ISPeat1

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP009125 ND Pectobacterium atrosepticum
Pectobacterium atrosepticum 21A
Pectobacterium atrosepticum JG10-08
DNA section
IS Length : 1152 bp

Ends


IR Length : 15/17

IRL : AATAGCTGTTCCAAATAGTAGATCACCAGAAGGGAACTCAGTCCGATTTA
IRR : AATAGCTGATCCTAATATCGCTACACTTTTGCCTGACCGTGCTTCCTGCC

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTATCACTAGCTTGATTAT2
TGATGCCCTCTAGTACCTGCTT2
CAAGCGTTCCTAGCTAGCAATA2
CGGGAAGCGCTaGGTGTTGCTG2
TGATGCCCTCTAGTACCTGCTT2
CAAGCGTTCCTaGCTAGCAATA2

DNA sequence

AATAGCTGTTCCAAATAGTAGATCACCAGAAGGGAACTCAGTCCGATTTAAGCGATCTGATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGTC
ATGCCGATCATAGCACCGATACCCGACGCCGAAAGGTGTCTGATGCAAAAAACCATCCATAAAACATGTGATAAAAACTATGCCCGCAGACTCACCGCGA
TGTTGATGCTTCATCGTGGGGACAAGATAAGTGACGTTGCCAAAACGCTTTGCTGCGCACGTTCATCGCTGGGGCGCTGGATTAATTGGTTCACACTTTA
CGGGCTGGAAGGCCTGAAATCATTACCCTCAGGTCGTGGCCGACGCTGGCCGTTTGAGCGCATTTGTGTGCTGTTGCGTCAACTGATTAAGCATTCGCCG
GAAGATTTTGGTTATCAGCGTTCTCGCTGGAGTACTGAACTGTTAGCAATAAAAATCAACGAGATAACCGGGTGCCGTTTGCATGCTTCAACCGTTCGCC
GCTGGCTTCCCTCTGCTGGACTTGTCTGGCGAAGAGCGGCCCCCACGCTGCGCATTCGCGACCCGTATAAAGAAGAGAAAATGGCCGCTATCGCAGAGGC
GCTAAGCGAGTGTAGCGTCGAACATCCCGTGTTTTACGAGGATGAGGTCGATATCCATCTCAACCCCAAAATAGGTGCTGACTGGCAGCTACGTGGTCAA
CAAAAGCGAGTTGTTACGCCAGGGAAAAACGAAAAATATTATCTGGCTGGCGCGTTGCACAGCGGCACAGGAAAAGTCAGTTACGTCGGCAGCAGCAGTA
AAAACTCGGGGTTATTTATCAGCTTGTTAAAACATCTAAAAAGCACGTACCGGCGAGCAAAAACGATCACGCTGATCGTTGATAACTACATCATCCATAA
AAGTCGTGAAACGCTTCGTTGGCTGAAGAATAACCCAAAATTTATTGTTATTTATCAACCAATTTACTCACCGTGGGTGAACCACGTAGAACGGTTATGG
CAGGCATTACACGACACAATAACTAGAAATCATAGCTGTCGTTCGATGTGGCAATTACTGAACAAAGTACGCTATTTTATGAAAACGGTAAGCCCATTTC
CTGGCAGGAAGCACGGTCAGGCAAAAGTGTAGCGATATTAGGATCAGCTATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa1011132+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIIAPIPDAERCLMQKTIHKTCDKNYARRLTAMLMLHRGDKISDVAKTLCCARSSLGRWINWFTLYGLEGLKSLPSGRGRRWPFERICVLLRQLIKHSP
EDFGYQRSRWSTELLAIKINEITGCRLHASTVRRWLPSAGLVWRRAAPTLRIRDPYKEEKMAAIAEALSECSVEHPVFYEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGKNEKYYLAGALHSGTGKVSYVGSSSKNSGLFISLLKHLKSTYRRAKTITLIVDNYIIHKSRETLRWLKNNPKFIVIYQPIYSPWVNHVERLW
QALHDTITRNHSCRSMWQLLNKVRYFMKTVSPFPGRKHGQAKV

 

Blast result :
Comments
ISPeat1 is 92% aa similar to ISEc33.
There is an empty site in Pectobacterium atrosepticum strain JG10-08 (position 479820).
References
1] Nikolaichik,Y., Gorshkov,V., Gogolev,Y., Valentovich,L. and Evtushenkov,A. (2014) Genome Announc 2 (5)
2] Nikolaichik,Y. and Damienikan,A.U. (2016) PeerJ 4, E2056.