ISPlpa2
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ABCS01000113 | ND | Plesiocystis pacifica | Plesiocystis pacifica SIR-1 |
DNA section
IS Length : 1572 bp
Ends
IR Length : 13/20
IRL : GAGTTTGTGAACTTTTCCTCTCGGTGTGGGATCACAAGCACCGAGAGGGA
IRR : GAGGCTGTAAGTCTTTCCCCGAAGTCGTGCACGGACTCGGGCCGACGCGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGGACTGTGAAATCTTCACGGTC | TGA | GCCGTGGACGTGGGGCAGG | 3 |
DNA sequence
GAGTTTGTGAACTTTTCCTCTCGGTGTGGGATCACAAGCACCGAGAGGGAAGTCATGCCGAAGTCGCGCCGAGAGAAGCCCCGCCTGCGAGAAGCCGAGC
GCCACCAGCTCGAGTTTCGCTCCTACAACCTCGACTCGCTGTTGGCTGATGACCATCGAGCCCGACTGCTATGGGCAGCGGTCGGGCAGCTCGACCTCTC
GAGCTTCTACGACGCGATCGAAGCCCGAGGAGCGCAGCCAGGACGACCCGCCACGGATCCCAAGGTGTTGCTGACCCTGTGGCTGTACGCGATCTCGGAG
GGCATTGGGAGTGCTCGTCACCTCGCGCGGCTGTGCGAGCGAGACAACGTCTATCGATGGATCTGTGGCGGCTTGAGCATGAACCATCACACGCTGGCGG
AGTTTCGGACGGGGCACGGAGACAAGCTCGACGAGCTGATGACCCAGCTGCTGGCGACGCTGATGCACCAGGGCCTGGTGACGCTGAGGCAGGTCTCCCA
AGACGGCGTCCGTGTACGAGCGAGCGCAGGAGCAGGCTCGTTTCGACGCCGGGCGACCCTCAACAAGTGCCTGAAGGAGGCGAAGGCTCGAGTGCGAGAG
CTGAGCCGGCAGCTCGAGAGTGACCCCGGGGCCGAGAACAAGCGGGAGCAGGCCGCAAAAGAGCGAGCAGCGCGGGAGCGACAAGAGCGTTTGACGCGGG
CGCTCGCAGAGCTCGACGAGCTGGAGAAGCAAGACAAGGCCAAGGAGCCCAAGAAGAAGAGCACGAGGTCGAAGAAGCAGACCACGAAGACGAACGAGAA
AAAGAAGGCAAAGAAGAAGGAGCGTCGGGTGAGTACGACGGACCCAGAGGCTCGGGTGATGAAGATGGGAGACGGAGGGTGGCGGCCGTCCTTCAACCTT
CAGTTTGCGCAAGACACCAAGGAGAATTTCATCGTGGGTGTGGGCGTGACGAACGTCGGGAGTGACAAGAGCCAGATGCTTCCGATGTGCGCGCAGGTGC
TCGCGCGTACGGGAGTGCGCCCTCGGGAGTGGCTGGTCGACGGAGGCTTCGTGAAGCTCGCAGCCATCCACGAGATGGAGGCCAAAGGGACGCGAGTCTA
TGCGCCGGTGCCCAAGCCGCGAGACGAGGAGGACGACCCCTACGCCCGCAAGCCCAAGGACACGGATGAGACGTGGCGGTGGCGAAGGCGGATGAAGACC
GAGTCGGCCAAGAGGAAGTACCGGCAGCGAGGGGCACACGCGGAGCTGGTCAACGCGGACCTTCGAGCATGGCGCGGGCTGCAGCAGCTACCGGTCCGAG
GGGAGTCGAAGGTGAGGACGGTGGGGCTGTGGATGGCGCTGACCTACAACCTGCTGAAGTGGACGAAGCTGGTGCCGATGCCGGCATGAGCGGCGGGCGC
TGAGCTGCCTCCCGGGCCTCCGCCGGGGCAGCTGAGCTGCCTCCCGGGCCTCCGCCGGAGCAGCTGCCCATGCTTGGGCAGGAGTATCGGCGGTCAAGGG
AGAGGTCCAAGCCGTGCGTCACTCGCGTCGGCCCGAGTCCGTGCACGACTTCGGGGAAAGACTTACAGCCTC
GCCACCAGCTCGAGTTTCGCTCCTACAACCTCGACTCGCTGTTGGCTGATGACCATCGAGCCCGACTGCTATGGGCAGCGGTCGGGCAGCTCGACCTCTC
GAGCTTCTACGACGCGATCGAAGCCCGAGGAGCGCAGCCAGGACGACCCGCCACGGATCCCAAGGTGTTGCTGACCCTGTGGCTGTACGCGATCTCGGAG
GGCATTGGGAGTGCTCGTCACCTCGCGCGGCTGTGCGAGCGAGACAACGTCTATCGATGGATCTGTGGCGGCTTGAGCATGAACCATCACACGCTGGCGG
AGTTTCGGACGGGGCACGGAGACAAGCTCGACGAGCTGATGACCCAGCTGCTGGCGACGCTGATGCACCAGGGCCTGGTGACGCTGAGGCAGGTCTCCCA
AGACGGCGTCCGTGTACGAGCGAGCGCAGGAGCAGGCTCGTTTCGACGCCGGGCGACCCTCAACAAGTGCCTGAAGGAGGCGAAGGCTCGAGTGCGAGAG
CTGAGCCGGCAGCTCGAGAGTGACCCCGGGGCCGAGAACAAGCGGGAGCAGGCCGCAAAAGAGCGAGCAGCGCGGGAGCGACAAGAGCGTTTGACGCGGG
CGCTCGCAGAGCTCGACGAGCTGGAGAAGCAAGACAAGGCCAAGGAGCCCAAGAAGAAGAGCACGAGGTCGAAGAAGCAGACCACGAAGACGAACGAGAA
AAAGAAGGCAAAGAAGAAGGAGCGTCGGGTGAGTACGACGGACCCAGAGGCTCGGGTGATGAAGATGGGAGACGGAGGGTGGCGGCCGTCCTTCAACCTT
CAGTTTGCGCAAGACACCAAGGAGAATTTCATCGTGGGTGTGGGCGTGACGAACGTCGGGAGTGACAAGAGCCAGATGCTTCCGATGTGCGCGCAGGTGC
TCGCGCGTACGGGAGTGCGCCCTCGGGAGTGGCTGGTCGACGGAGGCTTCGTGAAGCTCGCAGCCATCCACGAGATGGAGGCCAAAGGGACGCGAGTCTA
TGCGCCGGTGCCCAAGCCGCGAGACGAGGAGGACGACCCCTACGCCCGCAAGCCCAAGGACACGGATGAGACGTGGCGGTGGCGAAGGCGGATGAAGACC
GAGTCGGCCAAGAGGAAGTACCGGCAGCGAGGGGCACACGCGGAGCTGGTCAACGCGGACCTTCGAGCATGGCGCGGGCTGCAGCAGCTACCGGTCCGAG
GGGAGTCGAAGGTGAGGACGGTGGGGCTGTGGATGGCGCTGACCTACAACCTGCTGAAGTGGACGAAGCTGGTGCCGATGCCGGCATGAGCGGCGGGCGC
TGAGCTGCCTCCCGGGCCTCCGCCGGGGCAGCTGAGCTGCCTCCCGGGCCTCCGCCGGAGCAGCTGCCCATGCTTGGGCAGGAGTATCGGCGGTCAAGGG
AGAGGTCCAAGCCGTGCGTCACTCGCGTCGGCCCGAGTCCGTGCACGACTTCGGGGAAAGACTTACAGCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1335 bp | 444 aa | 55 | 1389 | + | No |
Chemistry : DDE
ORF sequence :
MPKSRREKPRLREAERHQLEFRSYNLDSLLADDHRARLLWAAVGQLDLSSFYDAIEARGAQPGRPATDPKVLLTLWLYAISEGIGSARHLARLCERDNVY
RWICGGLSMNHHTLAEFRTGHGDKLDELMTQLLATLMHQGLVTLRQVSQDGVRVRASAGAGSFRRRATLNKCLKEAKARVRELSRQLESDPGAENKREQA
AKERAARERQERLTRALAELDELEKQDKAKEPKKKSTRSKKQTTKTNEKKKAKKKERRVSTTDPEARVMKMGDGGWRPSFNLQFAQDTKENFIVGVGVTN
VGSDKSQMLPMCAQVLARTGVRPREWLVDGGFVKLAAIHEMEAKGTRVYAPVPKPRDEEDDPYARKPKDTDETWRWRRRMKTESAKRKYRQRGAHAELVN
ADLRAWRGLQQLPVRGESKVRTVGLWMALTYNLLKWTKLVPMPA
RWICGGLSMNHHTLAEFRTGHGDKLDELMTQLLATLMHQGLVTLRQVSQDGVRVRASAGAGSFRRRATLNKCLKEAKARVRELSRQLESDPGAENKREQA
AKERAARERQERLTRALAELDELEKQDKAKEPKKKSTRSKKQTTKTNEKKKAKKKERRVSTTDPEARVMKMGDGGWRPSFNLQFAQDTKENFIVGVGVTN
VGSDKSQMLPMCAQVLARTGVRPREWLVDGGFVKLAAIHEMEAKGTRVYAPVPKPRDEEDDPYARKPKDTDETWRWRRRMKTESAKRKYRQRGAHAELVN
ADLRAWRGLQQLPVRGESKVRTVGLWMALTYNLLKWTKLVPMPA
Blast result :
Comments
ISPlpa2 is 69% aa similar to ISAde2.
References
1] ISfinder annotation (2016)
2] Shimkets,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.
2] Shimkets,L., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.