ISfinder Mirror Site

ISArve1

Family IS5
Group IS903

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
CP002588	ND	Archaeoglobus veneficus	Archaeoglobus veneficus SNP6

DNA section

IS Length : 995 bp

Ends

IR Length : 14/17

IRL : TGCTTTGTCGAACAAACAAGCATAGAATAATACACAATAAAAATTAAATT
IRR : TGCCTTGTCGAATAATCCCCAACTAAACTTCCCCATCCACTCCAACAACT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TATGTCTGTC	GAAGGATC	AAGCTTATTA	8
AGTGGGAGAA	GCATCGAT	GAACTCGATT	8
AGAAGTACGG	CTTCGTAC	CTTCGTACCG	8

DNA sequence

TGCTTTGTCGAACAAACAAGCATAGAATAATACACAATAAAAATTAAATTCCAATAAAACCTTTAACCAACCCATGCCAAAAATAAACTGGAAAGAATAC
AATGAAAAGCTTGTAAAGAGAGGTGAAATTTTATTCAGTACGGAGTTTATAGAGAACTGGAAGAGAGAGCTCGATTCAATGAACGAAAGAAAGAGAGGTC
ATCCTTACGAGTATCCTAATTCTTTCATGCAGTTTTTAGCATCAATCCGCTACTACTGCCATCTCGACTACAGAACTCTGGAAGGATTCTGCAGAAGCTT
ATCAAGAATTCTCGATATACCAGCTCCAGATCATTCAACTATCCACAAGAGAGCTCCAAGGTTGGATTTCACTCCTCCAGCCGTTAACTCTGAAGAAATA
GTTATAGCGGTTGATTCTTCGGGAATTAAAGTTCATAACAGGGGAGAGTGGATGAGAGAGAAATACAGGAGGAGAAGGGGATGGATAAAGATCCATTTCG
CTGTTGACGTTGAAACTAAGCAGGTTGTAGCTTACGAAGTTACAGACGAGCAGGTTCACGATAACAAGGTCTTCAAGGATCTCGTAGAAAAATCTGAAGA
AAGAGCAAAGGTAAGGAGAGTTCTTGCCGATAAAGCGTATGACAGCTACGAAAACTTCGAATTTCTTCAATCAAGGGATATAGATCCTGCCATTCCAGTA
AGGAAAGGAGCTATAGACATCTTAAAGCATCCAAGAAGTGAGGAGGCAAGGAAGCAGAAAGATTTTGACGGGTGGAAGGAAGAGAAGAAATACGGGTTGA
GGTGGGCAGTTGAGACTGCTTATTCTGTCTTTAAGAGGTGTTTTGGTGAGTTCGTTTCAGCAAGGAAGCAGGATTACATGGTTAAGGAGATTGCAGCGAA
GGTGTGGATATACAATTCGCTGAGGGCTGTTCTCTGCTGAAGGGGAGTTGTTGGAGTGGATGGGGAAGTTTAGTTGGGGATTATTCGACAAGGCA

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
867 bp	288 aa	74	940	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKINWKEYNEKLVKRGEILFSTEFIENWKRELDSMNERKRGHPYEYPNSFMQFLASIRYYCHLDYRTLEGFCRSLSRILDIPAPDHSTIHKRAPRLDFT
PPAVNSEEIVIAVDSSGIKVHNRGEWMREKYRRRRGWIKIHFAVDVETKQVVAYEVTDEQVHDNKVFKDLVEKSEERAKVRRVLADKAYDSYENFEFLQS
RDIDPAIPVRKGAIDILKHPRSEEARKQKDFDGWKEEKKYGLRWAVETAYSVFKRCFGEFVSARKQDYMVKEIAAKVWIYNSLRAVLC

Blast result :

Comments

ISArve1 is 61% aa similar to ISMth3.

References

1] ISfinder annotation (2016)
2] Lucas,S., Copeland,A., Lapidus,A., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Pagani,I., Ivanova,N., Mikhailova,N., Lu,M., Detter,J.C., Tapia,R., Han,C., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Spring,S., Brambilla,E., Klenk,H.-P. and Eisen,J.A. (2011) Direct submission GenBank.