ISRhtr1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FO082820 | ND | Rhizobium sp. | Rhizobium sp. Rhizobium sp. NT-26 |
DNA section
IS Length : 2124 bp
Ends
IR Length : 33/39
IRL : ACGGCTTATCCCGCTAGCTCCGGTTTAACCATATCTTGAGGTCCCGGCGC
IRR : ACGGCTTATCCCTTTAGCTCCGGTCCTACCATATATTGATGATCGATAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGATGGGAT | GACGTTTT | GTCCGCTGGC | 8 |
DNA sequence
ACGGCTTATCCCGCTAGCTCCGGTTTAACCATATCTTGAGGTCCCGGCGCGGGAGTCTCGCCAAGGCACACTCACTGGTTTAATTGGGGCGAATGGCCCA
TCAGTCTGTCTTCAGATGGCGCTACGACCGCCCGCTTTCGCTGGAGCAGTTTCAACTGCGTTTTCCTGATGACTACGCCTGCGCGGCCTATCTGGCGAAG
AAGCGATGGCCCGACGGCTTCGTCTGCCCGCACTGTGGTTCGACGAAGGGTTGGAAGCTGCGGTCGAAGCCGTGGGTCTGGGAGTGCGGTGGAGAGCAGG
CCGACGAGGACGGCGAACTGACCCCGTGCCGCAAACAGACGTCCGTCATCGCTGGCACGATCATGCACAAGACGCACCTGCCGCTGCGGCAGTGGTTCCT
GGCAGCGCACCTGGTGACGACGCACTCGAACGGCATCTCAGCCCTTCAGCTCCAGGCCAAGCTGGGCATCGGCTCCTACAAGACCGCATGGCTTCTCCTG
CACAAGCTACGTCGCGCCATGGTCAATCCCGACCGAGAGAAGTTGGGCGGCTACGAAGAGACCGTCGAGATCGACGAGACGAGCATTCCCTTCCGGACAA
AGGACGAGCCCGTCGGCGGCGGACAGGGCCGCAGCCCCATCGGCAAGCTCAACATCATCGGGGCGGTGGAATGGCGCGACGAAGGCAGGTCTGGCCGCAT
CCGCCTTGAACCTATCCGCACCAACGGCAGGGAATCCCTGCATCCATTCGTGTTGCGCAACACGAATCCCCACACGACGATCTTCACCGACGGCAACCAG
GCCTATCAGGGTATTCCCGACCGCAATCACGCCTCGAAAGTCGTGGGGAAACTGCCCGCGCATCTTTGGTTCAAACGCATACACCGCGTCTTCTCGCTGA
TGAAGCGGTGGATGATGGGTGTATATCACGGCGTCCGCCGACGTCACCTCAACATCTACCTCCAGGAGTTCGTCTTCCGCTGGAACCGTCGACGGCAATA
CCGCGCCGCATTCGACAGCCTCGTCGCCATCGGCAACGAGGTCGGCCATGCCAGCCTCCGCGACATCGTCGGCAGGCCGCCGGTCCTCAAGACGCTCATG
GATCAAGTGCGTGATGGGATCGAGCTGGATCGCCGCCAGGCGTACCTGGAGGCTATCGCCAAGGGTGTACCCAGTGTCTTTGCGGAGAGACTGCTCGACC
CCGACTACGTTGCGCCAGAACCACGCGTCTATCGGCGAAATGTACCGCCGCGACCGATCTTAGCCAAATCACGCTCGGCTTTTGTATACGCTACTCACTG
ACAACGCATTCAAAGCCCAGGATTAGCGCCACCGCTATACGTATCTTCGTTGTCTTCATCATCATCGTTGTCATAGTCAGCAGCAAGCTCGGCAGGCGTA
TATGCGTCCTTCTGCCGTGCGTCTCTTATTGCCGCGATTTCAACCATGCCGTCGCGTGCGCGAATCGTGAGGACCAAAGGCGGCATGCTCACCTTGCGCG
TACCTTCAAGAACACCTTTCTCGGTCATTTGCGGGAAGGACGAAAGAAGGTCCTTCTGCCTCTCCAGACGCTCAATCAGGCTTCTGGCGGCTGCGGGGTT
CACCTCCGAAAGTTCTACAACCTTGTTGAGAAACCAGCGTTCCGCGCTCTTCGATAAACGGACAGGAGGCATCAACCGGCCCGCTGACTACGTCGATACT
CGGCTGCATCAACGATAGTTCGAGCCTTATCAAGCACATCTTCGAGATCAACACTTTCGCCGCGATCCAGCTCAGCGATGCCTTGGGCATCCCGAAGAAC
TTCGGCTCCTTCACCTGCCAAATATTGGCTGAGGGCTTTCTGCATCACCCAAGTCCGATCCCGATCAAGAAGGCCTGCGATTTCATCGAACTTGGCAACC
ACAGGAGATGGTAGCCGCAGGGAGACCTGCGTTTTTTCGTTGTTCAACATGATGGAGGCTCCGTATTTCACTGCATTACAGCGTAACCCAATAACCATCA
AAGTCAATTGCTATCGGCCTTAACGACCCCGACAGAATCGCATAATCCTATTTTGATCAGTAATTTACGAGAATTTTATCGATCATCAATATATGGTAGG
ACCGGAGCTAAAGGGATAAGCCGT
TCAGTCTGTCTTCAGATGGCGCTACGACCGCCCGCTTTCGCTGGAGCAGTTTCAACTGCGTTTTCCTGATGACTACGCCTGCGCGGCCTATCTGGCGAAG
AAGCGATGGCCCGACGGCTTCGTCTGCCCGCACTGTGGTTCGACGAAGGGTTGGAAGCTGCGGTCGAAGCCGTGGGTCTGGGAGTGCGGTGGAGAGCAGG
CCGACGAGGACGGCGAACTGACCCCGTGCCGCAAACAGACGTCCGTCATCGCTGGCACGATCATGCACAAGACGCACCTGCCGCTGCGGCAGTGGTTCCT
GGCAGCGCACCTGGTGACGACGCACTCGAACGGCATCTCAGCCCTTCAGCTCCAGGCCAAGCTGGGCATCGGCTCCTACAAGACCGCATGGCTTCTCCTG
CACAAGCTACGTCGCGCCATGGTCAATCCCGACCGAGAGAAGTTGGGCGGCTACGAAGAGACCGTCGAGATCGACGAGACGAGCATTCCCTTCCGGACAA
AGGACGAGCCCGTCGGCGGCGGACAGGGCCGCAGCCCCATCGGCAAGCTCAACATCATCGGGGCGGTGGAATGGCGCGACGAAGGCAGGTCTGGCCGCAT
CCGCCTTGAACCTATCCGCACCAACGGCAGGGAATCCCTGCATCCATTCGTGTTGCGCAACACGAATCCCCACACGACGATCTTCACCGACGGCAACCAG
GCCTATCAGGGTATTCCCGACCGCAATCACGCCTCGAAAGTCGTGGGGAAACTGCCCGCGCATCTTTGGTTCAAACGCATACACCGCGTCTTCTCGCTGA
TGAAGCGGTGGATGATGGGTGTATATCACGGCGTCCGCCGACGTCACCTCAACATCTACCTCCAGGAGTTCGTCTTCCGCTGGAACCGTCGACGGCAATA
CCGCGCCGCATTCGACAGCCTCGTCGCCATCGGCAACGAGGTCGGCCATGCCAGCCTCCGCGACATCGTCGGCAGGCCGCCGGTCCTCAAGACGCTCATG
GATCAAGTGCGTGATGGGATCGAGCTGGATCGCCGCCAGGCGTACCTGGAGGCTATCGCCAAGGGTGTACCCAGTGTCTTTGCGGAGAGACTGCTCGACC
CCGACTACGTTGCGCCAGAACCACGCGTCTATCGGCGAAATGTACCGCCGCGACCGATCTTAGCCAAATCACGCTCGGCTTTTGTATACGCTACTCACTG
ACAACGCATTCAAAGCCCAGGATTAGCGCCACCGCTATACGTATCTTCGTTGTCTTCATCATCATCGTTGTCATAGTCAGCAGCAAGCTCGGCAGGCGTA
TATGCGTCCTTCTGCCGTGCGTCTCTTATTGCCGCGATTTCAACCATGCCGTCGCGTGCGCGAATCGTGAGGACCAAAGGCGGCATGCTCACCTTGCGCG
TACCTTCAAGAACACCTTTCTCGGTCATTTGCGGGAAGGACGAAAGAAGGTCCTTCTGCCTCTCCAGACGCTCAATCAGGCTTCTGGCGGCTGCGGGGTT
CACCTCCGAAAGTTCTACAACCTTGTTGAGAAACCAGCGTTCCGCGCTCTTCGATAAACGGACAGGAGGCATCAACCGGCCCGCTGACTACGTCGATACT
CGGCTGCATCAACGATAGTTCGAGCCTTATCAAGCACATCTTCGAGATCAACACTTTCGCCGCGATCCAGCTCAGCGATGCCTTGGGCATCCCGAAGAAC
TTCGGCTCCTTCACCTGCCAAATATTGGCTGAGGGCTTTCTGCATCACCCAAGTCCGATCCCGATCAAGAAGGCCTGCGATTTCATCGAACTTGGCAACC
ACAGGAGATGGTAGCCGCAGGGAGACCTGCGTTTTTTCGTTGTTCAACATGATGGAGGCTCCGTATTTCACTGCATTACAGCGTAACCCAATAACCATCA
AAGTCAATTGCTATCGGCCTTAACGACCCCGACAGAATCGCATAATCCTATTTTGATCAGTAATTTACGAGAATTTTATCGATCATCAATATATGGTAGG
ACCGGAGCTAAAGGGATAAGCCGT
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1209 bp | 402 aa | 93 | 1301 | + | No |
Chemistry : DDE
ORF sequence :
MAHQSVFRWRYDRPLSLEQFQLRFPDDYACAAYLAKKRWPDGFVCPHCGSTKGWKLRSKPWVWECGGEQADEDGELTPCRKQTSVIAGTIMHKTHLPLRQ
WFLAAHLVTTHSNGISALQLQAKLGIGSYKTAWLLLHKLRRAMVNPDREKLGGYEETVEIDETSIPFRTKDEPVGGGQGRSPIGKLNIIGAVEWRDEGRS
GRIRLEPIRTNGRESLHPFVLRNTNPHTTIFTDGNQAYQGIPDRNHASKVVGKLPAHLWFKRIHRVFSLMKRWMMGVYHGVRRRHLNIYLQEFVFRWNRR
RQYRAAFDSLVAIGNEVGHASLRDIVGRPPVLKTLMDQVRDGIELDRRQAYLEAIAKGVPSVFAERLLDPDYVAPEPRVYRRNVPPRPILAKSRSAFVYA
TH
WFLAAHLVTTHSNGISALQLQAKLGIGSYKTAWLLLHKLRRAMVNPDREKLGGYEETVEIDETSIPFRTKDEPVGGGQGRSPIGKLNIIGAVEWRDEGRS
GRIRLEPIRTNGRESLHPFVLRNTNPHTTIFTDGNQAYQGIPDRNHASKVVGKLPAHLWFKRIHRVFSLMKRWMMGVYHGVRRRHLNIYLQEFVFRWNRR
RQYRAAFDSLVAIGNEVGHASLRDIVGRPPVLKTLMDQVRDGIELDRRQAYLEAIAKGVPSVFAERLLDPDYVAPEPRVYRRNVPPRPILAKSRSAFVYA
TH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
363 bp | 120 aa | 1672 | 1310 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MPPVRLSKSAERWFLNKVVELSEVNPAAARSLIERLERQKDLLSSFPQMTEKGVLEGTRKVSMPPLVLTIRARDGMVEIAAIRDARQKDAYTPAELAADY
DNDDDEDNEDTYSGGANPGL
DNDDDEDNEDTYSGGANPGL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
132 bp | 43 aa | 1783 | 1914 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGIPKNFGSFTCQILAEGFLHHPSPIPIKKACDFIELGNHRRW
Blast result :
Comments
ISRhtr1 is 66% (ORF1 : the transposase) aa similar to ISApr2.
References