ISBva1
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
LLXY01000105 | ND | Bradyrhizobium valentinum | Bradyrhizobium valentinum LmjM6 |
DNA section
IS Length : 1988 bp
Ends
IR Length : 19
IRL : CTTTCCGGCGCAAAAATCGGCGGCCTTGTGCGGCTGCCAGAATCGCTCGC
IRR : CTTTCCGGCGCAAAAATCGCGGCTCTGAAGGGCGGGGTCAACCACGCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCGCGACAGGAAAC TAGCCTA | TAGCTA GGAGCCTGTCCAGT | 0 |
DNA sequence
CTTTCCGGCGCAAAAATCGGCGGCCTTGTGCGGCTGCCAGAATCGCTCGCTGTGGCGAAAACTGCAAGGTCGGACGGATTGGGGTTGACTTGAAGCGGCA
GCGTTGATTCATTCTTATGAATGATTCATAATCGAGCCCTTCAAACGCGTGAGAAGCTTGTCGACAAGCTACCGGTCACCGGCGAACTGCTGCGCGGCTC
GCTGCTGGAGCGCACGGTTCGTCATAAGAGCGGCTGCCCGAAATGCGCGCGCGGCGAAGGGCACCAGGTGCATGTCCTGACGGTAAGCTATGCGGGCGGA
CGCGTGCGTCAGTTCAGCGTGCGGCGCGAGCGCGTTGCCGAGGTGCGCCGTTGGCTGGACAACTACCAGAAGCTGAAAGACGCGATCGAGGCGATCTGCG
AGCTCAATCACCACCTGCTGCGCCCTGATGCGGCGGTGCCGCGGGGTAGGAAGAAACGTGATTGAGATGCGCAGAGCGCAACTGAGCTTCGGCGACGGCT
TGATCGCCGGGGAAGTGAGCGATCTTCGCGAAGGCTGGATGACCCATGCTGACCGGGTTCTGGCGGATGAACAGATCGTCGGTGCGGTGTACGAGGCGCT
GGCGAGACGACATCCCAAGAGTCGTGGTCGTGGTCGGCTGGGAGCGCCGGCCGAGGTGGTGTTGCGATTGTTGATCCTCAAGCACGTTCGCAACTGGAGC
TATCACGTACTGGAACGCGAAGTGCGCGCCAACCTGGTTTACCGCGACTTCACCCGGGTGGGCGGCGGCAAGACGCCGGACGCCAAGACGATGGGACGTT
GGGGCCTGGCTGTGGATCCGGACACGATCAAGCAGATTCACGACCGGATCGTGCAAATTGCGCAGCAACAAGGGGTGACGCAGGGACGCAGAATGCGCGT
GGATACGACGGTGGTGGAGACCAACATCCATTACCCAACCGACAGCACGTTGCTGGGCGACGGGGTAAGGGTGTTGATCCGCACCATGAAGAAGGTCACC
AAGATCGTCGGCACGGTCGGAACAAAACTGCGCGACCGAACGCGAAGCGTAAAACTGCGCCTGCTCGATATCTCGCGAACCGCGCGTGCCAAAGGACCGC
TCAATCACGAGAAGCTCAAGCAAGGCTACCGGCGGCTGTTGAACTCGACGAGCCGTGTGGTGGGGCAAGCGAAGCGCTTCTCCCATGAGATCGCCACCGC
CGTGAAGCGGGCCAGGGGCATCTTGAAGCGGCTGGCGCTGCAAGGTTTGCGGCTGGAGCTGGAAACGATGATGTCGCTCGTACGGCAGGTGATGCAGCAG
ACCCGGGAACGCATCTTCCGCGGCAACACGCGGGCGGAGGACAAGCTCTTCAGCGTGTTCGATCCCTCGACGGAGATCATTCGCAAGGGCAAGGCCGGCA
AGCCCAACGAGTTCGGCAAGATGGTCAAGCTGCAGGAAGCCGAAAACCAGATCGTGATCGACTACGAAGTCTACGACCGGCGGCCGAGCGATACGGACCT
GTTGATCCCGGCCATCGAAATCCACCAAGCCAAGCTCGGTCGCACGCCACGTCTGGTCGCGGCAGACGCCGGGTTCTACTCCGCCAGGAATGAAGCTGCG
GCGAAGGCAAGTGGCGTCAAACGCGTCTGCATCCCCAATCGCTCCACCAAGAGCGTCGCCCGCAAGCGCGAGCAGAAGAAGCGGTGGTTCCGCAACGGCC
AGAAATGGCGGACCGGATGCGAGGGGCGCATCAGCGTGGCCAAACGGCGGCACGGGCTCGATCGCTGCCGCTACAAAGGCAGCACTGGAATGAAGCGCTG
GGTCGGGCTCGGCGTTGTCGCCGATAACCTCATGAGCATCGGTCGCGTGATGGAGGAGCAGTCACTCCAAAGCTAGTCCAGTTCCAGTGCCAATCTTGGC
CTCTCATCGCCCCGCGGCCCCCGCGGGGCTTCTCGTTGTCTGCGTGGTTGACCCCGCCCTTCAGAGCCGCGATTTTTGCGCCGGAAAG
GCGTTGATTCATTCTTATGAATGATTCATAATCGAGCCCTTCAAACGCGTGAGAAGCTTGTCGACAAGCTACCGGTCACCGGCGAACTGCTGCGCGGCTC
GCTGCTGGAGCGCACGGTTCGTCATAAGAGCGGCTGCCCGAAATGCGCGCGCGGCGAAGGGCACCAGGTGCATGTCCTGACGGTAAGCTATGCGGGCGGA
CGCGTGCGTCAGTTCAGCGTGCGGCGCGAGCGCGTTGCCGAGGTGCGCCGTTGGCTGGACAACTACCAGAAGCTGAAAGACGCGATCGAGGCGATCTGCG
AGCTCAATCACCACCTGCTGCGCCCTGATGCGGCGGTGCCGCGGGGTAGGAAGAAACGTGATTGAGATGCGCAGAGCGCAACTGAGCTTCGGCGACGGCT
TGATCGCCGGGGAAGTGAGCGATCTTCGCGAAGGCTGGATGACCCATGCTGACCGGGTTCTGGCGGATGAACAGATCGTCGGTGCGGTGTACGAGGCGCT
GGCGAGACGACATCCCAAGAGTCGTGGTCGTGGTCGGCTGGGAGCGCCGGCCGAGGTGGTGTTGCGATTGTTGATCCTCAAGCACGTTCGCAACTGGAGC
TATCACGTACTGGAACGCGAAGTGCGCGCCAACCTGGTTTACCGCGACTTCACCCGGGTGGGCGGCGGCAAGACGCCGGACGCCAAGACGATGGGACGTT
GGGGCCTGGCTGTGGATCCGGACACGATCAAGCAGATTCACGACCGGATCGTGCAAATTGCGCAGCAACAAGGGGTGACGCAGGGACGCAGAATGCGCGT
GGATACGACGGTGGTGGAGACCAACATCCATTACCCAACCGACAGCACGTTGCTGGGCGACGGGGTAAGGGTGTTGATCCGCACCATGAAGAAGGTCACC
AAGATCGTCGGCACGGTCGGAACAAAACTGCGCGACCGAACGCGAAGCGTAAAACTGCGCCTGCTCGATATCTCGCGAACCGCGCGTGCCAAAGGACCGC
TCAATCACGAGAAGCTCAAGCAAGGCTACCGGCGGCTGTTGAACTCGACGAGCCGTGTGGTGGGGCAAGCGAAGCGCTTCTCCCATGAGATCGCCACCGC
CGTGAAGCGGGCCAGGGGCATCTTGAAGCGGCTGGCGCTGCAAGGTTTGCGGCTGGAGCTGGAAACGATGATGTCGCTCGTACGGCAGGTGATGCAGCAG
ACCCGGGAACGCATCTTCCGCGGCAACACGCGGGCGGAGGACAAGCTCTTCAGCGTGTTCGATCCCTCGACGGAGATCATTCGCAAGGGCAAGGCCGGCA
AGCCCAACGAGTTCGGCAAGATGGTCAAGCTGCAGGAAGCCGAAAACCAGATCGTGATCGACTACGAAGTCTACGACCGGCGGCCGAGCGATACGGACCT
GTTGATCCCGGCCATCGAAATCCACCAAGCCAAGCTCGGTCGCACGCCACGTCTGGTCGCGGCAGACGCCGGGTTCTACTCCGCCAGGAATGAAGCTGCG
GCGAAGGCAAGTGGCGTCAAACGCGTCTGCATCCCCAATCGCTCCACCAAGAGCGTCGCCCGCAAGCGCGAGCAGAAGAAGCGGTGGTTCCGCAACGGCC
AGAAATGGCGGACCGGATGCGAGGGGCGCATCAGCGTGGCCAAACGGCGGCACGGGCTCGATCGCTGCCGCTACAAAGGCAGCACTGGAATGAAGCGCTG
GGTCGGGCTCGGCGTTGTCGCCGATAACCTCATGAGCATCGGTCGCGTGATGGAGGAGCAGTCACTCCAAAGCTAGTCCAGTTCCAGTGCCAATCTTGGC
CTCTCATCGCCCCGCGGCCCCCGCGGGGCTTCTCGTTGTCTGCGTGGTTGACCCCGCCCTTCAGAGCCGCGATTTTTGCGCCGGAAAG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
345 bp | 114 aa | 121 | 465 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MIHNRALQTREKLVDKLPVTGELLRGSLLERTVRHKSGCPKCARGEGHQVHVLTVSYAGGRVRQFSVRRERVAEVRRWLDNYQKLKDAIEAICELNHHLL
RPDAAVPRGRKKRD
RPDAAVPRGRKKRD
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1410 bp | 469 aa | 467 | 1876 | + | No |
Chemistry : DDE
ORF sequence :
MRRAQLSFGDGLIAGEVSDLREGWMTHADRVLADEQIVGAVYEALARRHPKSRGRGRLGAPAEVVLRLLILKHVRNWSYHVLEREVRANLVYRDFTRVGG
GKTPDAKTMGRWGLAVDPDTIKQIHDRIVQIAQQQGVTQGRRMRVDTTVVETNIHYPTDSTLLGDGVRVLIRTMKKVTKIVGTVGTKLRDRTRSVKLRLL
DISRTARAKGPLNHEKLKQGYRRLLNSTSRVVGQAKRFSHEIATAVKRARGILKRLALQGLRLELETMMSLVRQVMQQTRERIFRGNTRAEDKLFSVFDP
STEIIRKGKAGKPNEFGKMVKLQEAENQIVIDYEVYDRRPSDTDLLIPAIEIHQAKLGRTPRLVAADAGFYSARNEAAAKASGVKRVCIPNRSTKSVARK
REQKKRWFRNGQKWRTGCEGRISVAKRRHGLDRCRYKGSTGMKRWVGLGVVADNLMSIGRVMEEQSLQS
GKTPDAKTMGRWGLAVDPDTIKQIHDRIVQIAQQQGVTQGRRMRVDTTVVETNIHYPTDSTLLGDGVRVLIRTMKKVTKIVGTVGTKLRDRTRSVKLRLL
DISRTARAKGPLNHEKLKQGYRRLLNSTSRVVGQAKRFSHEIATAVKRARGILKRLALQGLRLELETMMSLVRQVMQQTRERIFRGNTRAEDKLFSVFDP
STEIIRKGKAGKPNEFGKMVKLQEAENQIVIDYEVYDRRPSDTDLLIPAIEIHQAKLGRTPRLVAADAGFYSARNEAAAKASGVKRVCIPNRSTKSVARK
REQKKRWFRNGQKWRTGCEGRISVAKRRHGLDRCRYKGSTGMKRWVGLGVVADNLMSIGRVMEEQSLQS
Blast result :
Comments
ISBva1 is 54% aa similar to ISCep2.
References
1] ISfinder annotation (2016)
2] Duran,D., Rey,L., Navarro,A., Busquets,A., Imperial,J. and Ruiz-Argueso,T. (2014) Direct submission GenBank.
2] Duran,D., Rey,L., Navarro,A., Busquets,A., Imperial,J. and Ruiz-Argueso,T. (2014) Direct submission GenBank.