ISEc68
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Escherichia coli | Escherichia coli Escherichia coli MRSN346595 |
DNA section
IS Length : 1197 bp
Ends
IR Length : 15/17
IRL : GGAAGGTGCGAATAAGTCCGAGATGTGAGATCATCGTGTTGTAACCTGAA
IRR : GGAAGTTGCGATTAAGTGGTCCGCAGCTCCCGATATGACGCCCCAAACCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGctgttgg | ttaa | cacgattcga | 4 |
GCAGCATCCC | TTAA | CGCCTTACCG | 4 |
DNA sequence
GGAAGGTGCGAATAAGTCCGAGATGTGAGATCATCGTGTTGTAACCTGAACCCAGAATGAGTAACCGGATGAGCCAGCAACTGACTTTTGCCGACAGTGA
GTTTTCCAGTAAACGCCGCCAGACCCGCAAAGAAGTTTTCCTTGGCAGAATGGATGACTTGCTTCCCTGGGACAAATTACTTGGCGTTATCGAGCCTGTG
TATCCCAAGGCCGGTAATGGTCGCAGGCCCTATCCGCTGGAAACCATGCTGCGTATTCACTGCATGCAGCAATGGTACAACCTGAGCGATGAGGCCATGG
AAGATGCCCTCTATGAAATCGCCTCCATGCGCCAATTTGCTCGCCTGTCACTGGATAAAGCCATTCCAGACCGCACTACCATCATGAATTTCCGGCATTT
GCTGGAGCAGCATGAACTGGCCCGCAAAATCTTCAGTACCGTTAATCACTGGCTAGCAGAGTGTGGCGTTCTAATGACCCAGGGCACCTTGGTGGATGCC
ACCATCATTCAAGCCCCCAGCTCTACCAAAAACAAACACAACAGCCGTGATGAAGACATGCACCAGACCAAGAAAGGTAACCAGTGGTACTTCGGCATGA
AAGCGCACATTGGCGTGGACGCCAAAAGTGGCCTGACCCACAGTCTGGTGACCACGGCGGCTAACGAGCACGACCTCAATCAGGTTGGCAAGTTACTGCA
TGGCGATGAAGAATTTATCTCAGCCGATGCTGGTTATCAGGGGGCCGAAAAGCGCGATGAGCTCAGCGATGTCAGCGCAGACTGGCTTATCGCCAAGCGT
CCCGGCAAAGTGAATGCATTGAAGCAACACCCGCGCAAGAACAAGCTGGCCATCCGTTACGAATACCTGAAAGCGAGTATCCGAGCGAAGGTTGAGCATC
CATTTCGGATAGTAAAATGTCAGTTTGGTTTCGTCAAAGCCAGGTACAAGGGGCTGGCTAAAAATGACAGTCAACTGGCGATGTTATTCACCCTGGCGAA
CCTGGTTCGAGTTGACCAATTGATACGGGCACAGGCGAGATCTACCTGAAATGAGGAAATTGGCCTGAAACAGGGCCAAAATCAGCCACGAAGAGACGAT
TTTGGGCTGAAAATTGGAAAATTGAGCCACAGGACGTCGATAAAGGACGGTTTGGGGCGTCATATCGGGAGCTGCGGACCACTTAATCGCAACTTCC
GTTTTCCAGTAAACGCCGCCAGACCCGCAAAGAAGTTTTCCTTGGCAGAATGGATGACTTGCTTCCCTGGGACAAATTACTTGGCGTTATCGAGCCTGTG
TATCCCAAGGCCGGTAATGGTCGCAGGCCCTATCCGCTGGAAACCATGCTGCGTATTCACTGCATGCAGCAATGGTACAACCTGAGCGATGAGGCCATGG
AAGATGCCCTCTATGAAATCGCCTCCATGCGCCAATTTGCTCGCCTGTCACTGGATAAAGCCATTCCAGACCGCACTACCATCATGAATTTCCGGCATTT
GCTGGAGCAGCATGAACTGGCCCGCAAAATCTTCAGTACCGTTAATCACTGGCTAGCAGAGTGTGGCGTTCTAATGACCCAGGGCACCTTGGTGGATGCC
ACCATCATTCAAGCCCCCAGCTCTACCAAAAACAAACACAACAGCCGTGATGAAGACATGCACCAGACCAAGAAAGGTAACCAGTGGTACTTCGGCATGA
AAGCGCACATTGGCGTGGACGCCAAAAGTGGCCTGACCCACAGTCTGGTGACCACGGCGGCTAACGAGCACGACCTCAATCAGGTTGGCAAGTTACTGCA
TGGCGATGAAGAATTTATCTCAGCCGATGCTGGTTATCAGGGGGCCGAAAAGCGCGATGAGCTCAGCGATGTCAGCGCAGACTGGCTTATCGCCAAGCGT
CCCGGCAAAGTGAATGCATTGAAGCAACACCCGCGCAAGAACAAGCTGGCCATCCGTTACGAATACCTGAAAGCGAGTATCCGAGCGAAGGTTGAGCATC
CATTTCGGATAGTAAAATGTCAGTTTGGTTTCGTCAAAGCCAGGTACAAGGGGCTGGCTAAAAATGACAGTCAACTGGCGATGTTATTCACCCTGGCGAA
CCTGGTTCGAGTTGACCAATTGATACGGGCACAGGCGAGATCTACCTGAAATGAGGAAATTGGCCTGAAACAGGGCCAAAATCAGCCACGAAGAGACGAT
TTTGGGCTGAAAATTGGAAAATTGAGCCACAGGACGTCGATAAAGGACGGTTTGGGGCGTCATATCGGGAGCTGCGGACCACTTAATCGCAACTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 69 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MSQQLTFADSEFSSKRRQTRKEVFLGRMDDLLPWDKLLGVIEPVYPKAGNGRRPYPLETMLRIHCMQQWYNLSDEAMEDALYEIASMRQFARLSLDKAIP
DRTTIMNFRHLLEQHELARKIFSTVNHWLAECGVLMTQGTLVDATIIQAPSSTKNKHNSRDEDMHQTKKGNQWYFGMKAHIGVDAKSGLTHSLVTTAANE
HDLNQVGKLLHGDEEFISADAGYQGAEKRDELSDVSADWLIAKRPGKVNALKQHPRKNKLAIRYEYLKASIRAKVEHPFRIVKCQFGFVKARYKGLAKND
SQLAMLFTLANLVRVDQLIRAQARST
DRTTIMNFRHLLEQHELARKIFSTVNHWLAECGVLMTQGTLVDATIIQAPSSTKNKHNSRDEDMHQTKKGNQWYFGMKAHIGVDAKSGLTHSLVTTAANE
HDLNQVGKLLHGDEEFISADAGYQGAEKRDELSDVSADWLIAKRPGKVNALKQHPRKNKLAIRYEYLKASIRAKVEHPFRIVKCQFGFVKARYKGLAKND
SQLAMLFTLANLVRVDQLIRAQARST
Blast result :
Comments
ISEc68 is 90% aa similar to ISVch9.
References
1] Erik Snesrud (2016) Direct submission.