ISAcc2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JDSS02000041 ND Accumulibacter sp.
Accumulibacter sp. SK-01
Candidatus Accumulibacter sp. SK-01
DNA section
IS Length : 1608 bp

Ends


IR Length : 15/19

IRL : GAGGCTGTGAAAATATCCCGCGAGTCGGCCCGGGCACGGCGGAGCAGGTA
IRR : GAGGCTGTGAATTTTTCACTTCCGCACCGCGTTGGGCACAATTAGGCGGC

Insertion site


Left flankDirect repeatRight flankDR Length
ACTACGCGCGCTGAGCCGCCAGTTGCTCG3

DNA sequence

GAGGCTGTGAAAATATCCCGCGAGTCGGCCCGGGCACGGCGGAGCAGGTATAATGCTGGGGTCATTGATATTGTCAGGCTACGAGCATGATCGAGACTTC
CCTGCTTTTTCCCGACGAGCCGACGACGCCAGCGAAGCCGACGAGCCAGAGTTGTGCGAAGGCATCGTCACCGAAGGCGGCGGCGCGCGTACTGATGCCG
AACCGCAATCAGCTGGAATGGCGGGCGAGTGACCTGGAATCGCTGCTACCGCCTGGGCACCGAGCCAGGATCGTCTGGGGGTATGTTGAGCGGCAGAACC
TGGAAGGGCTGTATGCCGGAATCAAAGTGGTTGAGGGCGGAGTAGGACGAGCGGCAATTGAGCCGGAGATTCTGTACGCCCTGTGGCTTGACGCCACCCT
GGAAGGAGTCGGTGGTGCTCGTGCGCTGGCCAGACTGACGCAGGCTCATGACGCCTACCGGTGGATCTGTGGTGGCGTGCAAGTCAATGACCACACCTGG
GCCGATTTTCGCAGCCACCCAGGGGACGCCTTGGACGATCTGTTGACCGACAACGTCGCGAGTCTGATGGCCGCGGGAGCCGTCAAGCTCAAGGCGGCGG
CGCAGGACGGGATGCGAGTACGAGCGAGTGCCGGAGCCGCCTCGTTCCGGCGAGAAGAGAAGCTCAAAGCGTCCCTCGAAGCGGCGCGGGAGCAGGTGAG
CCGCCTCAAGGCGCAAGGGGATGACGACCCGGTCGGCGAAACAGCGCGCAAGCAAGCCGCACAGCGGCGTGCGGCGGCGGAACGGGAAGCGCGCATCGAA
GCCGCCTTGGCTCGGCTGCCCGAGCTGGCGGCGATCAAGAAGGGCCAAGGAAAGGACCCGAAGGAAGCGCGTGCCTCGACCACCGATGCTGACGCAACGG
TCATGAAGAGGGGGGATGGGGGATTTCGGCCGGCGTTCAACTTTCAGTACGCCACCGACACCGAAAGTCAGGTGATCATCGGGGTGGAGGTGGTGACCGC
CGGCAGCGACCCGGGACAGATGTCACCGATGGTTGAGCAGGTCAGCGAACGCTGTGGTCAGACCCCGGAGAGTTGGCTGGTCGATGGCGGCTATCCTGGG
CATGGGCAACTCGACGCGGTGGCCGAGGAGACCCCCGTCTATGCGCCCGTGCCGAAGACCAAAGACCCGACAGTCGACGTTCACCAAGCGAAGGCAAAGG
ACAGCCCGGCGGTAGCCCAATGGCGGGAACGTATGGGAAGCGATGAGGCCAAGGCTCTCTACAAGGATCGCGCGGCGACGGCCGAATGTGTGAATGCGCT
GGCACGCAACCGCGGCCTGAAGTGCTTACTAGTTCGCGGGCTGAAGAAAGTCAAGGGCGTCGCGTTGCTGTTCGCACTGGCGCACAACCTCATGCGCGCC
GCTACGCTCGCACCCGAACTGGTCGGCCTAGGGACAGGAACGTCCGCCGTACCGCAAATGGCAGGGTAATCGCGAGAAAAGCGCGGAAAAGGGGTAGATC
CAGGCCAAAAGGCTAGCCACGACATGCATTAAGCATAATTTGGCCCAGGCGGGCGCCAGCCGCCTAATTGTGCCCAACGCGGTGCGGAAGTGAAAAATTC
ACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa871469+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIETSLLFPDEPTTPAKPTSQSCAKASSPKAAARVLMPNRNQLEWRASDLESLLPPGHRARIVWGYVERQNLEGLYAGIKVVEGGVGRAAIEPEILYALW
LDATLEGVGGARALARLTQAHDAYRWICGGVQVNDHTWADFRSHPGDALDDLLTDNVASLMAAGAVKLKAAAQDGMRVRASAGAASFRREEKLKASLEAA
REQVSRLKAQGDDDPVGETARKQAAQRRAAAEREARIEAALARLPELAAIKKGQGKDPKEARASTTDADATVMKRGDGGFRPAFNFQYATDTESQVIIGV
EVVTAGSDPGQMSPMVEQVSERCGQTPESWLVDGGYPGHGQLDAVAEETPVYAPVPKTKDPTVDVHQAKAKDSPAVAQWRERMGSDEAKALYKDRAATAE
CVNALARNRGLKCLLVRGLKKVKGVALLFALAHNLMRAATLAPELVGLGTGTSAVPQMAG

 

Blast result :
Comments
ISAcc2 is 89% aa similar to ISAcc1.
References
1] ISfinder annotation (2016)
2] Skennerton,C.T., Barr,J.J., Slater,F.R., Bond,P.L. and Tyson,G.W. (2014) Direct submission GenBank.