ISBne1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LSEF01000065 | ND | Bradyrhizobium neotropicale | Bradyrhizobium neotropicale BR 10247 Bradyrhizobium manausense BR3351 |
DNA section
IS Length : 1512 bp
Ends
IR Length : 14/19
IRL : GAGACTGTGAATCTTTTTGTACCGGGCGTTGGGCGGATGTGATTCTCTGA
IRR : GAGCCTGTGAACCAATTCGGTTTGTTTCGGCATTTGCCATCAAGGAGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCCACCC | TAC | GGAAGCTACGCAAA | 3 |
DNA sequence
GAGACTGTGAATCTTTTTGTACCGGGCGTTGGGCGGATGTGATTCTCTGAGCAGGTTGATTGCTGGAGGCAGTGATGTCTGACGACGGACTTTTTGGCGA
ATTGCCGGAACAGTCGGGGCCACGAACCGAGGAGGTGCCGCGGGGTGGACCTCGGCTGCGCGAGCCTGTTCGCAATCAGATCGAGTTGCGAGCGGTCGAT
ATTGATAGCCTGATCGGGCAGGATCATCCGGCACGGGTGATCTGGGCTTATGTTGAGGGGCTGGACCTGAGCGAGCTGGAGGATCGGGTCAAGGCGAGGG
AAAACACGCCCGGCCATCCAGCACCGTCGCCGCGGCTGTTGCTGGCGCTTTGGCTTTACGCCACGAGCGATGGCGTTGGCAGCGCGCGTGCCTTGGACCG
ACTCTGCGATAGTCACGACGTCTATCGCTGGCTCTGCGGCGGCGTGTCTTTGAACCATCATACGCTGTCGGACTTCCGGGTCGGCTGTGCCGACTTGCTC
GACCGTTTGCTGGTCGAACATCTGATGGCCCTGAATGAGGCAGGGCTGGTCGATCTGGAGAAGCTGACTCAGGACGGGGTGCGGATACGGGCGAGTGCGG
GAACTGGCTCCTTCCGGCGGGAGGCGACGCTGGATCGGCAGATGGCACAGGCGAAGGCCGTAGTGGAAGAGCTCAGGCGCGAGGTTGATGCGGATCCGGA
AGCCAGCAATCGGCGCATCCGGGCTGCCAGGGAGCGTGCGGCGCGGGAACGCAGCGAGCGGGTGCAAGCGGCCCAAGCCGCGCTGGCTGAGATCAGGCGC
AAGCGAAAGCAGCTCGACGACAAGGGCGGCAACGGCAAAAAGCCGAAGGAATCACGTGCCTCCACCACTGATCCGCAAGCACGGGTGATGAAGATGGCGG
ATGCCGGCTTCCGCCCGGCCTACAATGTGCAGGTCGCCAGTGCAGCCGGCGAACTGCTCGTGGTCGCGATCGATGTCGACAACAGCGGCTCAGATCGTGG
CTTGATGCGGCCGATGCTGGAGCGAACGCGCGCTCGGCTGAAGCGCTTGCCAGGCCGCTACCTCGCCGATGGCGGGTTCTGCAGTGGCGAGGACATCGAA
TGGGCGCATGGCGAAGGTGTTGAGATTTACTGTCCTCCCCCCAAATCCAGGAGCGGTGTCGATCCCTTTTTACCCCGGAGCAGCGACGGTCCTGGGGTAG
CGGCTTGGCGTGCTCGCATGGCCAGCGAAGCCGGCAAGGCACAGTACCAAGCCCGCACGATCTGCGAATGCATCCATGCCCGATGGCGGAACTGGGACCT
CAGGCAATTGACCGTGCGCGGCATCGAGAAGATTCGTGCCGTCGTGCTCTGGTACGCCCTCACCAACAACATCCTGCAAGGACACCGTCTCGCAAAAGCA
TAGACCGCAGAAGCGGACCCGGCGGCCTGACGCCGCCGGCTTCTTGCCATCAGGGAGCCCTACCGCTCCTTGATGGCAAATGCCGAAACAAACCGAATTG
GTTCACAGGCTC
ATTGCCGGAACAGTCGGGGCCACGAACCGAGGAGGTGCCGCGGGGTGGACCTCGGCTGCGCGAGCCTGTTCGCAATCAGATCGAGTTGCGAGCGGTCGAT
ATTGATAGCCTGATCGGGCAGGATCATCCGGCACGGGTGATCTGGGCTTATGTTGAGGGGCTGGACCTGAGCGAGCTGGAGGATCGGGTCAAGGCGAGGG
AAAACACGCCCGGCCATCCAGCACCGTCGCCGCGGCTGTTGCTGGCGCTTTGGCTTTACGCCACGAGCGATGGCGTTGGCAGCGCGCGTGCCTTGGACCG
ACTCTGCGATAGTCACGACGTCTATCGCTGGCTCTGCGGCGGCGTGTCTTTGAACCATCATACGCTGTCGGACTTCCGGGTCGGCTGTGCCGACTTGCTC
GACCGTTTGCTGGTCGAACATCTGATGGCCCTGAATGAGGCAGGGCTGGTCGATCTGGAGAAGCTGACTCAGGACGGGGTGCGGATACGGGCGAGTGCGG
GAACTGGCTCCTTCCGGCGGGAGGCGACGCTGGATCGGCAGATGGCACAGGCGAAGGCCGTAGTGGAAGAGCTCAGGCGCGAGGTTGATGCGGATCCGGA
AGCCAGCAATCGGCGCATCCGGGCTGCCAGGGAGCGTGCGGCGCGGGAACGCAGCGAGCGGGTGCAAGCGGCCCAAGCCGCGCTGGCTGAGATCAGGCGC
AAGCGAAAGCAGCTCGACGACAAGGGCGGCAACGGCAAAAAGCCGAAGGAATCACGTGCCTCCACCACTGATCCGCAAGCACGGGTGATGAAGATGGCGG
ATGCCGGCTTCCGCCCGGCCTACAATGTGCAGGTCGCCAGTGCAGCCGGCGAACTGCTCGTGGTCGCGATCGATGTCGACAACAGCGGCTCAGATCGTGG
CTTGATGCGGCCGATGCTGGAGCGAACGCGCGCTCGGCTGAAGCGCTTGCCAGGCCGCTACCTCGCCGATGGCGGGTTCTGCAGTGGCGAGGACATCGAA
TGGGCGCATGGCGAAGGTGTTGAGATTTACTGTCCTCCCCCCAAATCCAGGAGCGGTGTCGATCCCTTTTTACCCCGGAGCAGCGACGGTCCTGGGGTAG
CGGCTTGGCGTGCTCGCATGGCCAGCGAAGCCGGCAAGGCACAGTACCAAGCCCGCACGATCTGCGAATGCATCCATGCCCGATGGCGGAACTGGGACCT
CAGGCAATTGACCGTGCGCGGCATCGAGAAGATTCGTGCCGTCGTGCTCTGGTACGCCCTCACCAACAACATCCTGCAAGGACACCGTCTCGCAAAAGCA
TAGACCGCAGAAGCGGACCCGGCGGCCTGACGCCGCCGGCTTCTTGCCATCAGGGAGCCCTACCGCTCCTTGATGGCAAATGCCGAAACAAACCGAATTG
GTTCACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1329 bp | 442 aa | 75 | 1403 | + | No |
Chemistry : DDE
ORF sequence :
MSDDGLFGELPEQSGPRTEEVPRGGPRLREPVRNQIELRAVDIDSLIGQDHPARVIWAYVEGLDLSELEDRVKARENTPGHPAPSPRLLLALWLYATSDG
VGSARALDRLCDSHDVYRWLCGGVSLNHHTLSDFRVGCADLLDRLLVEHLMALNEAGLVDLEKLTQDGVRIRASAGTGSFRREATLDRQMAQAKAVVEEL
RREVDADPEASNRRIRAARERAARERSERVQAAQAALAEIRRKRKQLDDKGGNGKKPKESRASTTDPQARVMKMADAGFRPAYNVQVASAAGELLVVAID
VDNSGSDRGLMRPMLERTRARLKRLPGRYLADGGFCSGEDIEWAHGEGVEIYCPPPKSRSGVDPFLPRSSDGPGVAAWRARMASEAGKAQYQARTICECI
HARWRNWDLRQLTVRGIEKIRAVVLWYALTNNILQGHRLAKA
VGSARALDRLCDSHDVYRWLCGGVSLNHHTLSDFRVGCADLLDRLLVEHLMALNEAGLVDLEKLTQDGVRIRASAGTGSFRREATLDRQMAQAKAVVEEL
RREVDADPEASNRRIRAARERAARERSERVQAAQAALAEIRRKRKQLDDKGGNGKKPKESRASTTDPQARVMKMADAGFRPAYNVQVASAAGELLVVAID
VDNSGSDRGLMRPMLERTRARLKRLPGRYLADGGFCSGEDIEWAHGEGVEIYCPPPKSRSGVDPFLPRSSDGPGVAAWRARMASEAGKAQYQARTICECI
HARWRNWDLRQLTVRGIEKIRAVVLWYALTNNILQGHRLAKA
Blast result :
Comments
ISBne1 is 83% aa similar to ISBrsp9.
References
1] ISfinder annotation (2016)
2] Simoes-Araujo,J.L., Barauna,A.C., Silva,K. and Zilli,J.E. (2016) Direct submission GenBank.
2] Simoes-Araujo,J.L., Barauna,A.C., Silva,K. and Zilli,J.E. (2016) Direct submission GenBank.