ISPa67
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa Pseudomonas aeruginosa IH2 |
DNA section
IS Length : 852 bp
Ends
IR Length : 14/16
IRL : GGCTGTTGCCGTTTCGATCTAACTGATTGATCTATAAAAGCAAACTCGTA
IRR : GGTCTGTTGCCATTTCACATGGGTAGCCACAGGAAGGCACAGGCCATGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ccataggagg | ctagg | ttcaggtcgt | 5 |
DNA sequence
GGCTGTTGCCGTTTCGATCTAACTGATTGATCTATAAAAGCAAACTCGTATCGTTGAAGCTCTAACCCAACATCGATACGAGTTTGCAATGCCCCGATTA
CTGCTCAGCGATGAGCTTTGGTCGAAGCTGCGGGAAATTCTGCTGCACAAGGCCATCTACAACAAGCGTGATCTACGAATGACCGTGGAGGGCATGCTGT
ACCGCATGCGCACGGGCTGCCCCTGGAGAGACCTGCCTGCAGCGTTCGGGAACTGGAACAAGGTCTATAAACGCTTCAATGCATGGTCTGCTGCCGGCAA
ATGGCTCAAGGTCTTCAAGGTGCTTGTGGTGGAGCCCGACATGGAGTGGGTATTCATCGATGGCAGCTATGTCAAAGCTCACCAGCACAGTGCAGGTGCT
GCCAGCGGCAACGATGAGGCTATCGGTAAAAGTAGAGCTGGCAATACCAGCAAGATTCACCTGGCGGTGGACGCCCACGGTTTGCCCATCGAGTTTGAGA
TCACCGGTGGCCAAATCAATGACTGCACCCAGGCTCGCGCGTTGATTTCTAAGCTCCCAAGGGCAGAAACCATCGTTGCGGATAAAGGCTATGACAGCGA
GAAAGTCCGGGAGCAGATTGAGCGACAAGGGGCTAAGCCGGTGATCCCGAGAAAGCGTAACTCCGTGAAAGGCAATGCGGATCTGGATAGAGGGCTTTAC
CGCAATCGGCACCTGGTGGAAAACGCCTTTGCCCGGTTGAAACACTACCGGGCTGTGGCATCGCGATTCGACAAGCTCAAGAGAAATTACGAAAGCATGG
TGGCCATGGCCTGTGCCTTCCTGTGGCTACCCATGTGAAATGGCAACAGACC
CTGCTCAGCGATGAGCTTTGGTCGAAGCTGCGGGAAATTCTGCTGCACAAGGCCATCTACAACAAGCGTGATCTACGAATGACCGTGGAGGGCATGCTGT
ACCGCATGCGCACGGGCTGCCCCTGGAGAGACCTGCCTGCAGCGTTCGGGAACTGGAACAAGGTCTATAAACGCTTCAATGCATGGTCTGCTGCCGGCAA
ATGGCTCAAGGTCTTCAAGGTGCTTGTGGTGGAGCCCGACATGGAGTGGGTATTCATCGATGGCAGCTATGTCAAAGCTCACCAGCACAGTGCAGGTGCT
GCCAGCGGCAACGATGAGGCTATCGGTAAAAGTAGAGCTGGCAATACCAGCAAGATTCACCTGGCGGTGGACGCCCACGGTTTGCCCATCGAGTTTGAGA
TCACCGGTGGCCAAATCAATGACTGCACCCAGGCTCGCGCGTTGATTTCTAAGCTCCCAAGGGCAGAAACCATCGTTGCGGATAAAGGCTATGACAGCGA
GAAAGTCCGGGAGCAGATTGAGCGACAAGGGGCTAAGCCGGTGATCCCGAGAAAGCGTAACTCCGTGAAAGGCAATGCGGATCTGGATAGAGGGCTTTAC
CGCAATCGGCACCTGGTGGAAAACGCCTTTGCCCGGTTGAAACACTACCGGGCTGTGGCATCGCGATTCGACAAGCTCAAGAGAAATTACGAAAGCATGG
TGGCCATGGCCTGTGCCTTCCTGTGGCTACCCATGTGAAATGGCAACAGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
750 bp | 249 aa | 89 | 838 | + | No |
Chemistry : DDE
ORF sequence :
MPRLLLSDELWSKLREILLHKAIYNKRDLRMTVEGMLYRMRTGCPWRDLPAAFGNWNKVYKRFNAWSAAGKWLKVFKVLVVEPDMEWVFIDGSYVKAHQH
SAGAASGNDEAIGKSRAGNTSKIHLAVDAHGLPIEFEITGGQINDCTQARALISKLPRAETIVADKGYDSEKVREQIERQGAKPVIPRKRNSVKGNADLD
RGLYRNRHLVENAFARLKHYRAVASRFDKLKRNYESMVAMACAFLWLPM
SAGAASGNDEAIGKSRAGNTSKIHLAVDAHGLPIEFEITGGQINDCTQARALISKLPRAETIVADKGYDSEKVREQIERQGAKPVIPRKRNSVKGNADLD
RGLYRNRHLVENAFARLKHYRAVASRFDKLKRNYESMVAMACAFLWLPM
Blast result :
Comments
ISPa67 is 76% aa similar to ISSpu10.
References
1] Seok Hoon Jeong (2016) Direct submission