ISFesp1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ATDU01000028 | ND | Ferroplasma sp. | Ferroplasma sp. Type II |
DNA section
IS Length : 1433 bp
Ends
IR Length : 18/19
IRL : TGCTGTGTTGAATAAATATTTAAACCGCTTGTAGTTCGAAGCAGTATTTC
IRR : TGCTCTGTTGAACAAATATCCAGATTTCCGCTCTTTTCACTCTTCCTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTATAATAT | TCCTATTGG | GAAAGTATTA | 9 |
DNA sequence
TGCTGTGTTGAATAAATATTTAAACCGCTTGTAGTTCGAAGCAGTATTTCCCCTACACTTCCAGTTCCTTCTTCTCGTGATCTGTTATTTCAACATCCCA
GTGGTGTACTTCCGCCCTGTTATTCTTCAGGAATTCAACAATAGCTTCACTTGCATCTGTTCTGGTAACAATAACACCATTGGCATACTTCACATATTTA
TAATTGTCAAGGAATCCTGGTATCCGTTTATGGTACCTGCCATAGTGTGAGGAGTTATTATAACCGTAAAGTTTCCTGTAAAATTTAGAGTAAGAAGCGG
GGCTGACTCCATTCTTTGACCGGGGTATCGTGAAAACAATCAGTGTGCCCTTCATATGGGGATTAATCCAAATTCCGATATAAATATATGGCAGTATGCA
CATACAGTTATAATGCCGAGATGGGGAAAGACTTACAGGGACAAAAGAAACTGGAAGGAATACAATGAGGAACTCGTAATAAGGGGGAAATTCTTCTTTG
ATTTTGATTTCGTGGATCAGTGGGACTCTGAACTTGAGAAAATGAATCTTGGCAAAAGGGGATCACCATTCCTCTTCCCGGAATCGTTCATGCAGTTCAT
GATGATATGGCACCAGTATCTGGATTACCGTGGCCTCGAGGGAATGGCAAGATCACTTGTTAATCTTGGGATAATACCAGAATATGGTGATTATACCACC
ATATGGCACCGCATACATGATAAGATTCCTGACCTTGATATTTCGGGCATACAGTATGCAGAACTCGGTACCGATGGCACTGGAATGAAGACAAACAATG
CAGGTTCTTACAGGATAATGAAATATGGAGATCCAGATGCAAGGCAGAGAAAGCATCTTGTTGTTATAATAACAGCAGATGTGAAGACAAAGAAGATCAT
AGGGATAGAATCACACATAGAGGGTACTGGACCATCTGAACCAGAAACTGCATCCAGGCACATAAAAGAAGCAGTGAAGAGGGGAGTAAATATAAAAACA
TTCTACGGTGATGGTGCATTCGATGTGAACAATCTCTTCAACCTTACACATTCCATCGGTGCCATACCGGTGATCAAGATCAGGAAGAATGCCTCCACTG
ACAGGCAAAGGGGATCAAAACACAGAAGAAAGGAGGTAAGGGAATACAGGGAGAAAGGTTACAAACAGTGGGCAGAAGAGAAACATTACGGAATGAGGTG
GCCTGGGACTGAAGGAATATTCTCCGCTGTAAAGAGGAAGTTTGGAGAGAACTGTGTAAGCAGGTCTACAGAAGGATTGAAAGCAGAGGGATACCAGAGG
CTCTGGGATATATGACTATATAAACCAGAGGGCAAAGATGGAGGTAAAGTGCATGAATTAGGGGCTGAAAAGAAGAATAAAATCAGAGGAAGAGTGAAAA
GAGCGGAAATCTGGATATTTGTTCAACAGAGCA
GTGGTGTACTTCCGCCCTGTTATTCTTCAGGAATTCAACAATAGCTTCACTTGCATCTGTTCTGGTAACAATAACACCATTGGCATACTTCACATATTTA
TAATTGTCAAGGAATCCTGGTATCCGTTTATGGTACCTGCCATAGTGTGAGGAGTTATTATAACCGTAAAGTTTCCTGTAAAATTTAGAGTAAGAAGCGG
GGCTGACTCCATTCTTTGACCGGGGTATCGTGAAAACAATCAGTGTGCCCTTCATATGGGGATTAATCCAAATTCCGATATAAATATATGGCAGTATGCA
CATACAGTTATAATGCCGAGATGGGGAAAGACTTACAGGGACAAAAGAAACTGGAAGGAATACAATGAGGAACTCGTAATAAGGGGGAAATTCTTCTTTG
ATTTTGATTTCGTGGATCAGTGGGACTCTGAACTTGAGAAAATGAATCTTGGCAAAAGGGGATCACCATTCCTCTTCCCGGAATCGTTCATGCAGTTCAT
GATGATATGGCACCAGTATCTGGATTACCGTGGCCTCGAGGGAATGGCAAGATCACTTGTTAATCTTGGGATAATACCAGAATATGGTGATTATACCACC
ATATGGCACCGCATACATGATAAGATTCCTGACCTTGATATTTCGGGCATACAGTATGCAGAACTCGGTACCGATGGCACTGGAATGAAGACAAACAATG
CAGGTTCTTACAGGATAATGAAATATGGAGATCCAGATGCAAGGCAGAGAAAGCATCTTGTTGTTATAATAACAGCAGATGTGAAGACAAAGAAGATCAT
AGGGATAGAATCACACATAGAGGGTACTGGACCATCTGAACCAGAAACTGCATCCAGGCACATAAAAGAAGCAGTGAAGAGGGGAGTAAATATAAAAACA
TTCTACGGTGATGGTGCATTCGATGTGAACAATCTCTTCAACCTTACACATTCCATCGGTGCCATACCGGTGATCAAGATCAGGAAGAATGCCTCCACTG
ACAGGCAAAGGGGATCAAAACACAGAAGAAAGGAGGTAAGGGAATACAGGGAGAAAGGTTACAAACAGTGGGCAGAAGAGAAACATTACGGAATGAGGTG
GCCTGGGACTGAAGGAATATTCTCCGCTGTAAAGAGGAAGTTTGGAGAGAACTGTGTAAGCAGGTCTACAGAAGGATTGAAAGCAGAGGGATACCAGAGG
CTCTGGGATATATGACTATATAAACCAGAGGGCAAAGATGGAGGTAAAGTGCATGAATTAGGGGCTGAAAAGAAGAATAAAATCAGAGGAAGAGTGAAAA
GAGCGGAAATCTGGATATTTGTTCAACAGAGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
303 bp | 100 aa | 355 | 53 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MKGTLIVFTIPRSKNGVSPASYSKFYRKLYGYNNSSHYGRYHKRIPGFLDNYKYVKYANGVIVTRTDASEAIVEFLKNNRAEVHHWDVEITDHEKKELEV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
960 bp | 319 aa | 356 | 1315 | + | No |
Chemistry : DDE
ORF sequence :
MGINPNSDINIWQYAHTVIMPRWGKTYRDKRNWKEYNEELVIRGKFFFDFDFVDQWDSELEKMNLGKRGSPFLFPESFMQFMMIWHQYLDYRGLEGMARS
LVNLGIIPEYGDYTTIWHRIHDKIPDLDISGIQYAELGTDGTGMKTNNAGSYRIMKYGDPDARQRKHLVVIITADVKTKKIIGIESHIEGTGPSEPETAS
RHIKEAVKRGVNIKTFYGDGAFDVNNLFNLTHSIGAIPVIKIRKNASTDRQRGSKHRRKEVREYREKGYKQWAEEKHYGMRWPGTEGIFSAVKRKFGENC
VSRSTEGLKAEGYQRLWDI
LVNLGIIPEYGDYTTIWHRIHDKIPDLDISGIQYAELGTDGTGMKTNNAGSYRIMKYGDPDARQRKHLVVIITADVKTKKIIGIESHIEGTGPSEPETAS
RHIKEAVKRGVNIKTFYGDGAFDVNNLFNLTHSIGAIPVIKIRKNASTDRQRGSKHRRKEVREYREKGYKQWAEEKHYGMRWPGTEGIFSAVKRKFGENC
VSRSTEGLKAEGYQRLWDI
Blast result :
Comments
ISFesp1 is 53% aa similar to ISC1058.
References
1] ISfinder annotation (2016)
2] Yelton,A.P., Comolli,L.R., Justice,N.B., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) BMC Genomics 14, 485.
2] Yelton,A.P., Comolli,L.R., Justice,N.B., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) BMC Genomics 14, 485.