ISEc62
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Escherichia coli | Escherichia coli E24377A Escherichia coli plasmid p2075-10 Escherichia coli E24377A plasmid pETEC_74 Escherichia coli E24377A plasmid pETEC_73 |
DNA section
IS Length : 2125 bp
Ends
IR Length : 11/12
IRL : TGTCAACGCCAAGATTATTGGCCGTTTTTCGCCATTTTTAATGTCCGCTA
IRR : TGTCAGCGCCAATGATATAAGACAGTAATTCACCATTTGGATTGTCCGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATGTCCCGA | AAGA | CGCACTGCGG | 4 |
DNA sequence
TGTCAACGCCAAGATTATTGGCCGTTTTTCGCCATTTTTAATGTCCGCTATTGGTCATTAATGTTGTCCGCTTTCCGCCATTTCATCATCACTGATTGGC
GTGGCGTTTTTTGCCAGCACTCCCGCTTTGCGTTTTTCCTTTAACCGGTAGCTTTCTCCTTTGATGTTCAGTGTGGTTGAGTGGTGGAGCAGTCGATCCA
GGATTGCCGTTGCCAGCACGTTATCGCCGAACATCTCTCCCCAGTCGGCGAACCCTTTATTTGATGTCAGCACGATGCTCGCTTTTTCATATCGACGGTT
CAGCAACCGGAAGAACAGACTGGCTTCCTCGCGGGTCATCGGCAGATAGCCTATCTCATCCAGTATCAGTACCCGGGCATAACCAAGCTGCTGTAGCTGT
TTTTCCAGCCGGTTTTCCTGTTTTGCCTTCATGAGTGTGGCGATCAGCTTATCCAGTGGCATGAACAGTACCCGATGACCAGCGTCCGCCGCTTTTACCC
CGAGAGCGACTGCCAGGTGCGTTTTACCCACACCGGGCGGACCCAGCAGGATCACGTTCTCGCTACGCTCCACGAACGCCAGCCCGGCCAGCTCACGGAC
GACCTTACGATCGATACCTGGCTGGAAGCCGAAGTCGAACTGCTCCAGCGTTTTGACCCACGGGAAGCGGGCCTGTTTCAGCCGGGACTCCATACCGCGC
TGATGCCTCCCGTTCCATTCCTGCTGCAACGCCATGCACAGGAACTCGCGGTAGTTCAGTTCTTTTTTGGCCGCCTGCTCCAGCAGGCTTTCAACGTGGT
AGCCCAGATGTTCCATTTTAAGACGACTCAGCAGTGTCTCCAGTTCATGCATCACAACAGCTCCTCATACGTACTCAACGGTCTGTGTTCCACCTGACTG
ACCTGCTGCCAGAGTGGGGCGTGATGCTCCGGCACGGTTTGCCAGCTGGATGCAGCCGAACAGAGACGGTGCGATGCTACCTGTTGCTCATTACTGTAGA
TCCGTAGTTCATCATCCAGCGAGATCCGTATTGATACCGGCTGGCCACACAGGCTTTCCGGTACGCTGTAACGGTTCCCGCCAACCTCGATATAGCCATC
CCAGGAGACATGACGGATATCGAAATAGCTGGTATCGAAGTCCGTACCCGGCAGCGGATGCAGATGCTCCTGTTCCTGCGTGAAGCGCTGTTCCGGTGTC
TGCCTGAACTGGCGAAGTTCTCGCCTGTCAGCAACGTCAGCCATCCACTGCTCCAGTAGCTGGTTAACATGGGCGAAGCTGTCGAACCGGCGGTACCGGA
CGAAGAAGTTTTCCTTGAGGTATTTCACCATCCGTTCAACCTTACCTTTGGTTCTGGCCCTTCGTGGACGGCAGGCCCGTGGCAGGAAGCCATAGTGATC
GGCCAGCAGCAGGAACCCGGAGTTGAACACCACCTTCCCATTGTTATTTTTCAGAACTGCGGCTTTCTGGTTATCGACCAGCACGGTTTTCACGCTACCG
CCGAAGTAGCGAAAGGCGCGGACCAGTGACTCATAGGTATGTTCAGCATCCTGCTTTGGTGCCGCGAAGACATGGAAGCGACGTGAGAACCCCAGCGTAT
TAACCGCGAAGTTAACCCTGCATCGTTGCCCGGCAACCTCAGCCTCAACTTCTCCCCAGTCATGCTGTAGCTGGTAACCGGGCTGAGTTTCGAAGCGAAC
CGTTTTCTTCGATGGCCGCATCTTACGTTTGGGCTGGATGTAGTAGCGCAACATGGAACGGCCACCGGTATAACCCATCGCTTTGATTTCCGCCAGGATG
ACCTCGCCGTTCCAGACGTTCTCAGCCAGACGCATATCTATATAGTCCATGAACGGCTTGAGTTTGGCCATTTTGTGGCGTGTTTTTCTGGCCGGAGGTT
CCGGGTATTTCAGGTACCGTCTGACGGTCCGCTCAGAGCAACCAACCTGAGTGGCAATATCAACAATATACGCACCTTGCTGGCGCATTTGCTTTATCAT
GTAAAAATCCTCTCTGCTCAGCATGAGTGTTCCCTTTGTGGTGTAGGAACCTTAAGGAAACAACATGTTGGGTGGAGCGGACAATCCAAATGGTGAATTA
CTGTCTTATATCATTGGCGCTGACA
GTGGCGTTTTTTGCCAGCACTCCCGCTTTGCGTTTTTCCTTTAACCGGTAGCTTTCTCCTTTGATGTTCAGTGTGGTTGAGTGGTGGAGCAGTCGATCCA
GGATTGCCGTTGCCAGCACGTTATCGCCGAACATCTCTCCCCAGTCGGCGAACCCTTTATTTGATGTCAGCACGATGCTCGCTTTTTCATATCGACGGTT
CAGCAACCGGAAGAACAGACTGGCTTCCTCGCGGGTCATCGGCAGATAGCCTATCTCATCCAGTATCAGTACCCGGGCATAACCAAGCTGCTGTAGCTGT
TTTTCCAGCCGGTTTTCCTGTTTTGCCTTCATGAGTGTGGCGATCAGCTTATCCAGTGGCATGAACAGTACCCGATGACCAGCGTCCGCCGCTTTTACCC
CGAGAGCGACTGCCAGGTGCGTTTTACCCACACCGGGCGGACCCAGCAGGATCACGTTCTCGCTACGCTCCACGAACGCCAGCCCGGCCAGCTCACGGAC
GACCTTACGATCGATACCTGGCTGGAAGCCGAAGTCGAACTGCTCCAGCGTTTTGACCCACGGGAAGCGGGCCTGTTTCAGCCGGGACTCCATACCGCGC
TGATGCCTCCCGTTCCATTCCTGCTGCAACGCCATGCACAGGAACTCGCGGTAGTTCAGTTCTTTTTTGGCCGCCTGCTCCAGCAGGCTTTCAACGTGGT
AGCCCAGATGTTCCATTTTAAGACGACTCAGCAGTGTCTCCAGTTCATGCATCACAACAGCTCCTCATACGTACTCAACGGTCTGTGTTCCACCTGACTG
ACCTGCTGCCAGAGTGGGGCGTGATGCTCCGGCACGGTTTGCCAGCTGGATGCAGCCGAACAGAGACGGTGCGATGCTACCTGTTGCTCATTACTGTAGA
TCCGTAGTTCATCATCCAGCGAGATCCGTATTGATACCGGCTGGCCACACAGGCTTTCCGGTACGCTGTAACGGTTCCCGCCAACCTCGATATAGCCATC
CCAGGAGACATGACGGATATCGAAATAGCTGGTATCGAAGTCCGTACCCGGCAGCGGATGCAGATGCTCCTGTTCCTGCGTGAAGCGCTGTTCCGGTGTC
TGCCTGAACTGGCGAAGTTCTCGCCTGTCAGCAACGTCAGCCATCCACTGCTCCAGTAGCTGGTTAACATGGGCGAAGCTGTCGAACCGGCGGTACCGGA
CGAAGAAGTTTTCCTTGAGGTATTTCACCATCCGTTCAACCTTACCTTTGGTTCTGGCCCTTCGTGGACGGCAGGCCCGTGGCAGGAAGCCATAGTGATC
GGCCAGCAGCAGGAACCCGGAGTTGAACACCACCTTCCCATTGTTATTTTTCAGAACTGCGGCTTTCTGGTTATCGACCAGCACGGTTTTCACGCTACCG
CCGAAGTAGCGAAAGGCGCGGACCAGTGACTCATAGGTATGTTCAGCATCCTGCTTTGGTGCCGCGAAGACATGGAAGCGACGTGAGAACCCCAGCGTAT
TAACCGCGAAGTTAACCCTGCATCGTTGCCCGGCAACCTCAGCCTCAACTTCTCCCCAGTCATGCTGTAGCTGGTAACCGGGCTGAGTTTCGAAGCGAAC
CGTTTTCTTCGATGGCCGCATCTTACGTTTGGGCTGGATGTAGTAGCGCAACATGGAACGGCCACCGGTATAACCCATCGCTTTGATTTCCGCCAGGATG
ACCTCGCCGTTCCAGACGTTCTCAGCCAGACGCATATCTATATAGTCCATGAACGGCTTGAGTTTGGCCATTTTGTGGCGTGTTTTTCTGGCCGGAGGTT
CCGGGTATTTCAGGTACCGTCTGACGGTCCGCTCAGAGCAACCAACCTGAGTGGCAATATCAACAATATACGCACCTTGCTGGCGCATTTGCTTTATCAT
GTAAAAATCCTCTCTGCTCAGCATGAGTGTTCCCTTTGTGGTGTAGGAACCTTAAGGAAACAACATGTTGGGTGGAGCGGACAATCCAAATGGTGAATTA
CTGTCTTATATCATTGGCGCTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1173 bp | 390 aa | 102 | 1274 | + | No |
Chemistry : DDE
ORF sequence :
MLSREDFYMIKQMRQQGAYIVDIATQVGCSERTVRRYLKYPEPPARKTRHKMAKLKPFMDYIDMRLAENVWNGEVILAEIKAMGYTGGRSMLRYYIQPKR
KMRPSKKTVRFETQPGYQLQHDWGEVEAEVAGQRCRVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVF
NSGFLLLADHYGFLPRACRPRRARTKGKVERMVKYLKENFFVRYRRFDSFAHVNQLLEQWMADVADRRELRQFRQTPEQRFTQEQEHLHPLPGTDFDTSY
FDIRHVSWDGYIEVGGNRYSVPESLCGQPVSIRISLDDELRIYSNEQQVASHRLCSAASSWQTVPEHHAPLWQQVSQVEHRPLSTYEELL
KMRPSKKTVRFETQPGYQLQHDWGEVEAEVAGQRCRVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGSVKTVLVDNQKAAVLKNNNGKVVF
NSGFLLLADHYGFLPRACRPRRARTKGKVERMVKYLKENFFVRYRRFDSFAHVNQLLEQWMADVADRRELRQFRQTPEQRFTQEQEHLHPLPGTDFDTSY
FDIRHVSWDGYIEVGGNRYSVPESLCGQPVSIRISLDDELRIYSNEQQVASHRLCSAASSWQTVPEHHAPLWQQVSQVEHRPLSTYEELL
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
795 bp | 264 aa | 1274 | 2068 | + | No |
AG : IS21 helper
ORF sequence :
MHELETLLSRLKMEHLGYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARFPWVKTLEQFDFGFQPGIDRKVVRELAGLAFVERSENV
ILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLDKLIATLMKAKQENRLEKQLQQLGYARVLILDEIGYLPMTREEASLFFRLLNRRYEKASIVLTSNKG
FADWGEMFGDNVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLAKNATPISDDEMAESGQH
ILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLDKLIATLMKAKQENRLEKQLQQLGYARVLILDEIGYLPMTREEASLFFRLLNRRYEKASIVLTSNKG
FADWGEMFGDNVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLAKNATPISDDEMAESGQH
Blast result :
Comments
ISEc62 is 96% aa similar to IS21.
References