ISBva1

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
LLXY01000105 ND Bradyrhizobium valentinum
Bradyrhizobium valentinum LmjM6
DNA section
IS Length : 1988 bp

Ends


IR Length : 19

IRL : CTTTCCGGCGCAAAAATCGGCGGCCTTGTGCGGCTGCCAGAATCGCTCGC
IRR : CTTTCCGGCGCAAAAATCGCGGCTCTGAAGGGCGGGGTCAACCACGCAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTCGCGACAGGAAAC TAGCCTATAGCTA GGAGCCTGTCCAGT0

DNA sequence

CTTTCCGGCGCAAAAATCGGCGGCCTTGTGCGGCTGCCAGAATCGCTCGCTGTGGCGAAAACTGCAAGGTCGGACGGATTGGGGTTGACTTGAAGCGGCA
GCGTTGATTCATTCTTATGAATGATTCATAATCGAGCCCTTCAAACGCGTGAGAAGCTTGTCGACAAGCTACCGGTCACCGGCGAACTGCTGCGCGGCTC
GCTGCTGGAGCGCACGGTTCGTCATAAGAGCGGCTGCCCGAAATGCGCGCGCGGCGAAGGGCACCAGGTGCATGTCCTGACGGTAAGCTATGCGGGCGGA
CGCGTGCGTCAGTTCAGCGTGCGGCGCGAGCGCGTTGCCGAGGTGCGCCGTTGGCTGGACAACTACCAGAAGCTGAAAGACGCGATCGAGGCGATCTGCG
AGCTCAATCACCACCTGCTGCGCCCTGATGCGGCGGTGCCGCGGGGTAGGAAGAAACGTGATTGAGATGCGCAGAGCGCAACTGAGCTTCGGCGACGGCT
TGATCGCCGGGGAAGTGAGCGATCTTCGCGAAGGCTGGATGACCCATGCTGACCGGGTTCTGGCGGATGAACAGATCGTCGGTGCGGTGTACGAGGCGCT
GGCGAGACGACATCCCAAGAGTCGTGGTCGTGGTCGGCTGGGAGCGCCGGCCGAGGTGGTGTTGCGATTGTTGATCCTCAAGCACGTTCGCAACTGGAGC
TATCACGTACTGGAACGCGAAGTGCGCGCCAACCTGGTTTACCGCGACTTCACCCGGGTGGGCGGCGGCAAGACGCCGGACGCCAAGACGATGGGACGTT
GGGGCCTGGCTGTGGATCCGGACACGATCAAGCAGATTCACGACCGGATCGTGCAAATTGCGCAGCAACAAGGGGTGACGCAGGGACGCAGAATGCGCGT
GGATACGACGGTGGTGGAGACCAACATCCATTACCCAACCGACAGCACGTTGCTGGGCGACGGGGTAAGGGTGTTGATCCGCACCATGAAGAAGGTCACC
AAGATCGTCGGCACGGTCGGAACAAAACTGCGCGACCGAACGCGAAGCGTAAAACTGCGCCTGCTCGATATCTCGCGAACCGCGCGTGCCAAAGGACCGC
TCAATCACGAGAAGCTCAAGCAAGGCTACCGGCGGCTGTTGAACTCGACGAGCCGTGTGGTGGGGCAAGCGAAGCGCTTCTCCCATGAGATCGCCACCGC
CGTGAAGCGGGCCAGGGGCATCTTGAAGCGGCTGGCGCTGCAAGGTTTGCGGCTGGAGCTGGAAACGATGATGTCGCTCGTACGGCAGGTGATGCAGCAG
ACCCGGGAACGCATCTTCCGCGGCAACACGCGGGCGGAGGACAAGCTCTTCAGCGTGTTCGATCCCTCGACGGAGATCATTCGCAAGGGCAAGGCCGGCA
AGCCCAACGAGTTCGGCAAGATGGTCAAGCTGCAGGAAGCCGAAAACCAGATCGTGATCGACTACGAAGTCTACGACCGGCGGCCGAGCGATACGGACCT
GTTGATCCCGGCCATCGAAATCCACCAAGCCAAGCTCGGTCGCACGCCACGTCTGGTCGCGGCAGACGCCGGGTTCTACTCCGCCAGGAATGAAGCTGCG
GCGAAGGCAAGTGGCGTCAAACGCGTCTGCATCCCCAATCGCTCCACCAAGAGCGTCGCCCGCAAGCGCGAGCAGAAGAAGCGGTGGTTCCGCAACGGCC
AGAAATGGCGGACCGGATGCGAGGGGCGCATCAGCGTGGCCAAACGGCGGCACGGGCTCGATCGCTGCCGCTACAAAGGCAGCACTGGAATGAAGCGCTG
GGTCGGGCTCGGCGTTGTCGCCGATAACCTCATGAGCATCGGTCGCGTGATGGAGGAGCAGTCACTCCAAAGCTAGTCCAGTTCCAGTGCCAATCTTGGC
CTCTCATCGCCCCGCGGCCCCCGCGGGGCTTCTCGTTGTCTGCGTGGTTGACCCCGCCCTTCAGAGCCGCGATTTTTGCGCCGGAAAG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
345 bp114 aa121465+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MIHNRALQTREKLVDKLPVTGELLRGSLLERTVRHKSGCPKCARGEGHQVHVLTVSYAGGRVRQFSVRRERVAEVRRWLDNYQKLKDAIEAICELNHHLL
RPDAAVPRGRKKRD

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1410 bp469 aa4671876+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRRAQLSFGDGLIAGEVSDLREGWMTHADRVLADEQIVGAVYEALARRHPKSRGRGRLGAPAEVVLRLLILKHVRNWSYHVLEREVRANLVYRDFTRVGG
GKTPDAKTMGRWGLAVDPDTIKQIHDRIVQIAQQQGVTQGRRMRVDTTVVETNIHYPTDSTLLGDGVRVLIRTMKKVTKIVGTVGTKLRDRTRSVKLRLL
DISRTARAKGPLNHEKLKQGYRRLLNSTSRVVGQAKRFSHEIATAVKRARGILKRLALQGLRLELETMMSLVRQVMQQTRERIFRGNTRAEDKLFSVFDP
STEIIRKGKAGKPNEFGKMVKLQEAENQIVIDYEVYDRRPSDTDLLIPAIEIHQAKLGRTPRLVAADAGFYSARNEAAAKASGVKRVCIPNRSTKSVARK
REQKKRWFRNGQKWRTGCEGRISVAKRRHGLDRCRYKGSTGMKRWVGLGVVADNLMSIGRVMEEQSLQS

 

Blast result :
Comments
ISBva1 is 54% aa similar to ISCep2.
References
1] ISfinder annotation (2016)
2] Duran,D., Rey,L., Navarro,A., Busquets,A., Imperial,J. and Ruiz-Argueso,T. (2014) Direct submission GenBank.