ISMko1

  • Family IS1595
  • Group IS1595
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LUUJ01000014 ND Methylomonas koyamae
Methylomonas koyamae R-45378
DNA section
IS Length : 1045 bp

Ends


IR Length : 24/26

IRL : cttgattagcaatcattttccgctaatccccaaaaagcttggcaaacagg
IRR : cctgaTTAGCAATGATTTTCCGCTAACCGCAGCCAAGCTTCTGAGCGAGG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

CTTGATTAGCAATCATTTTCCGCTAATCCCCAAAAAGCTTGGCAAACAGGCGTACACTCAACAGAAAAGTTACCTGGGGGTGTGTCATGTCGATGAATCG
TGTGCAATTCCAACCGGGGCTGTCGATGCCTGAATTTATGCAGCAGTTTGGCACCGAGGCCCAATGCGAAACGGCGCTGATTCAAGCGCGTTGGCCACAA
GGCTTTCGCTGTCCGAAGTGCGATCACGATGAACATTGCGTCTTGGCTCGTAAAGGCCGCAAAACCTTTCAATGCAACGCGTGCCATCACCAGACCTCGA
TTATTGCGGGAACCGTTTTTCAGGGCAGTAACTTGCCGTTGACGATTTGGTTTCTGGGTATCCATTTGATCAGCCAAGCCAAAACCGGGTTATCGGCCCT
GGCACTGAAACGTCAGCTCGGCATCAGCTATCCCAGCGCCTGGCTGATGCACCACAAATTGATGCAAGCCATGGCCGAACGCGAAGCCGGCTACTGTTTA
TCGGGTTCAGTGCAAATCGATGATGCTTATTTGGGTGGGGAACATAGCGGCGGCAAGGTTGGCCGTGGATCAGAAAACAAAATCCCTTTCGTTGCGGCTG
TTTCTCTGGATGGTGCGGGCCATCCCAATCGCGTCAAGCTGACACCGGTCAGCGGATTTACCACCGAAGCGATAGCTGCCTGGGCGCAAAGTCATCTTGA
AGCCGATTGTCGTGTGACGTCCGATGGTCTGGCTTGTTTTGCCGGCGTCACGGCCGCCGGTTGTCAGCACAATCCCGTTGTCGCCGGTGGTCGTAAACCC
AATGAATTGCCTGAATTTCGCTGGGTCAACACGGTACTGGGCAATGTCAAAACCAGCCTGAGCGGCGTGTATCATGCCTTTGACTTCAGCAAATACGCTT
ACCGTTATCTCGCGGCGATCGCCTATCGGTTTAATCGCCGATTCCACCTCAGTACCTTACCTCAGCGTTTATTGGTAGCTGCTGTTACTATTGGACCTCG
CTCAGAAGCTTGGCTGCGGTTAGCGGAAAATCATTGCTAATCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
954 bp317 aa871040+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSMNRVQFQPGLSMPEFMQQFGTEAQCETALIQARWPQGFRCPKCDHDEHCVLARKGRKTFQCNACHHQTSIIAGTVFQGSNLPLTIWFLGIHLISQAKT
GLSALALKRQLGISYPSAWLMHHKLMQAMAEREAGYCLSGSVQIDDAYLGGEHSGGKVGRGSENKIPFVAAVSLDGAGHPNRVKLTPVSGFTTEAIAAWA
QSHLEADCRVTSDGLACFAGVTAAGCQHNPVVAGGRKPNELPEFRWVNTVLGNVKTSLSGVYHAFDFSKYAYRYLAAIAYRFNRRFHLSTLPQRLLVAAV
TIGPRSEAWLRLAENHC

 

Blast result :
Comments
ISMko1 is 78% aa similar to ISTni3.
References