ISPch1
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AVBG01000003.1 | ND | Pontibacillus chungwhensis | Pontibacillus chungwhensis Pontibacillus chungwhensis BH030062 |
DNA section
IS Length : 1475 bp
Ends
IR Length : 24/29
IRL : GGCTCTGTTAAActcagttgttgatatttgctaaaatcgaacaaatgttc
IRR : GGCTCTGTTAAAgttcaatgttgatatttatagaaaaaaatataacttcc
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTCTCTCATTT | tttaatta | AAAAACCTGAAGC | 8 |
DNA sequence
GGCTCTGTTAAACTCAGTTGTTGATATTTGCTAAAATCGAACAAATGTTCTACAATGGAGTCAGAAAATATTAGTGGGTGATGACTGTGAGAGCAACCGA
TATTCTTAAAGCCATTCAAAAACTTAATCCTTCGGAAAAGCATCGTTTACGAGAATATTTAATAGATGCTCTTACTGCGTCATCCTTAACGGGAACCGTA
CTGGATGAAATCTCTGAACGTAAAAATAAGGATGGTTATCGTTGCCCCGATTGCGAGTCAGAACATATTGTGCGTTTCGGGAAATACTCCACTATCGTAG
AGGGTGAAGAAGTGAGGAAACAACGTTATCGCTGTAAAGCCTGTCGAAAGACCTTTACTGACCTCACCAATACGGCATTATATAGAACTCGTCATCTCCA
TCGTTGGATGAAGTTTATTGAATGTATGATAGAAGGATATTCGCTTCGTAAATCAACAGAGTTGATTGGTGGCGTTACTCATGTGACCTTGTTCTATTGG
AGGCACAAACTCTTGTCAGCACTAAAACAAATGGAAAGTTCAAAATTCCAAGGTATCGTTGAAATGGACGAGACCTATTTCCTATACTCAGAAAAAGGAC
AAAGGAAGATTGCCGATAGAAAACCTCGCCAACGGGGTGGTTCCGCAAAGAAACGCGGCATCAGTAACGAACAGGTATGTGTCTTAGTTGCAAGAGACCG
TGACAAGATGACCTTTTCCCAGACGTTAGGGATGGGACGATTAACAAAAGAGCAATTAGACAAAGCCATCGGGCATAAACTTTCCCACGAGAATGTATTA
TGCACCGATGCTTGGCGTGCCTTTAAAACCTATGCTGCTGAAAAGGAGTTATCGATTTACCAATTCAAATCTGACGGTAAAGTTCGCACCAAGGGTCTTT
ATCACATCCAAAACGTTAACAACTACCACCGAAGACTTAAAGGGTGGATACAGCGATTTAACGGTGTGGCGACTAAGTATCTGAACAATTATCTTGCGTG
GTTTCAAGTATTAGAAAGCATCCATCACCAAAGAAACGAAGTCACAATGAATGATATGATAGTAAAAGGAAATTTAATTCCAAGTGTGGAAACCTATGAT
ACACTAAGATTATCTAAGTTTACTGTATAAAGGTTATTTATTTACGAGGTTTTAATAGTGAAAGGAGGAATAGAAGATGTTCTCAAAAAAATACATGGGA
ATTGTTATTACAATTATCGGTGCAGTTATACTTATGGTTAGAGCAACTTTCCTATATTCCACTGTATATGCACAGATATTTCAAATAATAGGTCTTATTT
TATTTTTTGGTGGTGGAATACTTATTCCTGATTTTACAGGTGTACATAAACAAAAAAAAGAACAATAAACTTTGCGGATGACAATAAACCAAATATAACT
TCCTTTTGTGGAAGTTATATTTTTTTCTATAAATATCAACATTGAACTTTAACAGAGCC
TATTCTTAAAGCCATTCAAAAACTTAATCCTTCGGAAAAGCATCGTTTACGAGAATATTTAATAGATGCTCTTACTGCGTCATCCTTAACGGGAACCGTA
CTGGATGAAATCTCTGAACGTAAAAATAAGGATGGTTATCGTTGCCCCGATTGCGAGTCAGAACATATTGTGCGTTTCGGGAAATACTCCACTATCGTAG
AGGGTGAAGAAGTGAGGAAACAACGTTATCGCTGTAAAGCCTGTCGAAAGACCTTTACTGACCTCACCAATACGGCATTATATAGAACTCGTCATCTCCA
TCGTTGGATGAAGTTTATTGAATGTATGATAGAAGGATATTCGCTTCGTAAATCAACAGAGTTGATTGGTGGCGTTACTCATGTGACCTTGTTCTATTGG
AGGCACAAACTCTTGTCAGCACTAAAACAAATGGAAAGTTCAAAATTCCAAGGTATCGTTGAAATGGACGAGACCTATTTCCTATACTCAGAAAAAGGAC
AAAGGAAGATTGCCGATAGAAAACCTCGCCAACGGGGTGGTTCCGCAAAGAAACGCGGCATCAGTAACGAACAGGTATGTGTCTTAGTTGCAAGAGACCG
TGACAAGATGACCTTTTCCCAGACGTTAGGGATGGGACGATTAACAAAAGAGCAATTAGACAAAGCCATCGGGCATAAACTTTCCCACGAGAATGTATTA
TGCACCGATGCTTGGCGTGCCTTTAAAACCTATGCTGCTGAAAAGGAGTTATCGATTTACCAATTCAAATCTGACGGTAAAGTTCGCACCAAGGGTCTTT
ATCACATCCAAAACGTTAACAACTACCACCGAAGACTTAAAGGGTGGATACAGCGATTTAACGGTGTGGCGACTAAGTATCTGAACAATTATCTTGCGTG
GTTTCAAGTATTAGAAAGCATCCATCACCAAAGAAACGAAGTCACAATGAATGATATGATAGTAAAAGGAAATTTAATTCCAAGTGTGGAAACCTATGAT
ACACTAAGATTATCTAAGTTTACTGTATAAAGGTTATTTATTTACGAGGTTTTAATAGTGAAAGGAGGAATAGAAGATGTTCTCAAAAAAATACATGGGA
ATTGTTATTACAATTATCGGTGCAGTTATACTTATGGTTAGAGCAACTTTCCTATATTCCACTGTATATGCACAGATATTTCAAATAATAGGTCTTATTT
TATTTTTTGGTGGTGGAATACTTATTCCTGATTTTACAGGTGTACATAAACAAAAAAAAGAACAATAAACTTTGCGGATGACAATAAACCAAATATAACT
TCCTTTTGTGGAAGTTATATTTTTTTCTATAAATATCAACATTGAACTTTAACAGAGCC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1050 bp | 349 aa | 81 | 1130 | + | No |
Chemistry : DDE
ORF sequence :
MTVRATDILKAIQKLNPSEKHRLREYLIDALTASSLTGTVLDEISERKNKDGYRCPDCESEHIVRFGKYSTIVEGEEVRKQRYRCKACRKTFTDLTNTAL
YRTRHLHRWMKFIECMIEGYSLRKSTELIGGVTHVTLFYWRHKLLSALKQMESSKFQGIVEMDETYFLYSEKGQRKIADRKPRQRGGSAKKRGISNEQVC
VLVARDRDKMTFSQTLGMGRLTKEQLDKAIGHKLSHENVLCTDAWRAFKTYAAEKELSIYQFKSDGKVRTKGLYHIQNVNNYHRRLKGWIQRFNGVATKY
LNNYLAWFQVLESIHHQRNEVTMNDMIVKGNLIPSVETYDTLRLSKFTV
YRTRHLHRWMKFIECMIEGYSLRKSTELIGGVTHVTLFYWRHKLLSALKQMESSKFQGIVEMDETYFLYSEKGQRKIADRKPRQRGGSAKKRGISNEQVC
VLVARDRDKMTFSQTLGMGRLTKEQLDKAIGHKLSHENVLCTDAWRAFKTYAAEKELSIYQFKSDGKVRTKGLYHIQNVNNYHRRLKGWIQRFNGVATKY
LNNYLAWFQVLESIHHQRNEVTMNDMIVKGNLIPSVETYDTLRLSKFTV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
192 bp | 63 aa | 1177 | 1368 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MFSKKYMGIVITIIGAVILMVRATFLYSTVYAQIFQIIGLILFFGGGILIPDFTGVHKQKKEQ
Blast result :
Comments
ISPch1 is 94% (transposase) aa similar to ISBse1
References