ISPeat1
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP009125 | ND | Pectobacterium atrosepticum | Pectobacterium atrosepticum 21A Pectobacterium atrosepticum JG10-08 |
DNA section
IS Length : 1152 bp
Ends
IR Length : 15/17
IRL : AATAGCTGTTCCAAATAGTAGATCACCAGAAGGGAACTCAGTCCGATTTA
IRR : AATAGCTGATCCTAATATCGCTACACTTTTGCCTGACCGTGCTTCCTGCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTATCAC | TA | GCTTGATTAT | 2 |
TGATGCCCTC | TA | GTACCTGCTT | 2 |
CAAGCGTTCC | TA | GCTAGCAATA | 2 |
CGGGAAGCGC | Ta | GGTGTTGCTG | 2 |
TGATGCCCTC | TA | GTACCTGCTT | 2 |
CAAGCGTTCC | Ta | GCTAGCAATA | 2 |
DNA sequence
AATAGCTGTTCCAAATAGTAGATCACCAGAAGGGAACTCAGTCCGATTTAAGCGATCTGATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGTC
ATGCCGATCATAGCACCGATACCCGACGCCGAAAGGTGTCTGATGCAAAAAACCATCCATAAAACATGTGATAAAAACTATGCCCGCAGACTCACCGCGA
TGTTGATGCTTCATCGTGGGGACAAGATAAGTGACGTTGCCAAAACGCTTTGCTGCGCACGTTCATCGCTGGGGCGCTGGATTAATTGGTTCACACTTTA
CGGGCTGGAAGGCCTGAAATCATTACCCTCAGGTCGTGGCCGACGCTGGCCGTTTGAGCGCATTTGTGTGCTGTTGCGTCAACTGATTAAGCATTCGCCG
GAAGATTTTGGTTATCAGCGTTCTCGCTGGAGTACTGAACTGTTAGCAATAAAAATCAACGAGATAACCGGGTGCCGTTTGCATGCTTCAACCGTTCGCC
GCTGGCTTCCCTCTGCTGGACTTGTCTGGCGAAGAGCGGCCCCCACGCTGCGCATTCGCGACCCGTATAAAGAAGAGAAAATGGCCGCTATCGCAGAGGC
GCTAAGCGAGTGTAGCGTCGAACATCCCGTGTTTTACGAGGATGAGGTCGATATCCATCTCAACCCCAAAATAGGTGCTGACTGGCAGCTACGTGGTCAA
CAAAAGCGAGTTGTTACGCCAGGGAAAAACGAAAAATATTATCTGGCTGGCGCGTTGCACAGCGGCACAGGAAAAGTCAGTTACGTCGGCAGCAGCAGTA
AAAACTCGGGGTTATTTATCAGCTTGTTAAAACATCTAAAAAGCACGTACCGGCGAGCAAAAACGATCACGCTGATCGTTGATAACTACATCATCCATAA
AAGTCGTGAAACGCTTCGTTGGCTGAAGAATAACCCAAAATTTATTGTTATTTATCAACCAATTTACTCACCGTGGGTGAACCACGTAGAACGGTTATGG
CAGGCATTACACGACACAATAACTAGAAATCATAGCTGTCGTTCGATGTGGCAATTACTGAACAAAGTACGCTATTTTATGAAAACGGTAAGCCCATTTC
CTGGCAGGAAGCACGGTCAGGCAAAAGTGTAGCGATATTAGGATCAGCTATT
ATGCCGATCATAGCACCGATACCCGACGCCGAAAGGTGTCTGATGCAAAAAACCATCCATAAAACATGTGATAAAAACTATGCCCGCAGACTCACCGCGA
TGTTGATGCTTCATCGTGGGGACAAGATAAGTGACGTTGCCAAAACGCTTTGCTGCGCACGTTCATCGCTGGGGCGCTGGATTAATTGGTTCACACTTTA
CGGGCTGGAAGGCCTGAAATCATTACCCTCAGGTCGTGGCCGACGCTGGCCGTTTGAGCGCATTTGTGTGCTGTTGCGTCAACTGATTAAGCATTCGCCG
GAAGATTTTGGTTATCAGCGTTCTCGCTGGAGTACTGAACTGTTAGCAATAAAAATCAACGAGATAACCGGGTGCCGTTTGCATGCTTCAACCGTTCGCC
GCTGGCTTCCCTCTGCTGGACTTGTCTGGCGAAGAGCGGCCCCCACGCTGCGCATTCGCGACCCGTATAAAGAAGAGAAAATGGCCGCTATCGCAGAGGC
GCTAAGCGAGTGTAGCGTCGAACATCCCGTGTTTTACGAGGATGAGGTCGATATCCATCTCAACCCCAAAATAGGTGCTGACTGGCAGCTACGTGGTCAA
CAAAAGCGAGTTGTTACGCCAGGGAAAAACGAAAAATATTATCTGGCTGGCGCGTTGCACAGCGGCACAGGAAAAGTCAGTTACGTCGGCAGCAGCAGTA
AAAACTCGGGGTTATTTATCAGCTTGTTAAAACATCTAAAAAGCACGTACCGGCGAGCAAAAACGATCACGCTGATCGTTGATAACTACATCATCCATAA
AAGTCGTGAAACGCTTCGTTGGCTGAAGAATAACCCAAAATTTATTGTTATTTATCAACCAATTTACTCACCGTGGGTGAACCACGTAGAACGGTTATGG
CAGGCATTACACGACACAATAACTAGAAATCATAGCTGTCGTTCGATGTGGCAATTACTGAACAAAGTACGCTATTTTATGAAAACGGTAAGCCCATTTC
CTGGCAGGAAGCACGGTCAGGCAAAAGTGTAGCGATATTAGGATCAGCTATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 101 | 1132 | + | No |
Chemistry : DDE
ORF sequence :
MPIIAPIPDAERCLMQKTIHKTCDKNYARRLTAMLMLHRGDKISDVAKTLCCARSSLGRWINWFTLYGLEGLKSLPSGRGRRWPFERICVLLRQLIKHSP
EDFGYQRSRWSTELLAIKINEITGCRLHASTVRRWLPSAGLVWRRAAPTLRIRDPYKEEKMAAIAEALSECSVEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGKNEKYYLAGALHSGTGKVSYVGSSSKNSGLFISLLKHLKSTYRRAKTITLIVDNYIIHKSRETLRWLKNNPKFIVIYQPIYSPWVNHVERLW
QALHDTITRNHSCRSMWQLLNKVRYFMKTVSPFPGRKHGQAKV
EDFGYQRSRWSTELLAIKINEITGCRLHASTVRRWLPSAGLVWRRAAPTLRIRDPYKEEKMAAIAEALSECSVEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGKNEKYYLAGALHSGTGKVSYVGSSSKNSGLFISLLKHLKSTYRRAKTITLIVDNYIIHKSRETLRWLKNNPKFIVIYQPIYSPWVNHVERLW
QALHDTITRNHSCRSMWQLLNKVRYFMKTVSPFPGRKHGQAKV
Blast result :
Comments
ISPeat1 is 92% aa similar to ISEc33.
There is an empty site in Pectobacterium atrosepticum strain JG10-08 (position 479820).
There is an empty site in Pectobacterium atrosepticum strain JG10-08 (position 479820).
References
1] Nikolaichik,Y., Gorshkov,V., Gogolev,Y., Valentovich,L. and Evtushenkov,A. (2014) Genome Announc 2 (5)
2] Nikolaichik,Y. and Damienikan,A.U. (2016) PeerJ 4, E2056.
2] Nikolaichik,Y. and Damienikan,A.U. (2016) PeerJ 4, E2056.