ISAcc1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JDSS02000010 ND Accumulibacter sp.
Accumulibacter sp. SK-01
Candidatus Accumulibacter sp. SK-01
DNA section
IS Length : 1610 bp

Ends


IR Length : 15/18

IRL : GAGGCTGTGAAAATATTCCCCCAAGTCCGCCCGCCAGCGTGGCGCGTCCT
IRR : GAGGCTGTGAATTTTTCACTTCTGCGCCACAGTCGGCGCGACCGGACGCT

Insertion site


Left flankDirect repeatRight flankDR Length
GTCGGTTGGTGACTTGGCCTGAGCCTGCAGGCAGGGC3

DNA sequence

GAGGCTGTGAAAATATTCCCCCAAGTCCGCCCGCCAGCGTGGCGCGTCCTGTATAATGACGTGATCATTTCCCACGCGACCTCCTGCTCATGACCACGAC
GATCCCTCTGTTCCCCGGCGAAGCGACGCTGCCGGCCAACCCAAGCGACGAAGGCCCTGCGAGAGCCGTACTGCCCAAGGCCTCGGCCCGTGTTCTGATG
CCCAACCGCAATCAACTAGAACTGCGGGCGAGCGACCTCGAATCGCTGGTCCCGCCTGGGCACCGGGCGCGGATTGTCTGGGGCTACGTGGAGCGGCAGG
ACCTGAGCGGGCTGTACGCCGGCATCAAAGCGGTGGAGGGTGGCGTGGGACGGGCGGCGATCGCCCCGGAAATTCTGTTTGCCCTGTGGCTTTACGCCAC
GGTGGAAGGCGTCGGCAGTGCCCGGACCATTACCCGACTGACGCAGGCGCATGATGCCTACCGGTGGATCTGTGGTGGCGTGCAGGTCAATTACCACACC
GTAGCCGACTTTCGCAGTCACCATGGCGACGCCCTGGACGAACTGCTGACCGATAACGTGGCGAGCCTGATGGCGGCGGGTGTCGTCAAGTTCAAAACGG
CAGCGCAGGACGGGATGCGGGTACGGGCCAGCGCCGGGGCCGCCTCATTCCGGCGGGAAGAACGGCTGAAAGCCTGCCTGGAAGCGGCGCGAGACCAGGT
CGCCACGCTCAAGGCGCAACAGGCAGACGACCCCGCGGGCGAGAGCGCGCGCAAGCAAGCGGCGCAACTGCGTGCGGTGAGCGAACGGGAGGCGCGCATT
GAAGCCGCGCTGGCCCGGCAGCCGGAACTGGCCGCCATCAAGAAGAAGCAAGGCAAGAAGCCGGAGGAAGCCCGGAGTTCGACCACCGACGCCGACGCGA
CGATCATGAAGATGGGCGATGGCGGATTTCGGCCGGCGTACAACCTTCAGTTCGCCACCGATGCCGAAAGCCAGGGGGTCTTCGGCGTCGAGGTCGTGAC
CGCCGGTACCGACCAGGGTCAGCTGTCACCGATGGTCGAGCAAGTCAGCGAACGCTGCGGTCAGACCCCGGAGAACTGGCTGGTTGATGGCGGCTATCCG
GGCCATGGGCAGATCGATGCGGTCGCGAAAAGCACTACTGTCTACGCACCGGTGCCGAAAGCCAAGGACCCGAAAACGGACGTTCACCAACCGAAGGCCA
AGGATAGCCCGGCGGTGGCCCAATGGCGGGAACGCATGAAAAGTGACGAGGCCAAGGCGCTCTACAAGGAGCGCGCGGCGACGGCCGAATGTGTCAATGC
GCTGGCACGCAACCGAGGCCTGAATCGCCTACTGGTCCGCGGTCTGAAGAGAGTCAAGGGCGTCGCGCTCCTGTTCGCCCTGGCGCACAACCTGATGCGT
GCCGCCACCCTCGCCCCCGAACTGGTCGGCCTAGGGACAGGAACGTCCGCAGTACCGCAAATGGCAGGGTAATCGGGGGAAAGGCGCGGAAAAAGGGTAG
ATCCAGGCCGAACAGCTAGTCAAAACATGCATTCCCCATACTTCGCCCCAGGATGGCGCCAGCGTCCGGTCGCGCCGACTGTGGCGCAGAAGTGAAAAAT
TCACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1383 bp460 aa901472+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTTTIPLFPGEATLPANPSDEGPARAVLPKASARVLMPNRNQLELRASDLESLVPPGHRARIVWGYVERQDLSGLYAGIKAVEGGVGRAAIAPEILFALW
LYATVEGVGSARTITRLTQAHDAYRWICGGVQVNYHTVADFRSHHGDALDELLTDNVASLMAAGVVKFKTAAQDGMRVRASAGAASFRREERLKACLEAA
RDQVATLKAQQADDPAGESARKQAAQLRAVSEREARIEAALARQPELAAIKKKQGKKPEEARSSTTDADATIMKMGDGGFRPAYNLQFATDAESQGVFGV
EVVTAGTDQGQLSPMVEQVSERCGQTPENWLVDGGYPGHGQIDAVAKSTTVYAPVPKAKDPKTDVHQPKAKDSPAVAQWRERMKSDEAKALYKERAATAE
CVNALARNRGLNRLLVRGLKRVKGVALLFALAHNLMRAATLAPELVGLGTGTSAVPQMAG

 

Blast result :
Comments
ISAcc1 is 65% aa similar to ISAde2.
References
1] ISfinder annotation (2016)
2] Skennerton,C.T., Barr,J.J., Slater,F.R., Bond,P.L. and Tyson,G.W. (2014) Direct submission GenBank.