ISEc68

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Escherichia coli
Escherichia coli
Escherichia coli MRSN346595
DNA section
IS Length : 1197 bp

Ends


IR Length : 15/17

IRL : GGAAGGTGCGAATAAGTCCGAGATGTGAGATCATCGTGTTGTAACCTGAA
IRR : GGAAGTTGCGATTAAGTGGTCCGCAGCTCCCGATATGACGCCCCAAACCG

Insertion site


Left flankDirect repeatRight flankDR Length
TTGctgttggttaacacgattcga4
GCAGCATCCCTTAACGCCTTACCG4

DNA sequence

GGAAGGTGCGAATAAGTCCGAGATGTGAGATCATCGTGTTGTAACCTGAACCCAGAATGAGTAACCGGATGAGCCAGCAACTGACTTTTGCCGACAGTGA
GTTTTCCAGTAAACGCCGCCAGACCCGCAAAGAAGTTTTCCTTGGCAGAATGGATGACTTGCTTCCCTGGGACAAATTACTTGGCGTTATCGAGCCTGTG
TATCCCAAGGCCGGTAATGGTCGCAGGCCCTATCCGCTGGAAACCATGCTGCGTATTCACTGCATGCAGCAATGGTACAACCTGAGCGATGAGGCCATGG
AAGATGCCCTCTATGAAATCGCCTCCATGCGCCAATTTGCTCGCCTGTCACTGGATAAAGCCATTCCAGACCGCACTACCATCATGAATTTCCGGCATTT
GCTGGAGCAGCATGAACTGGCCCGCAAAATCTTCAGTACCGTTAATCACTGGCTAGCAGAGTGTGGCGTTCTAATGACCCAGGGCACCTTGGTGGATGCC
ACCATCATTCAAGCCCCCAGCTCTACCAAAAACAAACACAACAGCCGTGATGAAGACATGCACCAGACCAAGAAAGGTAACCAGTGGTACTTCGGCATGA
AAGCGCACATTGGCGTGGACGCCAAAAGTGGCCTGACCCACAGTCTGGTGACCACGGCGGCTAACGAGCACGACCTCAATCAGGTTGGCAAGTTACTGCA
TGGCGATGAAGAATTTATCTCAGCCGATGCTGGTTATCAGGGGGCCGAAAAGCGCGATGAGCTCAGCGATGTCAGCGCAGACTGGCTTATCGCCAAGCGT
CCCGGCAAAGTGAATGCATTGAAGCAACACCCGCGCAAGAACAAGCTGGCCATCCGTTACGAATACCTGAAAGCGAGTATCCGAGCGAAGGTTGAGCATC
CATTTCGGATAGTAAAATGTCAGTTTGGTTTCGTCAAAGCCAGGTACAAGGGGCTGGCTAAAAATGACAGTCAACTGGCGATGTTATTCACCCTGGCGAA
CCTGGTTCGAGTTGACCAATTGATACGGGCACAGGCGAGATCTACCTGAAATGAGGAAATTGGCCTGAAACAGGGCCAAAATCAGCCACGAAGAGACGAT
TTTGGGCTGAAAATTGGAAAATTGAGCCACAGGACGTCGATAAAGGACGGTTTGGGGCGTCATATCGGGAGCTGCGGACCACTTAATCGCAACTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa691049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQQLTFADSEFSSKRRQTRKEVFLGRMDDLLPWDKLLGVIEPVYPKAGNGRRPYPLETMLRIHCMQQWYNLSDEAMEDALYEIASMRQFARLSLDKAIP
DRTTIMNFRHLLEQHELARKIFSTVNHWLAECGVLMTQGTLVDATIIQAPSSTKNKHNSRDEDMHQTKKGNQWYFGMKAHIGVDAKSGLTHSLVTTAANE
HDLNQVGKLLHGDEEFISADAGYQGAEKRDELSDVSADWLIAKRPGKVNALKQHPRKNKLAIRYEYLKASIRAKVEHPFRIVKCQFGFVKARYKGLAKND
SQLAMLFTLANLVRVDQLIRAQARST

 

Blast result :
Comments
ISEc68 is 90% aa similar to ISVch9.
References
1] Erik Snesrud (2016) Direct submission.