ISCep2
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| CP003620 | ND | Crinalium epipsammum | Crinalium epipsammum PCC 9333 |
DNA section
IS Length : 1822 bp
Ends
IR Length : 67/71
IRL : CTGGACTTTAGACTAGTTCCCGGTGCAAAACTTCCTGCGATCGCCACTTA
IRR : CTGGAGTTTAGACTAGTTCCCGGTGCAAAACTTCTGCGATCGCCACTTAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AATTTTCAATCC | TAAATCA | AAATCCAGATT | 7 |
DNA sequence
CTGGACTTTAGACTAGTTCCCGGTGCAAAACTTCCTGCGATCGCCACTTAGGAACCACTTGATAATCATTCTCATCTAAAAGAGAGCATGAGGAAATACT
CTATTGCTGTTTTCTGATGTCTATGGCTTAGAATATCTGGCAGCCATCAAATTTGATCATAAACACTATTGTGTTACGTCAAAAATATACCATTGATCCT
CGCTTCAGCCGTCTACTGAAATTAAGCGGATTGAATAATGCGGAATTAGATGAGATTGATAAGATTTTAGGAGATAGACAATTATATGAATACCTAGAAT
CTGATTTATCAAAACGTTATCCTAAAACCAAGGAAACAGGTAGAAATTCCACTCCTGTAGAAGTTATATTCAGGTTACTGGTTCTGAAACATCTCTACCA
GATAAGTTATCAAGAGATTCTTAATCGTGTTAATGAAAATTTAGTATTAAGGCAATTCTGTCGAGTCTACTTCAATCAACTCCCTAGTAAAAGTACATTG
ATTCGCTGGGCGAATTTAATTAAAGCTGAAACCCTTAAGCAATTTAATCAACGTCTTACTGAGTTAGCAACGCAATTAGAAGTTACCCAAGGTGAAAAGG
TTAGAACTGATGGTACAGTTGTATCAACCAATATTCACTTTCCTTCTGATAATAGCTTATTGGTAGATGGAGTGAGAGTTTTAAATCGTCATATTCAACA
CGCTAGAAAATTAATAATAAAGCAAAATATTCCTACTGATCACCGCTTGTTTCAAAACCGCCATCGCACTGCTAAAATTATTGCTCGAAAAATAGATGAT
TTATCTAGAACTCGAACTCAAGCAGGAAGTGATAAAAGAAAATTACTTTACCAAAAGTTATTAGATGTAGCATCAGCTACCTTAAAGCAAGCCCAGCAAG
TTAAAGCTATTTTACACAACGCTATTGGCAAAGATGTAAACAAATTATCCAAAACATTCCAGCTATTTATCAATCGTGTTGAACAAGTTATCAATCAGAC
ATTTAGACGGATAGTGGGGCAAGAAAAAGTCCCATCTTCTGAAAAAATTGTCAGTATTTTTGAAAGCCATAGCGACATTATTTGCCGTGGTAAACAGAAT
GTATTAGTTGAATTTGGTCATAAAGTTTGGTTAGATGAAGTAGATGGCGGGATTATTAGTAACTACCGCGTTCTCAAAGGAAATCCTCATGATACCCAAC
AACTTCCTGAAACTATTGACCAACATCTGAAACAATTTGGTCATCCCCCTAAGCAAATTTCGGCTGATCGAGGTGTTTTTTCGAGCCTTAATGAAAATTA
TGCTAAAAGCCAAGGAATTAAGCAAATTATTTTACCTAAGCCGGGATATAAATCAAAAGAACGGCAGATACAAGAGAAAAAAAGAAGTTTTTATTTAGGT
CGTTGTTGGCACAATGGTGTTGAGGGGCGTATTAGTTTTCTTAAACGTTGTTTTGGGTTCCAACGTTGTTTATATCATTGTGAAGAGGGTTTTGAGCGTT
GGGTAGGTTGGGGTATAGTTGTACATAATTTTTTGATGATAGGACGAACTTTAATTCATAAAAAAAGCATTGCTTGTGAATGAATTAAATTTGCATCGCT
TTTTGAATCAATATTACATACCAATAAAAAACAAGATATATGAGTTAAGGATTTTTCTTAATTCTTCATTCTAATTTATTAGTAGCTAGTAAATTTAATA
AACCCTTAAAGGTTTATGTCTTAATGAAAATTTCATTGTCGGTCAGGAATGATAATGATTATCAAGCGGTTACTAAGTGGCGATCGCAGAAGTTTTGCAC
CGGGAACTAGTCTAAACTCCAG
CTATTGCTGTTTTCTGATGTCTATGGCTTAGAATATCTGGCAGCCATCAAATTTGATCATAAACACTATTGTGTTACGTCAAAAATATACCATTGATCCT
CGCTTCAGCCGTCTACTGAAATTAAGCGGATTGAATAATGCGGAATTAGATGAGATTGATAAGATTTTAGGAGATAGACAATTATATGAATACCTAGAAT
CTGATTTATCAAAACGTTATCCTAAAACCAAGGAAACAGGTAGAAATTCCACTCCTGTAGAAGTTATATTCAGGTTACTGGTTCTGAAACATCTCTACCA
GATAAGTTATCAAGAGATTCTTAATCGTGTTAATGAAAATTTAGTATTAAGGCAATTCTGTCGAGTCTACTTCAATCAACTCCCTAGTAAAAGTACATTG
ATTCGCTGGGCGAATTTAATTAAAGCTGAAACCCTTAAGCAATTTAATCAACGTCTTACTGAGTTAGCAACGCAATTAGAAGTTACCCAAGGTGAAAAGG
TTAGAACTGATGGTACAGTTGTATCAACCAATATTCACTTTCCTTCTGATAATAGCTTATTGGTAGATGGAGTGAGAGTTTTAAATCGTCATATTCAACA
CGCTAGAAAATTAATAATAAAGCAAAATATTCCTACTGATCACCGCTTGTTTCAAAACCGCCATCGCACTGCTAAAATTATTGCTCGAAAAATAGATGAT
TTATCTAGAACTCGAACTCAAGCAGGAAGTGATAAAAGAAAATTACTTTACCAAAAGTTATTAGATGTAGCATCAGCTACCTTAAAGCAAGCCCAGCAAG
TTAAAGCTATTTTACACAACGCTATTGGCAAAGATGTAAACAAATTATCCAAAACATTCCAGCTATTTATCAATCGTGTTGAACAAGTTATCAATCAGAC
ATTTAGACGGATAGTGGGGCAAGAAAAAGTCCCATCTTCTGAAAAAATTGTCAGTATTTTTGAAAGCCATAGCGACATTATTTGCCGTGGTAAACAGAAT
GTATTAGTTGAATTTGGTCATAAAGTTTGGTTAGATGAAGTAGATGGCGGGATTATTAGTAACTACCGCGTTCTCAAAGGAAATCCTCATGATACCCAAC
AACTTCCTGAAACTATTGACCAACATCTGAAACAATTTGGTCATCCCCCTAAGCAAATTTCGGCTGATCGAGGTGTTTTTTCGAGCCTTAATGAAAATTA
TGCTAAAAGCCAAGGAATTAAGCAAATTATTTTACCTAAGCCGGGATATAAATCAAAAGAACGGCAGATACAAGAGAAAAAAAGAAGTTTTTATTTAGGT
CGTTGTTGGCACAATGGTGTTGAGGGGCGTATTAGTTTTCTTAAACGTTGTTTTGGGTTCCAACGTTGTTTATATCATTGTGAAGAGGGTTTTGAGCGTT
GGGTAGGTTGGGGTATAGTTGTACATAATTTTTTGATGATAGGACGAACTTTAATTCATAAAAAAAGCATTGCTTGTGAATGAATTAAATTTGCATCGCT
TTTTGAATCAATATTACATACCAATAAAAAACAAGATATATGAGTTAAGGATTTTTCTTAATTCTTCATTCTAATTTATTAGTAGCTAGTAAATTTAATA
AACCCTTAAAGGTTTATGTCTTAATGAAAATTTCATTGTCGGTCAGGAATGATAATGATTATCAAGCGGTTACTAAGTGGCGATCGCAGAAGTTTTGCAC
CGGGAACTAGTCTAAACTCCAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1413 bp | 470 aa | 171 | 1583 | + | No |
Chemistry : DDE
ORF sequence :
MLRQKYTIDPRFSRLLKLSGLNNAELDEIDKILGDRQLYEYLESDLSKRYPKTKETGRNSTPVEVIFRLLVLKHLYQISYQEILNRVNENLVLRQFCRVY
FNQLPSKSTLIRWANLIKAETLKQFNQRLTELATQLEVTQGEKVRTDGTVVSTNIHFPSDNSLLVDGVRVLNRHIQHARKLIIKQNIPTDHRLFQNRHRT
AKIIARKIDDLSRTRTQAGSDKRKLLYQKLLDVASATLKQAQQVKAILHNAIGKDVNKLSKTFQLFINRVEQVINQTFRRIVGQEKVPSSEKIVSIFESH
SDIICRGKQNVLVEFGHKVWLDEVDGGIISNYRVLKGNPHDTQQLPETIDQHLKQFGHPPKQISADRGVFSSLNENYAKSQGIKQIILPKPGYKSKERQI
QEKKRSFYLGRCWHNGVEGRISFLKRCFGFQRCLYHCEEGFERWVGWGIVVHNFLMIGRTLIHKKSIACE
FNQLPSKSTLIRWANLIKAETLKQFNQRLTELATQLEVTQGEKVRTDGTVVSTNIHFPSDNSLLVDGVRVLNRHIQHARKLIIKQNIPTDHRLFQNRHRT
AKIIARKIDDLSRTRTQAGSDKRKLLYQKLLDVASATLKQAQQVKAILHNAIGKDVNKLSKTFQLFINRVEQVINQTFRRIVGQEKVPSSEKIVSIFESH
SDIICRGKQNVLVEFGHKVWLDEVDGGIISNYRVLKGNPHDTQQLPETIDQHLKQFGHPPKQISADRGVFSSLNENYAKSQGIKQIILPKPGYKSKERQI
QEKKRSFYLGRCWHNGVEGRISFLKRCFGFQRCLYHCEEGFERWVGWGIVVHNFLMIGRTLIHKKSIACE
Blast result :
Comments
ISCep2 is 81% aa similar to ISDsac1.
References
1] ISfinder annotation (2016)
2] Gugger,M., Coursin,T., Rippka,R., Tandeau De Marsac,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Davenport,K., Daligault,H., Erkkila,T., Gu,W., Munk,A.C.C., Teshima,H., Xu,Y., Chain,P., Chen,A., Krypides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Peters,L., Pitluck,S., Woyke,T. and Kerfeld,C. (2012) Direct submission GenBank.
2] Gugger,M., Coursin,T., Rippka,R., Tandeau De Marsac,N., Huntemann,M., Wei,C.-L., Han,J., Detter,J.C., Han,C., Tapia,R., Davenport,K., Daligault,H., Erkkila,T., Gu,W., Munk,A.C.C., Teshima,H., Xu,Y., Chain,P., Chen,A., Krypides,N., Mavromatis,K., Markowitz,V., Szeto,E., Ivanova,N., Mikhailova,N., Ovchinnikova,G., Pagani,I., Pati,A., Goodwin,L., Peters,L., Pitluck,S., Woyke,T. and Kerfeld,C. (2012) Direct submission GenBank.