ISEc58
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DQ517526 | ND | Escherichia coli | Escherichia coli Enterobacter cloacae Escherichia coli APEC1990_61 plasmid pAPEC1990_61 Salmonella enterica Heidelberg, Anatum, Ouakam, Newport |
DNA section
IS Length : 1342 bp
Ends
IR Length : 23/29
IRL : gagggtgtcagaaattttgtgtgagaggcataccatgatgctgccaagga
IRR : gggcgtgtccgattttttgtgtgtgaggcggtttagtccggaagtctctt
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGCTTGCGCGG | CCGCTTCC | TACCTGCCAGAC | 8 |
DNA sequence
GAGGGTGTCAGAAATTTTGTGTGAGAGGCATACCATGATGCTGCCAAGGAGCATGTATGCCACGCAAGAAGAAGACGCCGGTGGTCACGCCGGCCATTGA
TCTGCCGAAGGAATTTCTCGAGAAGCTGATCCCGGGTCCGATGGACGCGGCCGGGGTCGAAGCCGTGTTCCAGCAGCTGAAGAAGGCCGTGATCGAGCGG
GCGCTGGGCGCGGAGCTCGGCCTGCACCTGGCCGACGCCGAGGGCGGGAGCGGCAACCACCGCAACGGCCGCAGCGGCAAGACGGTGCTGACCGACGAGG
GTCCGCTGCGCATCGACGTGCCGCGCGACCGGACGGGTACGTTCGAGCCGCAGCTGATCCCCAAGCACGAGCGTCGCTTCGCCGGGTTCGACGATCGGAT
CGTCTCGATGTACGCCCGCGGCATGACGGTGCGTGAGATCCAGGGGCACCTGGCCGAGATGTACAGCGTCGAGGTGTCGCCGGAGTTCATCAGCAAGGTC
ACCGACGAGGTGATGGCCGAGGTCACCGCATGGCAGGCGCGGCCGCTGGAAGCGATGTATCCGGTGGTGTTCTTCGACGCGCTGCGGGTGAAGATCCGCG
AGGACGGCGTGGTGCGCAACAAGGCGGTGTATCTGGCGCTGGGCGTGCTGGCCGACGGCACCCGCGACATCCTCGGGCTGTGGATCGAGAACACCGAGGG
CGCGAAGTTCTGGATGAAGGTGTTCAACGACCTCAAGACGCGCGGCGTCAACGACATCCTGATCGGCGTGGCTGACGGCCTGAAGGGCTTCCCGGAGGCG
CTGGAAGCGGTGTTCCCGGCGACCACGCTGCAGACCTGCATCGTGCACCTGATCCGCAACAGCCTGGACTATGCGGGCTGGAAGGACCGCAAGGCGCTGG
CGGCGGCGATCAAGCCGATCTACACGGCCCCGACCGCCGAGGCCGCAGAGGCCGAGCTGGATGCGTTCGAGGCCGGCGACTGGGGCGAGCGCTTCCCGAC
GGTGGTCGCCGCCTGGCGCCGTGCCTGGACGCGCGTGGTGCCGTTCTTCGCGTTCCCGCCGGACGTGCGCCGGGTGATCTACACGACCAACGCAATCGAG
AGCGTGCATGCGCGCCTGCGCAAGATCATCAAGACCCGCGGCCACTTCCCCAGCGACGAGGCCGCCACCAAGCTGATCTGGCTGGCGCTGCGGAACATCA
CCGCCGAGTGGAGCCGCGCGTCTCAGCACTGGAAGGCGGCGATGAACCAGTTCGCGATAATCTACGAAGACCGATTCACGCTGGCTCGCTGAAAGAGACT
TCCGGACTAAACCGCCTCACACACAAAAAATCGGACACGCCC
TCTGCCGAAGGAATTTCTCGAGAAGCTGATCCCGGGTCCGATGGACGCGGCCGGGGTCGAAGCCGTGTTCCAGCAGCTGAAGAAGGCCGTGATCGAGCGG
GCGCTGGGCGCGGAGCTCGGCCTGCACCTGGCCGACGCCGAGGGCGGGAGCGGCAACCACCGCAACGGCCGCAGCGGCAAGACGGTGCTGACCGACGAGG
GTCCGCTGCGCATCGACGTGCCGCGCGACCGGACGGGTACGTTCGAGCCGCAGCTGATCCCCAAGCACGAGCGTCGCTTCGCCGGGTTCGACGATCGGAT
CGTCTCGATGTACGCCCGCGGCATGACGGTGCGTGAGATCCAGGGGCACCTGGCCGAGATGTACAGCGTCGAGGTGTCGCCGGAGTTCATCAGCAAGGTC
ACCGACGAGGTGATGGCCGAGGTCACCGCATGGCAGGCGCGGCCGCTGGAAGCGATGTATCCGGTGGTGTTCTTCGACGCGCTGCGGGTGAAGATCCGCG
AGGACGGCGTGGTGCGCAACAAGGCGGTGTATCTGGCGCTGGGCGTGCTGGCCGACGGCACCCGCGACATCCTCGGGCTGTGGATCGAGAACACCGAGGG
CGCGAAGTTCTGGATGAAGGTGTTCAACGACCTCAAGACGCGCGGCGTCAACGACATCCTGATCGGCGTGGCTGACGGCCTGAAGGGCTTCCCGGAGGCG
CTGGAAGCGGTGTTCCCGGCGACCACGCTGCAGACCTGCATCGTGCACCTGATCCGCAACAGCCTGGACTATGCGGGCTGGAAGGACCGCAAGGCGCTGG
CGGCGGCGATCAAGCCGATCTACACGGCCCCGACCGCCGAGGCCGCAGAGGCCGAGCTGGATGCGTTCGAGGCCGGCGACTGGGGCGAGCGCTTCCCGAC
GGTGGTCGCCGCCTGGCGCCGTGCCTGGACGCGCGTGGTGCCGTTCTTCGCGTTCCCGCCGGACGTGCGCCGGGTGATCTACACGACCAACGCAATCGAG
AGCGTGCATGCGCGCCTGCGCAAGATCATCAAGACCCGCGGCCACTTCCCCAGCGACGAGGCCGCCACCAAGCTGATCTGGCTGGCGCTGCGGAACATCA
CCGCCGAGTGGAGCCGCGCGTCTCAGCACTGGAAGGCGGCGATGAACCAGTTCGCGATAATCTACGAAGACCGATTCACGCTGGCTCGCTGAAAGAGACT
TCCGGACTAAACCGCCTCACACACAAAAAATCGGACACGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 57 | 1292 | + | No |
Chemistry : DDE
ORF sequence :
MPRKKKTPVVTPAIDLPKEFLEKLIPGPMDAAGVEAVFQQLKKAVIERALGAELGLHLADAEGGSGNHRNGRSGKTVLTDEGPLRIDVPRDRTGTFEPQL
IPKHERRFAGFDDRIVSMYARGMTVREIQGHLAEMYSVEVSPEFISKVTDEVMAEVTAWQARPLEAMYPVVFFDALRVKIREDGVVRNKAVYLALGVLAD
GTRDILGLWIENTEGAKFWMKVFNDLKTRGVNDILIGVADGLKGFPEALEAVFPATTLQTCIVHLIRNSLDYAGWKDRKALAAAIKPIYTAPTAEAAEAE
LDAFEAGDWGERFPTVVAAWRRAWTRVVPFFAFPPDVRRVIYTTNAIESVHARLRKIIKTRGHFPSDEAATKLIWLALRNITAEWSRASQHWKAAMNQFA
IIYEDRFTLAR
IPKHERRFAGFDDRIVSMYARGMTVREIQGHLAEMYSVEVSPEFISKVTDEVMAEVTAWQARPLEAMYPVVFFDALRVKIREDGVVRNKAVYLALGVLAD
GTRDILGLWIENTEGAKFWMKVFNDLKTRGVNDILIGVADGLKGFPEALEAVFPATTLQTCIVHLIRNSLDYAGWKDRKALAAAIKPIYTAPTAEAAEAE
LDAFEAGDWGERFPTVVAAWRRAWTRVVPFFAFPPDVRRVIYTTNAIESVHARLRKIIKTRGHFPSDEAATKLIWLALRNITAEWSRASQHWKAAMNQFA
IIYEDRFTLAR
Blast result :
Comments
ISEc58 is 83% aa similar to ISMca5.
References
1] Sally Partridge. (2016) Direct submission.
2] Fernandez-Alarcon,C., Singer,R.S. and Johnson,T.J. (2011) PLoS ONE 6 (8), E23415
3] McCorrison,J., Sanka,R., Adams,M., Brinkac,L., Sutton,G., Kreiswirth,B. and Chen,L. 2014) Direct submission GenBank.
4] Marasini,D., Abo-Shama,U.H. and Fakhr,M.K. (2016) Genome Announc 4 (1), e01619-15.
2] Fernandez-Alarcon,C., Singer,R.S. and Johnson,T.J. (2011) PLoS ONE 6 (8), E23415
3] McCorrison,J., Sanka,R., Adams,M., Brinkac,L., Sutton,G., Kreiswirth,B. and Chen,L. 2014) Direct submission GenBank.
4] Marasini,D., Abo-Shama,U.H. and Fakhr,M.K. (2016) Genome Announc 4 (1), e01619-15.