ISArch25

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LHYB01000062 ND Uncultured archeon
Uncultured archeon
Candidate divison MSBL1 archaeon SCGC-AAA261O19
DNA section
IS Length : 1034 bp

Ends


IR Length : 15/17

IRL : TGCTTTGTTGAATAACTATTTATTGGCTTCGCTCTGATAGGTTCAACTGC
IRR : TGCTGTGTTGAATAATTCAAGCTTTGCGGTTTTATGACTATTGCTTTCCT

Insertion site


Left flankDirect repeatRight flankDR Length
AGGATATTGGC CTCACCAGACTCAACACA GCACTACCAGA0

DNA sequence

TGCTTTGTTGAATAACTATTTATTGGCTTCGCTCTGATAGGTTCAACTGCTGTTGAAGGCTGGCTACCGAGGAGGTGTGGTGTGAAAAACCAGCTGAGGT
GGTCAGTATGACTAGAAATTGGAGGGAATATAATGGGAAACTCGTCAAGCGCGGCGAGTTTTACCTGAGTCCCGACTTTCTGGACTCTTGGGACGAGGAA
TTGGAAGAAATGAACAGGGGTAAGATCGGCCGGCCTTACGAGTTTCCGGAGAGCTTTGTTCAATTCGCAGCCTTGTGGTACGAGTTCTTTCACCTGCCAT
ATCGGCAGCTTGAGGGGGTTTTGCGGAAACTCGGTTCTCTATTCCCTGAACTCAAAGCCTCTGACTATAGCACTCTCTGGCACAGGTTCAAAGACCTAAA
AATCGAGGTTCCGAAATCCAACGTTATAATCGTTGCAGTAGACAGCACGGGGATTAAAGTCACGAATCGAGGCGAATGGATGCGCAAAACCCATCGAGGC
GAGCGAGGAGGATGGATTAAGGTCCACGTCGCCGTGGACGTGGAGAGTAAGGAAATTCTATCGATTGAAGTGACGGACGAGAAGACTGGAGACTCAGAGG
TTTTCGAAGACCTCGTCGAGGATCTGGATCCAAAGGATTGTTTGGGGGACGGAGGTTACGACAGTGAGAAGGTATTCAAAATCTTGGAGAAGAAAGGCGT
TGGCTCGCCAGGAATCAAGATTCGGAAGAATGCTAGGACTGGCCTCTCGCCGAGAGGGCAAGCCGCCAAAGAATTCCAAGAACTAGGACATGAAGAGTGG
AAGAAGAAGCATGAGTACGGCAAAAGGTGGGCGGTCGAGGGATTCTTCTCGGCTGTCAAGCGGTGTTTCGGCGAAACGGTAAGGGCAGCAAGCCCAGCGG
GAATGGTGAGGGAAGTGAAGAGGAAATTTGGACTATACAACTTGGTCACAAAAATCTGAAGCGAGAAAACCACCGCCACCGAAAAGGAAAGCAATAGTCA
TAAAACCGCAAAGCTTGAATTATTCAACACAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
852 bp283 aa108959+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTRNWREYNGKLVKRGEFYLSPDFLDSWDEELEEMNRGKIGRPYEFPESFVQFAALWYEFFHLPYRQLEGVLRKLGSLFPELKASDYSTLWHRFKDLKIE
VPKSNVIIVAVDSTGIKVTNRGEWMRKTHRGERGGWIKVHVAVDVESKEILSIEVTDEKTGDSEVFEDLVEDLDPKDCLGDGGYDSEKVFKILEKKGVGS
PGIKIRKNARTGLSPRGQAAKEFQELGHEEWKKKHEYGKRWAVEGFFSAVKRCFGETVRAASPAGMVREVKRKFGLYNLVTKI

 

Blast result :
Comments
ISArch25 is 71% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Mwirichia,R., Alam,I., Rashid,M., Vinu,M., Ba-Alawi,W., Anthony Kamau,A., Kamanda Ngugi,D., Goker,M., Klenk,H.P., Bajic,V. and Stingl,U. (2016) Sci Rep 6, 19181.