ISThu1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP014646 | ND | Thauera humireducens | Thauera humireducens SgZ-1 |
DNA section
IS Length : 1637 bp
Ends
IR Length : 13/16
IRL : GAACGTGTGAATCAATCTCGGCTGAGATCGGATATCGTTCAGGCCATGAA
IRR : GAAGGCGTGAATAAATTGCCGACGCTCGCGGCGAGCGCAATGCGAAGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACAAGGACCGGCTGCGCAGTC | TCA | GCGGAAGGAGCCGGGGTTGCGGCCG | 3 |
AGGGATTTCAGCGCCCTTCCTC | TCA | GCGCAGCTGCTCGCCCAGCCGGTTC | 3 |
CAACTCGCTCATCGCCAGGCCC | TCA | GCCGACAGCCGCGCGGGGTCGGTGA | 3 |
DNA sequence
GAACGTGTGAATCAATCTCGGCTGAGATCGGATATCGTTCAGGCCATGAAGCCCGAGCCGAATTCGCCGACCGAGGGGCAGCGTAGCGCTGCGTTGTTTG
ACGACTTGCCGGTCCCGGCTGAAGGCGCGGCGGCACCTGCCGATGCGCCCCAGGGACGCCCGCGCGTGCAGACGGCGCAGCGCAACCAGATCGAGTTGCG
CGCCTGCGACCTGGATGCATTGCTTGCCCCCGGGCATGCCGCGCGCACCGTGTGGGCCTTCGTGCAATCGCTCGACCTGGCGCCGCTGTATGCGCGCATC
AAGGCCGTGGAAGGCCGCGCGGGCCGGGCGGCGATCGATCCGGCAATCCTGGTGGGGCTGTGGCTGTACGCGACGATCGATGGTGTGGGTTCGGCGCGCG
AACTGAACCGGCTGTGCGAGCGCGACGATGCCTACCGCTGGCTGTGCGGGGGCGTCGGGGTCAATTATCACAGTCTGGCCGACTTTCGCACCGAGCACGC
CGCCTGGCTCGACGCACAGCTCACGCGCAGCGTAGCGGCCTTACTCGATCGGGGGTTGGTTCAGCTCAACCGCGTCGCCCAGGACGGCATGCGGGTGCGC
GCCCATGCCAAAGCGGCCAGCTTCCGCCGCCGCGACCGGCTCGCCCGCCTGCTGGCAGAGGCGCGTGCGCAGGTCGAGCGGCTCAAGCAGGAACTGCATG
ACGATCCGGCGGCGAGCAGCCGCCGCCAGCAGGCCGCCCGGGAACGGGCCGCGCGCGAGCGCGAGCAGCGCCTGGCCCGGGCATTGGCGACCCTGGACGA
GCTCGACAAGGTCCAGACGAAGAAGGGACGGACTGACAAACGCAAGGCCGCACCGCCGCCCGACGACGAGCCGCCGGGCAGCGCGCCGCGCGTGAGCACC
ACCGACAGCCAGGCGCGGGTGATGAAGATGGCCGACGGCGGCTTTCGCCCCGCCTTCAATGCGCAACTCGCCGTCGATGCCGATACCCAGATCATCGCCG
CGCTCGAGCTGACCAATGCCGGTACCGACATGCAGCAGATGGCGCCGATGCACACCCAACTGCGCAACCGCTATGGCCGCACGCCCGCCCAGTGGCTGGC
CGACGGCGGCTTCGCCAAGCTCGAGCACATCACGGCGCTCAGCGCCGCGGGCACCGAGCCCTACGTGCCGGTGCCCGCCAGCCGCAACCCAACCATCGAC
CCGCACCTGCCCAAGGACGGTGACAGCGCGGCCGTCGCCCGGTGGCGGGCCCGCATGGGCACCGCGGACGCTGCCGAAATCTACAAGGCGCGCGCGGCCA
GCGTCGAATGTGCCAATGCCCAGTTGCGCCGTCGCGGGCTGCACCGGTTCAATGTCTGCGGCACCGTCAAGGCACGCGCCATCCTGCTCTGGCATGCGCT
TGCCCATAACCTGATGCGGGTGGCGGCCCTGGAGGCCGCAGCAGCCCACTAAACAACGCCGACGGCGCCGCCCAAAAAGGCTCTGCGCCACGCAGCACCG
CCGGCTCCCATCTGATCAAACGGCCGCACCGCCGGTAGCTTCGGCCCGTCGGCGGCTTACGCCGACAAAGCGGTCCTCGGCCTACGCGCTCTTCGCATTG
CGCTCGCCGCGAGCGTCGGCAATTTATTCACGCCTTC
ACGACTTGCCGGTCCCGGCTGAAGGCGCGGCGGCACCTGCCGATGCGCCCCAGGGACGCCCGCGCGTGCAGACGGCGCAGCGCAACCAGATCGAGTTGCG
CGCCTGCGACCTGGATGCATTGCTTGCCCCCGGGCATGCCGCGCGCACCGTGTGGGCCTTCGTGCAATCGCTCGACCTGGCGCCGCTGTATGCGCGCATC
AAGGCCGTGGAAGGCCGCGCGGGCCGGGCGGCGATCGATCCGGCAATCCTGGTGGGGCTGTGGCTGTACGCGACGATCGATGGTGTGGGTTCGGCGCGCG
AACTGAACCGGCTGTGCGAGCGCGACGATGCCTACCGCTGGCTGTGCGGGGGCGTCGGGGTCAATTATCACAGTCTGGCCGACTTTCGCACCGAGCACGC
CGCCTGGCTCGACGCACAGCTCACGCGCAGCGTAGCGGCCTTACTCGATCGGGGGTTGGTTCAGCTCAACCGCGTCGCCCAGGACGGCATGCGGGTGCGC
GCCCATGCCAAAGCGGCCAGCTTCCGCCGCCGCGACCGGCTCGCCCGCCTGCTGGCAGAGGCGCGTGCGCAGGTCGAGCGGCTCAAGCAGGAACTGCATG
ACGATCCGGCGGCGAGCAGCCGCCGCCAGCAGGCCGCCCGGGAACGGGCCGCGCGCGAGCGCGAGCAGCGCCTGGCCCGGGCATTGGCGACCCTGGACGA
GCTCGACAAGGTCCAGACGAAGAAGGGACGGACTGACAAACGCAAGGCCGCACCGCCGCCCGACGACGAGCCGCCGGGCAGCGCGCCGCGCGTGAGCACC
ACCGACAGCCAGGCGCGGGTGATGAAGATGGCCGACGGCGGCTTTCGCCCCGCCTTCAATGCGCAACTCGCCGTCGATGCCGATACCCAGATCATCGCCG
CGCTCGAGCTGACCAATGCCGGTACCGACATGCAGCAGATGGCGCCGATGCACACCCAACTGCGCAACCGCTATGGCCGCACGCCCGCCCAGTGGCTGGC
CGACGGCGGCTTCGCCAAGCTCGAGCACATCACGGCGCTCAGCGCCGCGGGCACCGAGCCCTACGTGCCGGTGCCCGCCAGCCGCAACCCAACCATCGAC
CCGCACCTGCCCAAGGACGGTGACAGCGCGGCCGTCGCCCGGTGGCGGGCCCGCATGGGCACCGCGGACGCTGCCGAAATCTACAAGGCGCGCGCGGCCA
GCGTCGAATGTGCCAATGCCCAGTTGCGCCGTCGCGGGCTGCACCGGTTCAATGTCTGCGGCACCGTCAAGGCACGCGCCATCCTGCTCTGGCATGCGCT
TGCCCATAACCTGATGCGGGTGGCGGCCCTGGAGGCCGCAGCAGCCCACTAAACAACGCCGACGGCGCCGCCCAAAAAGGCTCTGCGCCACGCAGCACCG
CCGGCTCCCATCTGATCAAACGGCCGCACCGCCGGTAGCTTCGGCCCGTCGGCGGCTTACGCCGACAAAGCGGTCCTCGGCCTACGCGCTCTTCGCATTG
CGCTCGCCGCGAGCGTCGGCAATTTATTCACGCCTTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1287 bp | 428 aa | 166 | 1452 | + | No |
Chemistry : DDE
ORF sequence :
MQTAQRNQIELRACDLDALLAPGHAARTVWAFVQSLDLAPLYARIKAVEGRAGRAAIDPAILVGLWLYATIDGVGSARELNRLCERDDAYRWLCGGVGVN
YHSLADFRTEHAAWLDAQLTRSVAALLDRGLVQLNRVAQDGMRVRAHAKAASFRRRDRLARLLAEARAQVERLKQELHDDPAASSRRQQAARERAARERE
QRLARALATLDELDKVQTKKGRTDKRKAAPPPDDEPPGSAPRVSTTDSQARVMKMADGGFRPAFNAQLAVDADTQIIAALELTNAGTDMQQMAPMHTQLR
NRYGRTPAQWLADGGFAKLEHITALSAAGTEPYVPVPASRNPTIDPHLPKDGDSAAVARWRARMGTADAAEIYKARAASVECANAQLRRRGLHRFNVCGT
VKARAILLWHALAHNLMRVAALEAAAAH
YHSLADFRTEHAAWLDAQLTRSVAALLDRGLVQLNRVAQDGMRVRAHAKAASFRRRDRLARLLAEARAQVERLKQELHDDPAASSRRQQAARERAARERE
QRLARALATLDELDKVQTKKGRTDKRKAAPPPDDEPPGSAPRVSTTDSQARVMKMADGGFRPAFNAQLAVDADTQIIAALELTNAGTDMQQMAPMHTQLR
NRYGRTPAQWLADGGFAKLEHITALSAAGTEPYVPVPASRNPTIDPHLPKDGDSAAVARWRARMGTADAAEIYKARAASVECANAQLRRRGLHRFNVCGT
VKARAILLWHALAHNLMRVAALEAAAAH
Blast result :
Comments
ISThu1 is 65% aa similar to ISAde2.
References
1] ISfinder annotation (2016)
2] Ma,C., Yang,G. and Zhou,S. (2016) Direct submission GenBank.
2] Ma,C., Yang,G. and Zhou,S. (2016) Direct submission GenBank.