ISMte1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP010070 | ND | Methanoplasma termitum | Methanoplasma termitum MpT1 Candidatus Methanoplasma termitum MpT1 |
DNA section
IS Length : 1020 bp
Ends
IR Length : 18
IRL : AACTGTGTTTCATAATTCGTTGGCCCGCTGACCGATGGTGATTAATTTTC
IRR : AACTGTGTTTCATAATTCATTCACATACCTGCCGCCTTCATCATATTAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAATTGCGCCCCGGGA | CCTGCACCA ATAATCTA | 0 | |
TAAGGGCC CCTGCACCA | ACCTGAAGATATCTTGC | 0 | |
ATGATCAT | CAGAAAAGG | CAAAATAT | 9 |
ACAGCTTTT | ATAATAGG | CATCTTTTT | 8 |
DNA sequence
AACTGTGTTTCATAATTCGTTGGCCCGCTGACCGATGGTGATTAATTTTCAGAGGACCATCGTCCGGTGCTTGTGAGAAAGCAGGAGCCAGACGATGGCA
GAGATGGGATGGGACAGACAGTATAATAGACATTGGGATGAGTATAACCAAAGACTTGTCGAACGGGGAAGGATATTTTGGGACCTTTCATGGGTCCCTA
AGCATCTGGATGAGATAGGTTCGAATGAAAAGAAACGAGGACGGCCGCGTTTGTACGGGGATGCTCTGATATCTTATGTTTCCAGGGTCAGGACGGTCAC
GGGCATCCCCTTCAGGATGCTGGAGGGTCTTTTCAAGCCCGTGTTCGATCTGATCGGGATAGAGGTGCCGAGCTATCCGACGCTTTGGAGGCGCTGTACC
TCTCTGGAAGCGGCAGCCGGTATCAAGGCGACCGCGCGCAAGAGGATCGTTGCGGTCGACAGTACAGGGATAAAGGTCACCGTCAGGGGAGGATGGATGA
GGGAGAAGTGGAAGGTGCACAAAGGATGGCTTAAACTTCACATTCTCTCTGATGTGGAGACGAACGAGATCCTCGCATTCGTGGCGACGGACGAACGATC
AAGCGATGCCAAGCACCTGCTGGCACTTGTGGATGCGGCCTTGGCCGCAGGCCACGGGATAGCGAAGGTGCTTGCGGACGGGGCGTATGACACGAGGAAG
AACTGGAATGGGATGAGGGAGAGGAAGATAGAGTTCATAGCCCACATCAGGAAGAATGCTTCGACGACATCCAGAGGATGCACCGTGAGAAGCGCGCATG
TACGGGAGAGGAACGCAATAGGCGAGGACGAGTGGCGTAAGAGGTACGGCTATAACATGAGATGGAAAGTGGAATCGGTCTTCTCCGACCTCAAGAGGAT
GTTCGGAGAATCCGTTTCTTCGAAGACGTTCGAGAACATGGTGGCGGAGATCTCCAGGAGCATCGAGTGCTTTAATATGATGAAGGCGGCAGGTATGTGA
ATGAATTATGAAACACAGTT
GAGATGGGATGGGACAGACAGTATAATAGACATTGGGATGAGTATAACCAAAGACTTGTCGAACGGGGAAGGATATTTTGGGACCTTTCATGGGTCCCTA
AGCATCTGGATGAGATAGGTTCGAATGAAAAGAAACGAGGACGGCCGCGTTTGTACGGGGATGCTCTGATATCTTATGTTTCCAGGGTCAGGACGGTCAC
GGGCATCCCCTTCAGGATGCTGGAGGGTCTTTTCAAGCCCGTGTTCGATCTGATCGGGATAGAGGTGCCGAGCTATCCGACGCTTTGGAGGCGCTGTACC
TCTCTGGAAGCGGCAGCCGGTATCAAGGCGACCGCGCGCAAGAGGATCGTTGCGGTCGACAGTACAGGGATAAAGGTCACCGTCAGGGGAGGATGGATGA
GGGAGAAGTGGAAGGTGCACAAAGGATGGCTTAAACTTCACATTCTCTCTGATGTGGAGACGAACGAGATCCTCGCATTCGTGGCGACGGACGAACGATC
AAGCGATGCCAAGCACCTGCTGGCACTTGTGGATGCGGCCTTGGCCGCAGGCCACGGGATAGCGAAGGTGCTTGCGGACGGGGCGTATGACACGAGGAAG
AACTGGAATGGGATGAGGGAGAGGAAGATAGAGTTCATAGCCCACATCAGGAAGAATGCTTCGACGACATCCAGAGGATGCACCGTGAGAAGCGCGCATG
TACGGGAGAGGAACGCAATAGGCGAGGACGAGTGGCGTAAGAGGTACGGCTATAACATGAGATGGAAAGTGGAATCGGTCTTCTCCGACCTCAAGAGGAT
GTTCGGAGAATCCGTTTCTTCGAAGACGTTCGAGAACATGGTGGCGGAGATCTCCAGGAGCATCGAGTGCTTTAATATGATGAAGGCGGCAGGTATGTGA
ATGAATTATGAAACACAGTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
906 bp | 301 aa | 95 | 1000 | + | No |
Chemistry : DDE
ORF sequence :
MAEMGWDRQYNRHWDEYNQRLVERGRIFWDLSWVPKHLDEIGSNEKKRGRPRLYGDALISYVSRVRTVTGIPFRMLEGLFKPVFDLIGIEVPSYPTLWRR
CTSLEAAAGIKATARKRIVAVDSTGIKVTVRGGWMREKWKVHKGWLKLHILSDVETNEILAFVATDERSSDAKHLLALVDAALAAGHGIAKVLADGAYDT
RKNWNGMRERKIEFIAHIRKNASTTSRGCTVRSAHVRERNAIGEDEWRKRYGYNMRWKVESVFSDLKRMFGESVSSKTFENMVAEISRSIECFNMMKAAG
M
CTSLEAAAGIKATARKRIVAVDSTGIKVTVRGGWMREKWKVHKGWLKLHILSDVETNEILAFVATDERSSDAKHLLALVDAALAAGHGIAKVLADGAYDT
RKNWNGMRERKIEFIAHIRKNASTTSRGCTVRSAHVRERNAIGEDEWRKRYGYNMRWKVESVFSDLKRMFGESVSSKTFENMVAEISRSIECFNMMKAAG
M
Blast result :
Comments
ISMte1 is 58% aa similar to ISMeco1.
References
1] ISfinder annotation (2016)
2] Lang,K., Schuldes,J., Klingl,A., Poehlein,A., Daniel,R. and Brune,A. (2015) Appl Environ Microbiol. Feb;81(4):1338-52.
2] Lang,K., Schuldes,J., Klingl,A., Poehlein,A., Daniel,R. and Brune,A. (2015) Appl Environ Microbiol. Feb;81(4):1338-52.