ISBne1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LSEF01000065 ND Bradyrhizobium neotropicale
Bradyrhizobium neotropicale BR 10247
Bradyrhizobium manausense BR3351
DNA section
IS Length : 1512 bp

Ends


IR Length : 14/19

IRL : GAGACTGTGAATCTTTTTGTACCGGGCGTTGGGCGGATGTGATTCTCTGA
IRR : GAGCCTGTGAACCAATTCGGTTTGTTTCGGCATTTGCCATCAAGGAGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
ACCCACCCTACGGAAGCTACGCAAA3

DNA sequence

GAGACTGTGAATCTTTTTGTACCGGGCGTTGGGCGGATGTGATTCTCTGAGCAGGTTGATTGCTGGAGGCAGTGATGTCTGACGACGGACTTTTTGGCGA
ATTGCCGGAACAGTCGGGGCCACGAACCGAGGAGGTGCCGCGGGGTGGACCTCGGCTGCGCGAGCCTGTTCGCAATCAGATCGAGTTGCGAGCGGTCGAT
ATTGATAGCCTGATCGGGCAGGATCATCCGGCACGGGTGATCTGGGCTTATGTTGAGGGGCTGGACCTGAGCGAGCTGGAGGATCGGGTCAAGGCGAGGG
AAAACACGCCCGGCCATCCAGCACCGTCGCCGCGGCTGTTGCTGGCGCTTTGGCTTTACGCCACGAGCGATGGCGTTGGCAGCGCGCGTGCCTTGGACCG
ACTCTGCGATAGTCACGACGTCTATCGCTGGCTCTGCGGCGGCGTGTCTTTGAACCATCATACGCTGTCGGACTTCCGGGTCGGCTGTGCCGACTTGCTC
GACCGTTTGCTGGTCGAACATCTGATGGCCCTGAATGAGGCAGGGCTGGTCGATCTGGAGAAGCTGACTCAGGACGGGGTGCGGATACGGGCGAGTGCGG
GAACTGGCTCCTTCCGGCGGGAGGCGACGCTGGATCGGCAGATGGCACAGGCGAAGGCCGTAGTGGAAGAGCTCAGGCGCGAGGTTGATGCGGATCCGGA
AGCCAGCAATCGGCGCATCCGGGCTGCCAGGGAGCGTGCGGCGCGGGAACGCAGCGAGCGGGTGCAAGCGGCCCAAGCCGCGCTGGCTGAGATCAGGCGC
AAGCGAAAGCAGCTCGACGACAAGGGCGGCAACGGCAAAAAGCCGAAGGAATCACGTGCCTCCACCACTGATCCGCAAGCACGGGTGATGAAGATGGCGG
ATGCCGGCTTCCGCCCGGCCTACAATGTGCAGGTCGCCAGTGCAGCCGGCGAACTGCTCGTGGTCGCGATCGATGTCGACAACAGCGGCTCAGATCGTGG
CTTGATGCGGCCGATGCTGGAGCGAACGCGCGCTCGGCTGAAGCGCTTGCCAGGCCGCTACCTCGCCGATGGCGGGTTCTGCAGTGGCGAGGACATCGAA
TGGGCGCATGGCGAAGGTGTTGAGATTTACTGTCCTCCCCCCAAATCCAGGAGCGGTGTCGATCCCTTTTTACCCCGGAGCAGCGACGGTCCTGGGGTAG
CGGCTTGGCGTGCTCGCATGGCCAGCGAAGCCGGCAAGGCACAGTACCAAGCCCGCACGATCTGCGAATGCATCCATGCCCGATGGCGGAACTGGGACCT
CAGGCAATTGACCGTGCGCGGCATCGAGAAGATTCGTGCCGTCGTGCTCTGGTACGCCCTCACCAACAACATCCTGCAAGGACACCGTCTCGCAAAAGCA
TAGACCGCAGAAGCGGACCCGGCGGCCTGACGCCGCCGGCTTCTTGCCATCAGGGAGCCCTACCGCTCCTTGATGGCAAATGCCGAAACAAACCGAATTG
GTTCACAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1329 bp442 aa751403+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSDDGLFGELPEQSGPRTEEVPRGGPRLREPVRNQIELRAVDIDSLIGQDHPARVIWAYVEGLDLSELEDRVKARENTPGHPAPSPRLLLALWLYATSDG
VGSARALDRLCDSHDVYRWLCGGVSLNHHTLSDFRVGCADLLDRLLVEHLMALNEAGLVDLEKLTQDGVRIRASAGTGSFRREATLDRQMAQAKAVVEEL
RREVDADPEASNRRIRAARERAARERSERVQAAQAALAEIRRKRKQLDDKGGNGKKPKESRASTTDPQARVMKMADAGFRPAYNVQVASAAGELLVVAID
VDNSGSDRGLMRPMLERTRARLKRLPGRYLADGGFCSGEDIEWAHGEGVEIYCPPPKSRSGVDPFLPRSSDGPGVAAWRARMASEAGKAQYQARTICECI
HARWRNWDLRQLTVRGIEKIRAVVLWYALTNNILQGHRLAKA

 

Blast result :
Comments
ISBne1 is 83% aa similar to ISBrsp9.
References
1] ISfinder annotation (2016)
2] Simoes-Araujo,J.L., Barauna,A.C., Silva,K. and Zilli,J.E. (2016) Direct submission GenBank.