ISThu1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP014646 ND Thauera humireducens
Thauera humireducens SgZ-1
DNA section
IS Length : 1637 bp

Ends


IR Length : 13/16

IRL : GAACGTGTGAATCAATCTCGGCTGAGATCGGATATCGTTCAGGCCATGAA
IRR : GAAGGCGTGAATAAATTGCCGACGCTCGCGGCGAGCGCAATGCGAAGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
GACAAGGACCGGCTGCGCAGTCTCAGCGGAAGGAGCCGGGGTTGCGGCCG3
AGGGATTTCAGCGCCCTTCCTCTCAGCGCAGCTGCTCGCCCAGCCGGTTC3
CAACTCGCTCATCGCCAGGCCCTCAGCCGACAGCCGCGCGGGGTCGGTGA3

DNA sequence

GAACGTGTGAATCAATCTCGGCTGAGATCGGATATCGTTCAGGCCATGAAGCCCGAGCCGAATTCGCCGACCGAGGGGCAGCGTAGCGCTGCGTTGTTTG
ACGACTTGCCGGTCCCGGCTGAAGGCGCGGCGGCACCTGCCGATGCGCCCCAGGGACGCCCGCGCGTGCAGACGGCGCAGCGCAACCAGATCGAGTTGCG
CGCCTGCGACCTGGATGCATTGCTTGCCCCCGGGCATGCCGCGCGCACCGTGTGGGCCTTCGTGCAATCGCTCGACCTGGCGCCGCTGTATGCGCGCATC
AAGGCCGTGGAAGGCCGCGCGGGCCGGGCGGCGATCGATCCGGCAATCCTGGTGGGGCTGTGGCTGTACGCGACGATCGATGGTGTGGGTTCGGCGCGCG
AACTGAACCGGCTGTGCGAGCGCGACGATGCCTACCGCTGGCTGTGCGGGGGCGTCGGGGTCAATTATCACAGTCTGGCCGACTTTCGCACCGAGCACGC
CGCCTGGCTCGACGCACAGCTCACGCGCAGCGTAGCGGCCTTACTCGATCGGGGGTTGGTTCAGCTCAACCGCGTCGCCCAGGACGGCATGCGGGTGCGC
GCCCATGCCAAAGCGGCCAGCTTCCGCCGCCGCGACCGGCTCGCCCGCCTGCTGGCAGAGGCGCGTGCGCAGGTCGAGCGGCTCAAGCAGGAACTGCATG
ACGATCCGGCGGCGAGCAGCCGCCGCCAGCAGGCCGCCCGGGAACGGGCCGCGCGCGAGCGCGAGCAGCGCCTGGCCCGGGCATTGGCGACCCTGGACGA
GCTCGACAAGGTCCAGACGAAGAAGGGACGGACTGACAAACGCAAGGCCGCACCGCCGCCCGACGACGAGCCGCCGGGCAGCGCGCCGCGCGTGAGCACC
ACCGACAGCCAGGCGCGGGTGATGAAGATGGCCGACGGCGGCTTTCGCCCCGCCTTCAATGCGCAACTCGCCGTCGATGCCGATACCCAGATCATCGCCG
CGCTCGAGCTGACCAATGCCGGTACCGACATGCAGCAGATGGCGCCGATGCACACCCAACTGCGCAACCGCTATGGCCGCACGCCCGCCCAGTGGCTGGC
CGACGGCGGCTTCGCCAAGCTCGAGCACATCACGGCGCTCAGCGCCGCGGGCACCGAGCCCTACGTGCCGGTGCCCGCCAGCCGCAACCCAACCATCGAC
CCGCACCTGCCCAAGGACGGTGACAGCGCGGCCGTCGCCCGGTGGCGGGCCCGCATGGGCACCGCGGACGCTGCCGAAATCTACAAGGCGCGCGCGGCCA
GCGTCGAATGTGCCAATGCCCAGTTGCGCCGTCGCGGGCTGCACCGGTTCAATGTCTGCGGCACCGTCAAGGCACGCGCCATCCTGCTCTGGCATGCGCT
TGCCCATAACCTGATGCGGGTGGCGGCCCTGGAGGCCGCAGCAGCCCACTAAACAACGCCGACGGCGCCGCCCAAAAAGGCTCTGCGCCACGCAGCACCG
CCGGCTCCCATCTGATCAAACGGCCGCACCGCCGGTAGCTTCGGCCCGTCGGCGGCTTACGCCGACAAAGCGGTCCTCGGCCTACGCGCTCTTCGCATTG
CGCTCGCCGCGAGCGTCGGCAATTTATTCACGCCTTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1287 bp428 aa1661452+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQTAQRNQIELRACDLDALLAPGHAARTVWAFVQSLDLAPLYARIKAVEGRAGRAAIDPAILVGLWLYATIDGVGSARELNRLCERDDAYRWLCGGVGVN
YHSLADFRTEHAAWLDAQLTRSVAALLDRGLVQLNRVAQDGMRVRAHAKAASFRRRDRLARLLAEARAQVERLKQELHDDPAASSRRQQAARERAARERE
QRLARALATLDELDKVQTKKGRTDKRKAAPPPDDEPPGSAPRVSTTDSQARVMKMADGGFRPAFNAQLAVDADTQIIAALELTNAGTDMQQMAPMHTQLR
NRYGRTPAQWLADGGFAKLEHITALSAAGTEPYVPVPASRNPTIDPHLPKDGDSAAVARWRARMGTADAAEIYKARAASVECANAQLRRRGLHRFNVCGT
VKARAILLWHALAHNLMRVAALEAAAAH

 

Blast result :
Comments
ISThu1 is 65% aa similar to ISAde2.
References
1] ISfinder annotation (2016)
2] Ma,C., Yang,G. and Zhou,S. (2016) Direct submission GenBank.