGGATCAAT | TGCTTGGCG | CTTGAACTTCT | 9 |
TTTTCTGCAAT | TCCATTGCC | AATGGGAAATT | 9 |
GTTGAACCATT | ATGCGATCA | AATCTGCTGAA | 9 |
GCCCCTGCAT | CTACTGTGCA | TTTGCGCACA | 10 |
TCACCTACATA | CCCGTCAAG | AATGGTTTTTT | 9 |
ATACGTCTAAT | CCCACATAA | TATGTCATGGT | 9 |
CGCTACCCAAT | TTCCTGCTA | TATGTGTCATC | 9 |
GCGGCCCCATT | AGCAGCAAG | CATGCAAATGC | 9 |
AGGCGGTCTTG | ATGTGAGCA | ATTGAAGGGGA | 9 |
AAGGACACAAA | CTGGCGGGA | TTTTACTCCGC | 9 |
TTGCAATCAAATGCGTCTGA | CCCAAGACGCTTGTGCCAGG | 0 | |
CTCAACTCAAAGACCTAGTA | TAACCGACATTTGGGGTTCT | 0 | |
GCATAATCAAAGGTTTAATG | GGTATAATGATTGAAGACCA | 0 |
DNA sequence
AAGGCTTATCCCCTTTGCTCCGGCGGCACCTGATGTAGTGTGAAGCGGCTTGCCAATCTACAATGTTCTTGTATTGTTCTACCCATGCCAGCCAGATGGA
AAAACGACAAACCCATGTCCCGCCTGGCGTTCGACGCCAGGTTTTCTGATGAGGAAGCGTGTTCGCATTATCTGGCGGAACATCGTTGGCCTGAGGGCTT
TGTGTGTCCTTCCTGTGGCACCTGCAAGGGCTGGCCGTTAAAGCGAAATCGCGCGACTTGGGAATGTGCCGGTTGCGCACGGCAGACATCCGTGACGGCT
GGCACGGTGATGCACAGCAGCCATTTGCCGTTGCGAATTTGGTTTCTTGCCGCGCACATCATCACCAGCCATTCCAACGGCATGTCAGCGCTGCAACTTC
AGGCGCAACTTGGCCTTGGCAGCTACAAGACGGCGTGGCTCCTCTTGCAAAAGCTGCGGCGGTCGATGGTCAACCCTGACCGCAACCCCCTGAAAGACCT
TGTCGAGATCGATGAAACAGAGATTCCGTTCCGGTCCCGGCATGATCCCGAGGACCGGCCAAAGGGTGGGCGGAGCCCGGTCGGAAAGATGTTTGTCGTC
TGCGCCGTCGAGTTATCAAGAGACGGACATCCGCGCCGTATCAGGATGAAACACATTCCCGACGGCGCATCAAAGACGCTACACGGGTTCATTGGTCAGG
CTGTAGAGCCTGGCGCTCACGTCATCACGGATGGCTGGCTAGGTTACGAAAATCCCCCTGCAAACACGCATGAGGCGAAGGTCGTCAGCGGCAAGAAGGC
ACATGACATACTCCACTGGGTCCACCGCGTGTTCTCCAACCTAAAAACGTGGGCAAAAGGCGTCTTCCACGGCCTCAGAAAATGCCATCTGCAACGCTAT
CTCGACGAATTTGTGTTCCGCTGGAACCGACGGCGACACATGCGAAGCGCCTTCGACACGCTGCTGGGGATCGGTGTTGGTATTGGCCCAGCGACATATC
GTGATTTTGTTGAACAGCGCGCCTGAAGGCCCTTGTTCACGGCAAAAGCCACGCCCCATAAACCCACCAGATGTTACAAACTGATCCGATCCGCCTCTCA
AGCCACAAGGGCGAGGTTCTGCGCCGCGTCAACATGTGGGGCAACCGGACTAAAAGGGATAAGCCTT
AAAACGACAAACCCATGTCCCGCCTGGCGTTCGACGCCAGGTTTTCTGATGAGGAAGCGTGTTCGCATTATCTGGCGGAACATCGTTGGCCTGAGGGCTT
TGTGTGTCCTTCCTGTGGCACCTGCAAGGGCTGGCCGTTAAAGCGAAATCGCGCGACTTGGGAATGTGCCGGTTGCGCACGGCAGACATCCGTGACGGCT
GGCACGGTGATGCACAGCAGCCATTTGCCGTTGCGAATTTGGTTTCTTGCCGCGCACATCATCACCAGCCATTCCAACGGCATGTCAGCGCTGCAACTTC
AGGCGCAACTTGGCCTTGGCAGCTACAAGACGGCGTGGCTCCTCTTGCAAAAGCTGCGGCGGTCGATGGTCAACCCTGACCGCAACCCCCTGAAAGACCT
TGTCGAGATCGATGAAACAGAGATTCCGTTCCGGTCCCGGCATGATCCCGAGGACCGGCCAAAGGGTGGGCGGAGCCCGGTCGGAAAGATGTTTGTCGTC
TGCGCCGTCGAGTTATCAAGAGACGGACATCCGCGCCGTATCAGGATGAAACACATTCCCGACGGCGCATCAAAGACGCTACACGGGTTCATTGGTCAGG
CTGTAGAGCCTGGCGCTCACGTCATCACGGATGGCTGGCTAGGTTACGAAAATCCCCCTGCAAACACGCATGAGGCGAAGGTCGTCAGCGGCAAGAAGGC
ACATGACATACTCCACTGGGTCCACCGCGTGTTCTCCAACCTAAAAACGTGGGCAAAAGGCGTCTTCCACGGCCTCAGAAAATGCCATCTGCAACGCTAT
CTCGACGAATTTGTGTTCCGCTGGAACCGACGGCGACACATGCGAAGCGCCTTCGACACGCTGCTGGGGATCGGTGTTGGTATTGGCCCAGCGACATATC
GTGATTTTGTTGAACAGCGCGCCTGAAGGCCCTTGTTCACGGCAAAAGCCACGCCCCATAAACCCACCAGATGTTACAAACTGATCCGATCCGCCTCTCA
AGCCACAAGGGCGAGGTTCTGCGCCGCGTCAACATGTGGGGCAACCGGACTAAAAGGGATAAGCCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 85 | 1026 | + | No |
Chemistry : DDE
ORF sequence :
MPARWKNDKPMSRLAFDARFSDEEACSHYLAEHRWPEGFVCPSCGTCKGWPLKRNRATWECAGCARQTSVTAGTVMHSSHLPLRIWFLAAHIITSHSNGM
SALQLQAQLGLGSYKTAWLLLQKLRRSMVNPDRNPLKDLVEIDETEIPFRSRHDPEDRPKGGRSPVGKMFVVCAVELSRDGHPRRIRMKHIPDGASKTLH
GFIGQAVEPGAHVITDGWLGYENPPANTHEAKVVSGKKAHDILHWVHRVFSNLKTWAKGVFHGLRKCHLQRYLDEFVFRWNRRRHMRSAFDTLLGIGVGI
GPATYRDFVEQRA
SALQLQAQLGLGSYKTAWLLLQKLRRSMVNPDRNPLKDLVEIDETEIPFRSRHDPEDRPKGGRSPVGKMFVVCAVELSRDGHPRRIRMKHIPDGASKTLH
GFIGQAVEPGAHVITDGWLGYENPPANTHEAKVVSGKKAHDILHWVHRVFSNLKTWAKGVFHGLRKCHLQRYLDEFVFRWNRRRHMRSAFDTLLGIGVGI
GPATYRDFVEQRA
Blast result :
Comments
ISOan1 is 69% aa similar to ISApr2.
References