ISMte1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP010070 ND Methanoplasma termitum
Methanoplasma termitum MpT1
Candidatus Methanoplasma termitum MpT1
DNA section
IS Length : 1020 bp

Ends


IR Length : 18

IRL : AACTGTGTTTCATAATTCGTTGGCCCGCTGACCGATGGTGATTAATTTTC
IRR : AACTGTGTTTCATAATTCATTCACATACCTGCCGCCTTCATCATATTAAA

Insertion site


Left flankDirect repeatRight flankDR Length
TAAATTGCGCCCCGGGACCTGCACCA ATAATCTA0
TAAGGGCC CCTGCACCAACCTGAAGATATCTTGC0
ATGATCATCAGAAAAGGCAAAATAT9
ACAGCTTTTATAATAGGCATCTTTTT8

DNA sequence

AACTGTGTTTCATAATTCGTTGGCCCGCTGACCGATGGTGATTAATTTTCAGAGGACCATCGTCCGGTGCTTGTGAGAAAGCAGGAGCCAGACGATGGCA
GAGATGGGATGGGACAGACAGTATAATAGACATTGGGATGAGTATAACCAAAGACTTGTCGAACGGGGAAGGATATTTTGGGACCTTTCATGGGTCCCTA
AGCATCTGGATGAGATAGGTTCGAATGAAAAGAAACGAGGACGGCCGCGTTTGTACGGGGATGCTCTGATATCTTATGTTTCCAGGGTCAGGACGGTCAC
GGGCATCCCCTTCAGGATGCTGGAGGGTCTTTTCAAGCCCGTGTTCGATCTGATCGGGATAGAGGTGCCGAGCTATCCGACGCTTTGGAGGCGCTGTACC
TCTCTGGAAGCGGCAGCCGGTATCAAGGCGACCGCGCGCAAGAGGATCGTTGCGGTCGACAGTACAGGGATAAAGGTCACCGTCAGGGGAGGATGGATGA
GGGAGAAGTGGAAGGTGCACAAAGGATGGCTTAAACTTCACATTCTCTCTGATGTGGAGACGAACGAGATCCTCGCATTCGTGGCGACGGACGAACGATC
AAGCGATGCCAAGCACCTGCTGGCACTTGTGGATGCGGCCTTGGCCGCAGGCCACGGGATAGCGAAGGTGCTTGCGGACGGGGCGTATGACACGAGGAAG
AACTGGAATGGGATGAGGGAGAGGAAGATAGAGTTCATAGCCCACATCAGGAAGAATGCTTCGACGACATCCAGAGGATGCACCGTGAGAAGCGCGCATG
TACGGGAGAGGAACGCAATAGGCGAGGACGAGTGGCGTAAGAGGTACGGCTATAACATGAGATGGAAAGTGGAATCGGTCTTCTCCGACCTCAAGAGGAT
GTTCGGAGAATCCGTTTCTTCGAAGACGTTCGAGAACATGGTGGCGGAGATCTCCAGGAGCATCGAGTGCTTTAATATGATGAAGGCGGCAGGTATGTGA
ATGAATTATGAAACACAGTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
906 bp301 aa951000+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAEMGWDRQYNRHWDEYNQRLVERGRIFWDLSWVPKHLDEIGSNEKKRGRPRLYGDALISYVSRVRTVTGIPFRMLEGLFKPVFDLIGIEVPSYPTLWRR
CTSLEAAAGIKATARKRIVAVDSTGIKVTVRGGWMREKWKVHKGWLKLHILSDVETNEILAFVATDERSSDAKHLLALVDAALAAGHGIAKVLADGAYDT
RKNWNGMRERKIEFIAHIRKNASTTSRGCTVRSAHVRERNAIGEDEWRKRYGYNMRWKVESVFSDLKRMFGESVSSKTFENMVAEISRSIECFNMMKAAG
M

 

Blast result :
Comments
ISMte1 is 58% aa similar to ISMeco1.
References
1] ISfinder annotation (2016)
2] Lang,K., Schuldes,J., Klingl,A., Poehlein,A., Daniel,R. and Brune,A. (2015) Appl Environ Microbiol. Feb;81(4):1338-52.