ISArch25
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LHYB01000062 | ND | Uncultured archeon | Uncultured archeon Candidate divison MSBL1 archaeon SCGC-AAA261O19 |
DNA section
IS Length : 1034 bp
Ends
IR Length : 15/17
IRL : TGCTTTGTTGAATAACTATTTATTGGCTTCGCTCTGATAGGTTCAACTGC
IRR : TGCTGTGTTGAATAATTCAAGCTTTGCGGTTTTATGACTATTGCTTTCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGATATTGGC CTCACCAGA | CTCAACACA GCACTACCAGA | 0 |
DNA sequence
TGCTTTGTTGAATAACTATTTATTGGCTTCGCTCTGATAGGTTCAACTGCTGTTGAAGGCTGGCTACCGAGGAGGTGTGGTGTGAAAAACCAGCTGAGGT
GGTCAGTATGACTAGAAATTGGAGGGAATATAATGGGAAACTCGTCAAGCGCGGCGAGTTTTACCTGAGTCCCGACTTTCTGGACTCTTGGGACGAGGAA
TTGGAAGAAATGAACAGGGGTAAGATCGGCCGGCCTTACGAGTTTCCGGAGAGCTTTGTTCAATTCGCAGCCTTGTGGTACGAGTTCTTTCACCTGCCAT
ATCGGCAGCTTGAGGGGGTTTTGCGGAAACTCGGTTCTCTATTCCCTGAACTCAAAGCCTCTGACTATAGCACTCTCTGGCACAGGTTCAAAGACCTAAA
AATCGAGGTTCCGAAATCCAACGTTATAATCGTTGCAGTAGACAGCACGGGGATTAAAGTCACGAATCGAGGCGAATGGATGCGCAAAACCCATCGAGGC
GAGCGAGGAGGATGGATTAAGGTCCACGTCGCCGTGGACGTGGAGAGTAAGGAAATTCTATCGATTGAAGTGACGGACGAGAAGACTGGAGACTCAGAGG
TTTTCGAAGACCTCGTCGAGGATCTGGATCCAAAGGATTGTTTGGGGGACGGAGGTTACGACAGTGAGAAGGTATTCAAAATCTTGGAGAAGAAAGGCGT
TGGCTCGCCAGGAATCAAGATTCGGAAGAATGCTAGGACTGGCCTCTCGCCGAGAGGGCAAGCCGCCAAAGAATTCCAAGAACTAGGACATGAAGAGTGG
AAGAAGAAGCATGAGTACGGCAAAAGGTGGGCGGTCGAGGGATTCTTCTCGGCTGTCAAGCGGTGTTTCGGCGAAACGGTAAGGGCAGCAAGCCCAGCGG
GAATGGTGAGGGAAGTGAAGAGGAAATTTGGACTATACAACTTGGTCACAAAAATCTGAAGCGAGAAAACCACCGCCACCGAAAAGGAAAGCAATAGTCA
TAAAACCGCAAAGCTTGAATTATTCAACACAGCA
GGTCAGTATGACTAGAAATTGGAGGGAATATAATGGGAAACTCGTCAAGCGCGGCGAGTTTTACCTGAGTCCCGACTTTCTGGACTCTTGGGACGAGGAA
TTGGAAGAAATGAACAGGGGTAAGATCGGCCGGCCTTACGAGTTTCCGGAGAGCTTTGTTCAATTCGCAGCCTTGTGGTACGAGTTCTTTCACCTGCCAT
ATCGGCAGCTTGAGGGGGTTTTGCGGAAACTCGGTTCTCTATTCCCTGAACTCAAAGCCTCTGACTATAGCACTCTCTGGCACAGGTTCAAAGACCTAAA
AATCGAGGTTCCGAAATCCAACGTTATAATCGTTGCAGTAGACAGCACGGGGATTAAAGTCACGAATCGAGGCGAATGGATGCGCAAAACCCATCGAGGC
GAGCGAGGAGGATGGATTAAGGTCCACGTCGCCGTGGACGTGGAGAGTAAGGAAATTCTATCGATTGAAGTGACGGACGAGAAGACTGGAGACTCAGAGG
TTTTCGAAGACCTCGTCGAGGATCTGGATCCAAAGGATTGTTTGGGGGACGGAGGTTACGACAGTGAGAAGGTATTCAAAATCTTGGAGAAGAAAGGCGT
TGGCTCGCCAGGAATCAAGATTCGGAAGAATGCTAGGACTGGCCTCTCGCCGAGAGGGCAAGCCGCCAAAGAATTCCAAGAACTAGGACATGAAGAGTGG
AAGAAGAAGCATGAGTACGGCAAAAGGTGGGCGGTCGAGGGATTCTTCTCGGCTGTCAAGCGGTGTTTCGGCGAAACGGTAAGGGCAGCAAGCCCAGCGG
GAATGGTGAGGGAAGTGAAGAGGAAATTTGGACTATACAACTTGGTCACAAAAATCTGAAGCGAGAAAACCACCGCCACCGAAAAGGAAAGCAATAGTCA
TAAAACCGCAAAGCTTGAATTATTCAACACAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
852 bp | 283 aa | 108 | 959 | + | No |
Chemistry : DDE
ORF sequence :
MTRNWREYNGKLVKRGEFYLSPDFLDSWDEELEEMNRGKIGRPYEFPESFVQFAALWYEFFHLPYRQLEGVLRKLGSLFPELKASDYSTLWHRFKDLKIE
VPKSNVIIVAVDSTGIKVTNRGEWMRKTHRGERGGWIKVHVAVDVESKEILSIEVTDEKTGDSEVFEDLVEDLDPKDCLGDGGYDSEKVFKILEKKGVGS
PGIKIRKNARTGLSPRGQAAKEFQELGHEEWKKKHEYGKRWAVEGFFSAVKRCFGETVRAASPAGMVREVKRKFGLYNLVTKI
VPKSNVIIVAVDSTGIKVTNRGEWMRKTHRGERGGWIKVHVAVDVESKEILSIEVTDEKTGDSEVFEDLVEDLDPKDCLGDGGYDSEKVFKILEKKGVGS
PGIKIRKNARTGLSPRGQAAKEFQELGHEEWKKKHEYGKRWAVEGFFSAVKRCFGETVRAASPAGMVREVKRKFGLYNLVTKI
Blast result :
Comments
ISArch25 is 71% aa similar to ISMth3.
References
1] ISfinder annotation (2016)
2] Mwirichia,R., Alam,I., Rashid,M., Vinu,M., Ba-Alawi,W., Anthony Kamau,A., Kamanda Ngugi,D., Goker,M., Klenk,H.P., Bajic,V. and Stingl,U. (2016) Sci Rep 6, 19181.
2] Mwirichia,R., Alam,I., Rashid,M., Vinu,M., Ba-Alawi,W., Anthony Kamau,A., Kamanda Ngugi,D., Goker,M., Klenk,H.P., Bajic,V. and Stingl,U. (2016) Sci Rep 6, 19181.