ISEc58

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DQ517526 ND Escherichia coli
Escherichia coli
Enterobacter cloacae
Escherichia coli APEC1990_61 plasmid pAPEC1990_61
Salmonella enterica Heidelberg, Anatum, Ouakam, Newport
DNA section
IS Length : 1342 bp

Ends


IR Length : 23/29

IRL : gagggtgtcagaaattttgtgtgagaggcataccatgatgctgccaagga
IRR : gggcgtgtccgattttttgtgtgtgaggcggtttagtccggaagtctctt

Insertion site


Left flankDirect repeatRight flankDR Length
GCGCTTGCGCGGCCGCTTCCTACCTGCCAGAC8

DNA sequence

GAGGGTGTCAGAAATTTTGTGTGAGAGGCATACCATGATGCTGCCAAGGAGCATGTATGCCACGCAAGAAGAAGACGCCGGTGGTCACGCCGGCCATTGA
TCTGCCGAAGGAATTTCTCGAGAAGCTGATCCCGGGTCCGATGGACGCGGCCGGGGTCGAAGCCGTGTTCCAGCAGCTGAAGAAGGCCGTGATCGAGCGG
GCGCTGGGCGCGGAGCTCGGCCTGCACCTGGCCGACGCCGAGGGCGGGAGCGGCAACCACCGCAACGGCCGCAGCGGCAAGACGGTGCTGACCGACGAGG
GTCCGCTGCGCATCGACGTGCCGCGCGACCGGACGGGTACGTTCGAGCCGCAGCTGATCCCCAAGCACGAGCGTCGCTTCGCCGGGTTCGACGATCGGAT
CGTCTCGATGTACGCCCGCGGCATGACGGTGCGTGAGATCCAGGGGCACCTGGCCGAGATGTACAGCGTCGAGGTGTCGCCGGAGTTCATCAGCAAGGTC
ACCGACGAGGTGATGGCCGAGGTCACCGCATGGCAGGCGCGGCCGCTGGAAGCGATGTATCCGGTGGTGTTCTTCGACGCGCTGCGGGTGAAGATCCGCG
AGGACGGCGTGGTGCGCAACAAGGCGGTGTATCTGGCGCTGGGCGTGCTGGCCGACGGCACCCGCGACATCCTCGGGCTGTGGATCGAGAACACCGAGGG
CGCGAAGTTCTGGATGAAGGTGTTCAACGACCTCAAGACGCGCGGCGTCAACGACATCCTGATCGGCGTGGCTGACGGCCTGAAGGGCTTCCCGGAGGCG
CTGGAAGCGGTGTTCCCGGCGACCACGCTGCAGACCTGCATCGTGCACCTGATCCGCAACAGCCTGGACTATGCGGGCTGGAAGGACCGCAAGGCGCTGG
CGGCGGCGATCAAGCCGATCTACACGGCCCCGACCGCCGAGGCCGCAGAGGCCGAGCTGGATGCGTTCGAGGCCGGCGACTGGGGCGAGCGCTTCCCGAC
GGTGGTCGCCGCCTGGCGCCGTGCCTGGACGCGCGTGGTGCCGTTCTTCGCGTTCCCGCCGGACGTGCGCCGGGTGATCTACACGACCAACGCAATCGAG
AGCGTGCATGCGCGCCTGCGCAAGATCATCAAGACCCGCGGCCACTTCCCCAGCGACGAGGCCGCCACCAAGCTGATCTGGCTGGCGCTGCGGAACATCA
CCGCCGAGTGGAGCCGCGCGTCTCAGCACTGGAAGGCGGCGATGAACCAGTTCGCGATAATCTACGAAGACCGATTCACGCTGGCTCGCTGAAAGAGACT
TCCGGACTAAACCGCCTCACACACAAAAAATCGGACACGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1236 bp411 aa571292+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPRKKKTPVVTPAIDLPKEFLEKLIPGPMDAAGVEAVFQQLKKAVIERALGAELGLHLADAEGGSGNHRNGRSGKTVLTDEGPLRIDVPRDRTGTFEPQL
IPKHERRFAGFDDRIVSMYARGMTVREIQGHLAEMYSVEVSPEFISKVTDEVMAEVTAWQARPLEAMYPVVFFDALRVKIREDGVVRNKAVYLALGVLAD
GTRDILGLWIENTEGAKFWMKVFNDLKTRGVNDILIGVADGLKGFPEALEAVFPATTLQTCIVHLIRNSLDYAGWKDRKALAAAIKPIYTAPTAEAAEAE
LDAFEAGDWGERFPTVVAAWRRAWTRVVPFFAFPPDVRRVIYTTNAIESVHARLRKIIKTRGHFPSDEAATKLIWLALRNITAEWSRASQHWKAAMNQFA
IIYEDRFTLAR

 

Blast result :
Comments
ISEc58 is 83% aa similar to ISMca5.
References
1] Sally Partridge. (2016) Direct submission.
2] Fernandez-Alarcon,C., Singer,R.S. and Johnson,T.J. (2011) PLoS ONE 6 (8), E23415
3] McCorrison,J., Sanka,R., Adams,M., Brinkac,L., Sutton,G., Kreiswirth,B. and Chen,L. 2014) Direct submission GenBank.
4] Marasini,D., Abo-Shama,U.H. and Fakhr,M.K. (2016) Genome Announc 4 (1), e01619-15.