ISPa67

  • Family IS5
  • Group IS427
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
Pseudomonas aeruginosa IH2
DNA section
IS Length : 852 bp

Ends


IR Length : 14/16

IRL : GGCTGTTGCCGTTTCGATCTAACTGATTGATCTATAAAAGCAAACTCGTA
IRR : GGTCTGTTGCCATTTCACATGGGTAGCCACAGGAAGGCACAGGCCATGGC

Insertion site


Left flankDirect repeatRight flankDR Length
ccataggaggctaggttcaggtcgt5

DNA sequence

GGCTGTTGCCGTTTCGATCTAACTGATTGATCTATAAAAGCAAACTCGTATCGTTGAAGCTCTAACCCAACATCGATACGAGTTTGCAATGCCCCGATTA
CTGCTCAGCGATGAGCTTTGGTCGAAGCTGCGGGAAATTCTGCTGCACAAGGCCATCTACAACAAGCGTGATCTACGAATGACCGTGGAGGGCATGCTGT
ACCGCATGCGCACGGGCTGCCCCTGGAGAGACCTGCCTGCAGCGTTCGGGAACTGGAACAAGGTCTATAAACGCTTCAATGCATGGTCTGCTGCCGGCAA
ATGGCTCAAGGTCTTCAAGGTGCTTGTGGTGGAGCCCGACATGGAGTGGGTATTCATCGATGGCAGCTATGTCAAAGCTCACCAGCACAGTGCAGGTGCT
GCCAGCGGCAACGATGAGGCTATCGGTAAAAGTAGAGCTGGCAATACCAGCAAGATTCACCTGGCGGTGGACGCCCACGGTTTGCCCATCGAGTTTGAGA
TCACCGGTGGCCAAATCAATGACTGCACCCAGGCTCGCGCGTTGATTTCTAAGCTCCCAAGGGCAGAAACCATCGTTGCGGATAAAGGCTATGACAGCGA
GAAAGTCCGGGAGCAGATTGAGCGACAAGGGGCTAAGCCGGTGATCCCGAGAAAGCGTAACTCCGTGAAAGGCAATGCGGATCTGGATAGAGGGCTTTAC
CGCAATCGGCACCTGGTGGAAAACGCCTTTGCCCGGTTGAAACACTACCGGGCTGTGGCATCGCGATTCGACAAGCTCAAGAGAAATTACGAAAGCATGG
TGGCCATGGCCTGTGCCTTCCTGTGGCTACCCATGTGAAATGGCAACAGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
750 bp249 aa89838+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRLLLSDELWSKLREILLHKAIYNKRDLRMTVEGMLYRMRTGCPWRDLPAAFGNWNKVYKRFNAWSAAGKWLKVFKVLVVEPDMEWVFIDGSYVKAHQH
SAGAASGNDEAIGKSRAGNTSKIHLAVDAHGLPIEFEITGGQINDCTQARALISKLPRAETIVADKGYDSEKVREQIERQGAKPVIPRKRNSVKGNADLD
RGLYRNRHLVENAFARLKHYRAVASRFDKLKRNYESMVAMACAFLWLPM

 

Blast result :
Comments
ISPa67 is 76% aa similar to ISSpu10.
References
1] Seok Hoon Jeong (2016) Direct submission