ISFesp1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ATDU01000028 ND Ferroplasma sp.
Ferroplasma sp. Type II
DNA section
IS Length : 1433 bp

Ends


IR Length : 18/19

IRL : TGCTGTGTTGAATAAATATTTAAACCGCTTGTAGTTCGAAGCAGTATTTC
IRR : TGCTCTGTTGAACAAATATCCAGATTTCCGCTCTTTTCACTCTTCCTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
CCTATAATATTCCTATTGGGAAAGTATTA9

DNA sequence

TGCTGTGTTGAATAAATATTTAAACCGCTTGTAGTTCGAAGCAGTATTTCCCCTACACTTCCAGTTCCTTCTTCTCGTGATCTGTTATTTCAACATCCCA
GTGGTGTACTTCCGCCCTGTTATTCTTCAGGAATTCAACAATAGCTTCACTTGCATCTGTTCTGGTAACAATAACACCATTGGCATACTTCACATATTTA
TAATTGTCAAGGAATCCTGGTATCCGTTTATGGTACCTGCCATAGTGTGAGGAGTTATTATAACCGTAAAGTTTCCTGTAAAATTTAGAGTAAGAAGCGG
GGCTGACTCCATTCTTTGACCGGGGTATCGTGAAAACAATCAGTGTGCCCTTCATATGGGGATTAATCCAAATTCCGATATAAATATATGGCAGTATGCA
CATACAGTTATAATGCCGAGATGGGGAAAGACTTACAGGGACAAAAGAAACTGGAAGGAATACAATGAGGAACTCGTAATAAGGGGGAAATTCTTCTTTG
ATTTTGATTTCGTGGATCAGTGGGACTCTGAACTTGAGAAAATGAATCTTGGCAAAAGGGGATCACCATTCCTCTTCCCGGAATCGTTCATGCAGTTCAT
GATGATATGGCACCAGTATCTGGATTACCGTGGCCTCGAGGGAATGGCAAGATCACTTGTTAATCTTGGGATAATACCAGAATATGGTGATTATACCACC
ATATGGCACCGCATACATGATAAGATTCCTGACCTTGATATTTCGGGCATACAGTATGCAGAACTCGGTACCGATGGCACTGGAATGAAGACAAACAATG
CAGGTTCTTACAGGATAATGAAATATGGAGATCCAGATGCAAGGCAGAGAAAGCATCTTGTTGTTATAATAACAGCAGATGTGAAGACAAAGAAGATCAT
AGGGATAGAATCACACATAGAGGGTACTGGACCATCTGAACCAGAAACTGCATCCAGGCACATAAAAGAAGCAGTGAAGAGGGGAGTAAATATAAAAACA
TTCTACGGTGATGGTGCATTCGATGTGAACAATCTCTTCAACCTTACACATTCCATCGGTGCCATACCGGTGATCAAGATCAGGAAGAATGCCTCCACTG
ACAGGCAAAGGGGATCAAAACACAGAAGAAAGGAGGTAAGGGAATACAGGGAGAAAGGTTACAAACAGTGGGCAGAAGAGAAACATTACGGAATGAGGTG
GCCTGGGACTGAAGGAATATTCTCCGCTGTAAAGAGGAAGTTTGGAGAGAACTGTGTAAGCAGGTCTACAGAAGGATTGAAAGCAGAGGGATACCAGAGG
CTCTGGGATATATGACTATATAAACCAGAGGGCAAAGATGGAGGTAAAGTGCATGAATTAGGGGCTGAAAAGAAGAATAAAATCAGAGGAAGAGTGAAAA
GAGCGGAAATCTGGATATTTGTTCAACAGAGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
303 bp100 aa35553-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MKGTLIVFTIPRSKNGVSPASYSKFYRKLYGYNNSSHYGRYHKRIPGFLDNYKYVKYANGVIVTRTDASEAIVEFLKNNRAEVHHWDVEITDHEKKELEV

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
960 bp319 aa3561315+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGINPNSDINIWQYAHTVIMPRWGKTYRDKRNWKEYNEELVIRGKFFFDFDFVDQWDSELEKMNLGKRGSPFLFPESFMQFMMIWHQYLDYRGLEGMARS
LVNLGIIPEYGDYTTIWHRIHDKIPDLDISGIQYAELGTDGTGMKTNNAGSYRIMKYGDPDARQRKHLVVIITADVKTKKIIGIESHIEGTGPSEPETAS
RHIKEAVKRGVNIKTFYGDGAFDVNNLFNLTHSIGAIPVIKIRKNASTDRQRGSKHRRKEVREYREKGYKQWAEEKHYGMRWPGTEGIFSAVKRKFGENC
VSRSTEGLKAEGYQRLWDI

 

Blast result :
Comments
ISFesp1 is 53% aa similar to ISC1058.
References
1] ISfinder annotation (2016)
2] Yelton,A.P., Comolli,L.R., Justice,N.B., Castelle,C., Denef,V.J., Thomas,B.C. and Banfield,J.F. (2013) BMC Genomics 14, 485.