ISAte1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
JXYQ01000035 ND Acidovorax temperans
Acidovorax temperans KY4
DNA section
IS Length : 1048 bp

Ends


IR Length : 20

IRL : GGCTTTGTTGCACAAACCAGCCCCATTGCACTGGTAACCTCGGCGCATGA
IRR : GGCTTTGTTGCACAAACCAGAAGCGAGCCGAGATAACCCCAGCCCCAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
CCCCCAAACAGCATAAGCCACAAGGTTACGCCCCGTCAATTGGTGCAGTCGT0

DNA sequence

GGCTTTGTTGCACAAACCAGCCCCATTGCACTGGTAACCTCGGCGCATGAATGAACCCCAAGGGCCTAAGACCCGCTACAAGACCACCAACTGGGCTGCG
TACAACGCCGCACTCAAGGTCAGAGGGGCGCTGACGATCTGGCTGGACAAAGACATGCAGTGGTACGCACCTGCCAGTGGCAAACGGGGTCGCCAGCAGA
CGTTCACGGATGCGGCCATCCAGTTTTGCCTGAGCATCAAGTGCCTGTTTGGCTTGGCACTGCGCCAGAGCCTGGGACTGATTCAGAGCCTGCTGCGTCT
GGCGGGGCTGAATTGGCGGGTTCCCGATTTCAGCACCATCAGTCGCCGTCAGAGGACGCTGCAGGTGCAGCTTCCTTACCAGCGCAGCGCCACAGCGCTG
GATTTGCTGGTGGACAGTACGGGCATCAAGTTCCTGGGTGAAGGGGAATGGAAACGCAAGAAGCACGGAGCCGAATATCGGCGGCAATGGCGCAAGGTGC
ACCTGGGCATTGATGCCCACACGCTGGAGATTCGGGCCATTGAAGTCACAGACAACAGCGTGGGCGATGCTCCCATGCTGCCCGAACTGTTGGCCCAGAT
ACCGCTCGATGAGCCGGTGGCAAGTGTCGGTGGGGATGGAGCCTACGACACAAAGGGGTGCCACGCGGCGATAGCGCAAAGAGGTGCGCAGGCGGTGATT
CCCCCGCGCAAGAATGCAAGGCCTTGGAGACAAACGCTGGAGGGAGCGGGCGGGCGCAACGAAGCCCTGCGAGCTTGCCAAAGGCTGGGGCGCCGTATCT
GGAAGAAGTGGAGCGGTTATCACCGAAGAAGCCTGGTGGAAACCAAGATGCATTGCTTCAAGCGCTTGGGCGAGCGGGTGATGGCGCGAACGTTTGAGCG
CCAGGTCACAGAACTGCATGTGCGGGTGGCTTTGCTCAACCGCTTCACACAACTTGGGCGCCCGGCAACGGTGCCTGTGCCTGCTGTGGCGTAGCTGCGT
CTGGGGCTGGGGTTATCTCGGCTCGCTTCTGGTTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa47994+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNEPQGPKTRYKTTNWAAYNAALKVRGALTIWLDKDMQWYAPASGKRGRQQTFTDAAIQFCLSIKCLFGLALRQSLGLIQSLLRLAGLNWRVPDFSTISR
RQRTLQVQLPYQRSATALDLLVDSTGIKFLGEGEWKRKKHGAEYRRQWRKVHLGIDAHTLEIRAIEVTDNSVGDAPMLPELLAQIPLDEPVASVGGDGAY
DTKGCHAAIAQRGAQAVIPPRKNARPWRQTLEGAGGRNEALRACQRLGRRIWKKWSGYHRRSLVETKMHCFKRLGERVMARTFERQVTELHVRVALLNRF
TQLGRPATVPVPAVA

 

Blast result :
Comments
ISAte1 is 90% aa similar to ISGNB-1.
References
1] ISfinder annotation (2016)
2] Sheng,K.-Y., Chin,P.-S., Chan,K.-G. and Tan,G.S. (2014) Direct submission GenBnak.