ISCfr8
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Citrobacter freundii | Citrobacter freundii |
DNA section
IS Length : 2397 bp
Ends
IR Length : 22
IRL : TGGCCATTAATTTTGACCCACCCCAAGGTGGCCAACCGGCCAGAAATGCA
IRR : TGGCCATTAATTTTGACCCACCTTTGGCCAATAAAATTGACCCACCCTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGGCCATTAATTTTGACCCACCCCAAGGTGGCCAACCGGCCAGAAATGCAGATAGGGTTCCCAGCCTTTTGGCAGGCCGGGAACCGTTCTGATGATGAGG
TGGAACGTGATACACAAAATAAAATCATTACATGACGATGGCAAAGGACTTTCCATTCGGGCCATCAGCCGGGAGCTGGGCATCTCGCGCAACAGCGTGC
GCAAGTATCTGCGTCAGGATGAAACAACCACTGCCCGCAAGCTGGATAACCCTGTCCGCAGCAAACAGCTCGACACCTACCGGGGATACCTGATCAGCTT
GCTGGCCAGCTTTCCCGGGCTCAGTGCAGTCAAGATTGCCCGCAAGCTCAAGGAGAAACTGGGTGAGCTGCCGACCTCCGAGCGCAGTATTCGTCGTTAC
GTCAGCGCGCTGAAGGAAGAGGTTGCAACCGGTCAGCACCGATATTACGAGCCGGTGGTTGATGAGGTGCCGGGTGTGCAGTGCCAGGTTGACCCGGGCG
AGCTGCGTAACGTGCTGATTGGTGGCGTGGAAACAGTGGTGCACTTTGTTGTGTTTGTGCTGGCGTACTCGCGGCTGATGTATGTGGGCCTGTCGTTTAA
GCCGCTGGATACCCGGCAGTTCATCCAGCTGCATGACGAAGCGCTGCGCTACTTTGGCGGCATGCCTGAAGAGCTGGTGTACGACCAGACCAAGCTGGTG
GTGATTGAGGAGAAATACCGGGAGCTGACCCTCAACGAGCGTTTTCATCAGTACGCCACCACAGCCGGCTTTCGTATCCATGCTTGCGAAGGCTATGACC
CCGAGAGCAAGGGCAAGGTTGAAGCGGGCGTCAAATACGTCAAGCAGGACTGCTTTTACGGCGAGACCTTCCGTGATGAGCAGCACCTGCGCGAGCATGT
GCATCACTGGCTGGACAAGGTCGCCAATGTGCGGGCACACGGCACCACAGGTGAGGCACCTCAGCTGCGTTTTGAACGTGACGAACAGGCTCTGCTCAAG
CCCTACCTGTCACCCTCTTGCGTCACATCTGAAGCCCGTGAGACCCGCAAGGCGGATAAGACCGGACTGATCTCCTGGAAGGCCAACAAGTACTCTGTGC
CCATGGCCTGGCAGCAAAGCCGTGTCGGTGTGCTGGAAGACGACAGCCAGCTGCATGTGATTGATCTACAAACTGGCGAAGTGATTGCCCAGCATGCGTT
GGCGGGCGGCAAAGGTCAGATTATCAAAAACACCCACCACTACCGTGACCATGCCCAGCGCCGGCAGCAGCTGGAGCAGGACATTCAAGTACTGGTGGGC
GACGAGGCACTCAGCCTGGCCTTGTGTGATCAGTTGCGGAGATCCTTGCCCAAGGTCTATAAGGATCAACTGTTCGCAGTACGCAACCTGCTGAGTAAGC
ACGCACCTGTTGAACGGGACATGCTGTTGAACCTGAGCCAGAAGCCGGGCCTGACCGCCCGACAGATCGAAGCGTATCTGGTGGCCACCCAGCTGGCCAG
CCGGCGTGAGCGTCTGCCTGAGCCCGTGCCAGAGGCTCCGTCAGAGCTGGACTTGAGTGCATACCGACAGCTTGGCCGCTCGACTGGCCAGGAGGTGACC
CATGGGCATGCTTGAACAGACTGCCGCCCAGTACCGTAGCCTGCGCATGACCTCCATCGCCGCAGAGCTCGCCCAGTTACTGGCCGAGGCCGAAGCCAGT
GAAATGTCGTTCCTGAGCTTTGCACAGCGACTGGCTGAATACGAACTCCAGCAGCGTCAGGCCAACCGGGTACAGCGCAATTACAAGACGGCAGGCTTTC
CTGCGCACAAGCATCTGGAGGGCTTTGACTATCGCCACCAGACCACCATCAGCAAGCGCCAGATCAACAGCCTGCTGGACTTCCGGTTCATCGACGAGCG
CAACAACGTGATCTTCATCGGCCCGCCAGGCGTGGGCAAGACCCACCTGGCCATCGGGATTGGCCACAAGGCCGTCGAGGCCGGATACCGGGTATTGTTT
CGCACCGCGCTGGAGTTGGTGGAAGAACTGGAGCTGGCAGAAATGAAGGGCGAGCTGAAAAAGAAAATCAGCCAGCTGAGCAAGGTCGACCTCTTGATCA
TCGATGAGCTGGGCTACCTGCCCATGACCCGGCAGGCCCGCTACAACCTGTTCCAGCTGATCAACAGTCTGTACGAATACCGGTCTATCATCCTGACCAC
CAACAAGGACTTCACCTGCTGGGGCGAGTTCTTCCACGACGACAACGTGGCAGTACCGATCATCGACCGAATCATCCATCACTCACACATCTTTATGCTG
GGAGGAGAGAGCTATCGGCTGAAACAGAAAACAACGGGTTAAACGTGCAAGGGTGGGTCAATTTTATTGGCCAAAGGTGGGTCAAAATTAATGGCCA
TGGAACGTGATACACAAAATAAAATCATTACATGACGATGGCAAAGGACTTTCCATTCGGGCCATCAGCCGGGAGCTGGGCATCTCGCGCAACAGCGTGC
GCAAGTATCTGCGTCAGGATGAAACAACCACTGCCCGCAAGCTGGATAACCCTGTCCGCAGCAAACAGCTCGACACCTACCGGGGATACCTGATCAGCTT
GCTGGCCAGCTTTCCCGGGCTCAGTGCAGTCAAGATTGCCCGCAAGCTCAAGGAGAAACTGGGTGAGCTGCCGACCTCCGAGCGCAGTATTCGTCGTTAC
GTCAGCGCGCTGAAGGAAGAGGTTGCAACCGGTCAGCACCGATATTACGAGCCGGTGGTTGATGAGGTGCCGGGTGTGCAGTGCCAGGTTGACCCGGGCG
AGCTGCGTAACGTGCTGATTGGTGGCGTGGAAACAGTGGTGCACTTTGTTGTGTTTGTGCTGGCGTACTCGCGGCTGATGTATGTGGGCCTGTCGTTTAA
GCCGCTGGATACCCGGCAGTTCATCCAGCTGCATGACGAAGCGCTGCGCTACTTTGGCGGCATGCCTGAAGAGCTGGTGTACGACCAGACCAAGCTGGTG
GTGATTGAGGAGAAATACCGGGAGCTGACCCTCAACGAGCGTTTTCATCAGTACGCCACCACAGCCGGCTTTCGTATCCATGCTTGCGAAGGCTATGACC
CCGAGAGCAAGGGCAAGGTTGAAGCGGGCGTCAAATACGTCAAGCAGGACTGCTTTTACGGCGAGACCTTCCGTGATGAGCAGCACCTGCGCGAGCATGT
GCATCACTGGCTGGACAAGGTCGCCAATGTGCGGGCACACGGCACCACAGGTGAGGCACCTCAGCTGCGTTTTGAACGTGACGAACAGGCTCTGCTCAAG
CCCTACCTGTCACCCTCTTGCGTCACATCTGAAGCCCGTGAGACCCGCAAGGCGGATAAGACCGGACTGATCTCCTGGAAGGCCAACAAGTACTCTGTGC
CCATGGCCTGGCAGCAAAGCCGTGTCGGTGTGCTGGAAGACGACAGCCAGCTGCATGTGATTGATCTACAAACTGGCGAAGTGATTGCCCAGCATGCGTT
GGCGGGCGGCAAAGGTCAGATTATCAAAAACACCCACCACTACCGTGACCATGCCCAGCGCCGGCAGCAGCTGGAGCAGGACATTCAAGTACTGGTGGGC
GACGAGGCACTCAGCCTGGCCTTGTGTGATCAGTTGCGGAGATCCTTGCCCAAGGTCTATAAGGATCAACTGTTCGCAGTACGCAACCTGCTGAGTAAGC
ACGCACCTGTTGAACGGGACATGCTGTTGAACCTGAGCCAGAAGCCGGGCCTGACCGCCCGACAGATCGAAGCGTATCTGGTGGCCACCCAGCTGGCCAG
CCGGCGTGAGCGTCTGCCTGAGCCCGTGCCAGAGGCTCCGTCAGAGCTGGACTTGAGTGCATACCGACAGCTTGGCCGCTCGACTGGCCAGGAGGTGACC
CATGGGCATGCTTGAACAGACTGCCGCCCAGTACCGTAGCCTGCGCATGACCTCCATCGCCGCAGAGCTCGCCCAGTTACTGGCCGAGGCCGAAGCCAGT
GAAATGTCGTTCCTGAGCTTTGCACAGCGACTGGCTGAATACGAACTCCAGCAGCGTCAGGCCAACCGGGTACAGCGCAATTACAAGACGGCAGGCTTTC
CTGCGCACAAGCATCTGGAGGGCTTTGACTATCGCCACCAGACCACCATCAGCAAGCGCCAGATCAACAGCCTGCTGGACTTCCGGTTCATCGACGAGCG
CAACAACGTGATCTTCATCGGCCCGCCAGGCGTGGGCAAGACCCACCTGGCCATCGGGATTGGCCACAAGGCCGTCGAGGCCGGATACCGGGTATTGTTT
CGCACCGCGCTGGAGTTGGTGGAAGAACTGGAGCTGGCAGAAATGAAGGGCGAGCTGAAAAAGAAAATCAGCCAGCTGAGCAAGGTCGACCTCTTGATCA
TCGATGAGCTGGGCTACCTGCCCATGACCCGGCAGGCCCGCTACAACCTGTTCCAGCTGATCAACAGTCTGTACGAATACCGGTCTATCATCCTGACCAC
CAACAAGGACTTCACCTGCTGGGGCGAGTTCTTCCACGACGACAACGTGGCAGTACCGATCATCGACCGAATCATCCATCACTCACACATCTTTATGCTG
GGAGGAGAGAGCTATCGGCTGAAACAGAAAACAACGGGTTAAACGTGCAAGGGTGGGTCAATTTTATTGGCCAAAGGTGGGTCAAAATTAATGGCCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1509 bp | 502 aa | 107 | 1615 | + | No |
Chemistry : DDE
ORF sequence :
VIHKIKSLHDDGKGLSIRAISRELGISRNSVRKYLRQDETTTARKLDNPVRSKQLDTYRGYLISLLASFPGLSAVKIARKLKEKLGELPTSERSIRRYVS
ALKEEVATGQHRYYEPVVDEVPGVQCQVDPGELRNVLIGGVETVVHFVVFVLAYSRLMYVGLSFKPLDTRQFIQLHDEALRYFGGMPEELVYDQTKLVVI
EEKYRELTLNERFHQYATTAGFRIHACEGYDPESKGKVEAGVKYVKQDCFYGETFRDEQHLREHVHHWLDKVANVRAHGTTGEAPQLRFERDEQALLKPY
LSPSCVTSEARETRKADKTGLISWKANKYSVPMAWQQSRVGVLEDDSQLHVIDLQTGEVIAQHALAGGKGQIIKNTHHYRDHAQRRQQLEQDIQVLVGDE
ALSLALCDQLRRSLPKVYKDQLFAVRNLLSKHAPVERDMLLNLSQKPGLTARQIEAYLVATQLASRRERLPEPVPEAPSELDLSAYRQLGRSTGQEVTHG
HA
ALKEEVATGQHRYYEPVVDEVPGVQCQVDPGELRNVLIGGVETVVHFVVFVLAYSRLMYVGLSFKPLDTRQFIQLHDEALRYFGGMPEELVYDQTKLVVI
EEKYRELTLNERFHQYATTAGFRIHACEGYDPESKGKVEAGVKYVKQDCFYGETFRDEQHLREHVHHWLDKVANVRAHGTTGEAPQLRFERDEQALLKPY
LSPSCVTSEARETRKADKTGLISWKANKYSVPMAWQQSRVGVLEDDSQLHVIDLQTGEVIAQHALAGGKGQIIKNTHHYRDHAQRRQQLEQDIQVLVGDE
ALSLALCDQLRRSLPKVYKDQLFAVRNLLSKHAPVERDMLLNLSQKPGLTARQIEAYLVATQLASRRERLPEPVPEAPSELDLSAYRQLGRSTGQEVTHG
HA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
741 bp | 246 aa | 1602 | 2342 | + | No |
AG : IS21 helper
ORF sequence :
MGMLEQTAAQYRSLRMTSIAAELAQLLAEAEASEMSFLSFAQRLAEYELQQRQANRVQRNYKTAGFPAHKHLEGFDYRHQTTISKRQINSLLDFRFIDER
NNVIFIGPPGVGKTHLAIGIGHKAVEAGYRVLFRTALELVEELELAEMKGELKKKISQLSKVDLLIIDELGYLPMTRQARYNLFQLINSLYEYRSIILTT
NKDFTCWGEFFHDDNVAVPIIDRIIHHSHIFMLGGESYRLKQKTTG
NNVIFIGPPGVGKTHLAIGIGHKAVEAGYRVLFRTALELVEELELAEMKGELKKKISQLSKVDLLIIDELGYLPMTRQARYNLFQLINSLYEYRSIILTT
NKDFTCWGEFFHDDNVAVPIIDRIIHHSHIFMLGGESYRLKQKTTG
Blast result :
Comments
ISCfr8 (transposase) is 74% aa similar to ISCARN89.
References
[1] Zhou D. (2016) Direct submission