ISBhu1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FCNW02000059 | ND | Burkholderia humi | Burkholderia humi LMG 22934 |
DNA section
IS Length : 1131 bp
Ends
IR Length : 17/18
IRL : GGCGTTGTTGCATATATCCGGGCGCGGCGCGGCGGCCTGACGTTTACGCG
IRR : GGCGTTGTTGCATAAGTCGAACGTAAGGACAAGATGGCTTCTGCGATCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGTCATTTCA | TCCTCTGAG | CGGCAGGTGGT | 9 |
DNA sequence
GGCGTTGTTGCATATATCCGGGCGCGGCGCGGCGGCCTGACGTTTACGCGCAACGGTCGGGGGCGGTGCCCCTGTTAACTTTGCGTCGAATTGCGTAGAT
TCTCGATTTTTGCCGAGAAGATGCGCAAGGACGAACACAAGACGCGTGAGCCCAAGGGGAAATACCGTGTCAGGAACTGGACGCAGTACAACGCGGGCTT
GATCGCGAGAGGCGACGTGACGATGTGGATCGAGCAGAGCGTACTGAAAACGACTGAGACGCGGTTGCCCAAACGCGGCCGGCCTTACGCCTACTCGGAC
GCGGTGATTCAGATGCTGCTCGGGCTCAAACAGGTGTACCGCCTTCCGTTGCGAGCGCTTCAGGGCTTCGCGCATAGCCTACGCGAACTCGCATTCGCGG
ACTTGCCGGTGCCCAATTACACGACGCTGAGTCGCCGCGCGCAAGACCTGAAAGTTAGGTTGCCCGCCCTGCGCAGCGGCGAACCGCTGCATCTGGTGGT
CGATAGCACCGGCGTGAAGCTCTACGGCGAAGGCGAATGGAAGGTGCGCAAGCACGGCTATTCGAAGCGCCGCACCTGGCGCAAGGTGCACTTGGGACTG
GACGCGAAGACCGGTCAGGTATGCGCTGCGCTGATGACGCATCAAGACGTCGCCGATGCCGACGTGTTGCCCAAGCTGCTCGATCAGATCTCTGCGGACG
AACCGATCGATACCATCGGCGGCGACGGCGCGTACGACACCAAGCAATGCCACGCGGCGATCGCCGCACGCGATGCTCAACCGTCGATCCCGCCGCGCGA
AGGGGCGATGCCCTGGTCTGAGAACACGCCTGGCGCGAGCTGGCGCAATGAGGCGATTGACGCCATTGCGCGAAGCGGTCGACAGGAATGGAAGAAGCGC
AGCGGCTACCACCGGCGCTCGCTCGTCGAGAACCTGATGTATCGACTCAAGACGCTCACAGGCACTCGTCTATGGGCGCGCTGCATCGGTTCCCAAGCAA
CCGAGGTAGCGATCCGCGTGGGCGTGCTGAACCGCATGACGGCGCTCGCACGCCCGCAGTCCACCCGCATCGCATGAATTCAGGATCGCAGAAGCCATCT
TGTCCTTACGTTCGACTTATGCAACAACGCC
TCTCGATTTTTGCCGAGAAGATGCGCAAGGACGAACACAAGACGCGTGAGCCCAAGGGGAAATACCGTGTCAGGAACTGGACGCAGTACAACGCGGGCTT
GATCGCGAGAGGCGACGTGACGATGTGGATCGAGCAGAGCGTACTGAAAACGACTGAGACGCGGTTGCCCAAACGCGGCCGGCCTTACGCCTACTCGGAC
GCGGTGATTCAGATGCTGCTCGGGCTCAAACAGGTGTACCGCCTTCCGTTGCGAGCGCTTCAGGGCTTCGCGCATAGCCTACGCGAACTCGCATTCGCGG
ACTTGCCGGTGCCCAATTACACGACGCTGAGTCGCCGCGCGCAAGACCTGAAAGTTAGGTTGCCCGCCCTGCGCAGCGGCGAACCGCTGCATCTGGTGGT
CGATAGCACCGGCGTGAAGCTCTACGGCGAAGGCGAATGGAAGGTGCGCAAGCACGGCTATTCGAAGCGCCGCACCTGGCGCAAGGTGCACTTGGGACTG
GACGCGAAGACCGGTCAGGTATGCGCTGCGCTGATGACGCATCAAGACGTCGCCGATGCCGACGTGTTGCCCAAGCTGCTCGATCAGATCTCTGCGGACG
AACCGATCGATACCATCGGCGGCGACGGCGCGTACGACACCAAGCAATGCCACGCGGCGATCGCCGCACGCGATGCTCAACCGTCGATCCCGCCGCGCGA
AGGGGCGATGCCCTGGTCTGAGAACACGCCTGGCGCGAGCTGGCGCAATGAGGCGATTGACGCCATTGCGCGAAGCGGTCGACAGGAATGGAAGAAGCGC
AGCGGCTACCACCGGCGCTCGCTCGTCGAGAACCTGATGTATCGACTCAAGACGCTCACAGGCACTCGTCTATGGGCGCGCTGCATCGGTTCCCAAGCAA
CCGAGGTAGCGATCCGCGTGGGCGTGCTGAACCGCATGACGGCGCTCGCACGCCCGCAGTCCACCCGCATCGCATGAATTCAGGATCGCAGAAGCCATCT
TGTCCTTACGTTCGACTTATGCAACAACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
957 bp | 318 aa | 121 | 1077 | + | No |
Chemistry : DDE
ORF sequence :
MRKDEHKTREPKGKYRVRNWTQYNAGLIARGDVTMWIEQSVLKTTETRLPKRGRPYAYSDAVIQMLLGLKQVYRLPLRALQGFAHSLRELAFADLPVPNY
TTLSRRAQDLKVRLPALRSGEPLHLVVDSTGVKLYGEGEWKVRKHGYSKRRTWRKVHLGLDAKTGQVCAALMTHQDVADADVLPKLLDQISADEPIDTIG
GDGAYDTKQCHAAIAARDAQPSIPPREGAMPWSENTPGASWRNEAIDAIARSGRQEWKKRSGYHRRSLVENLMYRLKTLTGTRLWARCIGSQATEVAIRV
GVLNRMTALARPQSTRIA
TTLSRRAQDLKVRLPALRSGEPLHLVVDSTGVKLYGEGEWKVRKHGYSKRRTWRKVHLGLDAKTGQVCAALMTHQDVADADVLPKLLDQISADEPIDTIG
GDGAYDTKQCHAAIAARDAQPSIPPREGAMPWSENTPGASWRNEAIDAIARSGRQEWKKRSGYHRRSLVENLMYRLKTLTGTRLWARCIGSQATEVAIRV
GVLNRMTALARPQSTRIA
Blast result :
Comments
ISBhu1 is 84% aa similar to ISRta5.
References
1] ISfinder annotation (2016)
2] Peeters,Charlotte. (2016) Direct submission GenBank.
2] Peeters,Charlotte. (2016) Direct submission GenBank.