ISBhu1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FCNW02000059 ND Burkholderia humi
Burkholderia humi LMG 22934
DNA section
IS Length : 1131 bp

Ends


IR Length : 17/18

IRL : GGCGTTGTTGCATATATCCGGGCGCGGCGCGGCGGCCTGACGTTTACGCG
IRR : GGCGTTGTTGCATAAGTCGAACGTAAGGACAAGATGGCTTCTGCGATCCT

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTCATTTCATCCTCTGAGCGGCAGGTGGT9

DNA sequence

GGCGTTGTTGCATATATCCGGGCGCGGCGCGGCGGCCTGACGTTTACGCGCAACGGTCGGGGGCGGTGCCCCTGTTAACTTTGCGTCGAATTGCGTAGAT
TCTCGATTTTTGCCGAGAAGATGCGCAAGGACGAACACAAGACGCGTGAGCCCAAGGGGAAATACCGTGTCAGGAACTGGACGCAGTACAACGCGGGCTT
GATCGCGAGAGGCGACGTGACGATGTGGATCGAGCAGAGCGTACTGAAAACGACTGAGACGCGGTTGCCCAAACGCGGCCGGCCTTACGCCTACTCGGAC
GCGGTGATTCAGATGCTGCTCGGGCTCAAACAGGTGTACCGCCTTCCGTTGCGAGCGCTTCAGGGCTTCGCGCATAGCCTACGCGAACTCGCATTCGCGG
ACTTGCCGGTGCCCAATTACACGACGCTGAGTCGCCGCGCGCAAGACCTGAAAGTTAGGTTGCCCGCCCTGCGCAGCGGCGAACCGCTGCATCTGGTGGT
CGATAGCACCGGCGTGAAGCTCTACGGCGAAGGCGAATGGAAGGTGCGCAAGCACGGCTATTCGAAGCGCCGCACCTGGCGCAAGGTGCACTTGGGACTG
GACGCGAAGACCGGTCAGGTATGCGCTGCGCTGATGACGCATCAAGACGTCGCCGATGCCGACGTGTTGCCCAAGCTGCTCGATCAGATCTCTGCGGACG
AACCGATCGATACCATCGGCGGCGACGGCGCGTACGACACCAAGCAATGCCACGCGGCGATCGCCGCACGCGATGCTCAACCGTCGATCCCGCCGCGCGA
AGGGGCGATGCCCTGGTCTGAGAACACGCCTGGCGCGAGCTGGCGCAATGAGGCGATTGACGCCATTGCGCGAAGCGGTCGACAGGAATGGAAGAAGCGC
AGCGGCTACCACCGGCGCTCGCTCGTCGAGAACCTGATGTATCGACTCAAGACGCTCACAGGCACTCGTCTATGGGCGCGCTGCATCGGTTCCCAAGCAA
CCGAGGTAGCGATCCGCGTGGGCGTGCTGAACCGCATGACGGCGCTCGCACGCCCGCAGTCCACCCGCATCGCATGAATTCAGGATCGCAGAAGCCATCT
TGTCCTTACGTTCGACTTATGCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
957 bp318 aa1211077+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKDEHKTREPKGKYRVRNWTQYNAGLIARGDVTMWIEQSVLKTTETRLPKRGRPYAYSDAVIQMLLGLKQVYRLPLRALQGFAHSLRELAFADLPVPNY
TTLSRRAQDLKVRLPALRSGEPLHLVVDSTGVKLYGEGEWKVRKHGYSKRRTWRKVHLGLDAKTGQVCAALMTHQDVADADVLPKLLDQISADEPIDTIG
GDGAYDTKQCHAAIAARDAQPSIPPREGAMPWSENTPGASWRNEAIDAIARSGRQEWKKRSGYHRRSLVENLMYRLKTLTGTRLWARCIGSQATEVAIRV
GVLNRMTALARPQSTRIA

 

Blast result :
Comments
ISBhu1 is 84% aa similar to ISRta5.
References
1] ISfinder annotation (2016)
2] Peeters,Charlotte. (2016) Direct submission GenBank.