ISDpr11

  • Family ISNCY
  • Group ISDol1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ADZZ01000484 ND Delta proteobacterium
Delta proteobacterium NaphS2
DNA section
IS Length : 1769 bp

Ends


IR Length : 12/16

IRL : GACGCAAAAGGCGAGAAAGTTATTTCCAAATTATAATAATTGTTGTATAA
IRR : GAGGGAAAGGGCGACATTTATATCGGATATCCCAATTATTGAAATTGGAA

Insertion site


Left flankDirect repeatRight flankDR Length
TATTTTCGAATATTTTAAAATTTTGTATTTTCG0

DNA sequence

GACGCAAAAGGCGAGAAAGTTATTTCCAAATTATAATAATTGTTGTATAATGCCATATATTAACTTTAAATGACGCATTGCGTTATTGTTTCGCAAATAT
TCGAGGGAAAATATGCGCAAAGTGATTGAAGAACAGATGAAATTCGGAGAGGTTGTCATCGAAAACATTGAGTTTGATATTTGCTCTCGCGATGAGATTC
CAAAACTGCTTCTTGGACTTTAGGAGGTGTACTGTAATCTCCCACTGAGGGCGCAAGTATTTGAAGTGCTCGAAAAGCTCACACCCTCCACCATAAATTC
GAACAAGGGAAGAAGAGGGATGGATCTGTGGAAAATCTTAGTTTTGGGAACGCTTCGCCTTGACTGCAACTGGGATTACGACAAGTTGAAGGAAATTGCT
GATAATCATAAAACGGTCCGGGAAATGCTCGGTCACGGCCAAATGGATTGGAAAGTCCGCTACCCTCTTCAGACCTTGAAAGATAACATTTCACTTTTTA
CCCCTGGGATTCTCGATGAGATCAATCAGATCGTTGTGAACCATGGTCAAAAAACAATTGGGAAGGGCTCCGAGCAAAAAATTAATGCGAGTTGTGATTC
TTTCGTATTGGAAACTGATGCTCACTATCCCACCGATATTAATCTTCTTTTTGATGCTATGAGGAAAACAATTTTGCTGATTATGAAGCTTTGTGATCAG
CTCGGGTTGTCCGGATGGCGCAAGGGGAAATACCTTCTGAAAGAAGTTAAGAAGCTTTTTCGAAAGGTCCAACTGCTGAAAAGGTCCACATCTAAAATCA
AGGAGAAAAAAGCCGCAAGAGAACGGTTGATTATTGACGCGCACCTCGCCTACCTTGAATTATGTCAGGCTTTGATTGAAAAAGCCAAAGACAGTCTTTT
AAGCATATGCCCATCAGATATCATCTCTTCCCTGAAAGCAGATGAAATTACGAAATATATTGCCCATGCAGAGCGACAGATGGAGCAGATTCGGAGGAGA
GTGGTTGAAGGGGAATCCATTCCACACAATGAGAAGGTATTTTCGATTTTTGAGGAGCATACAGAGTGGATCAGCAAAGGAAAGGCCGGTGTACGTCAGG
AGTTGGGTCTCAGGGTATGTGTTGTGAAAGATCAGTTCGGGTTCATTCTCCATCATCGGGTAATGCAGAATGAAACGGATGATAAAATCGCGGTACCCAT
CATACAGGAAGTAAAAGACCGGTTTCCGAACTTGAGTTGCTGCAGTTTTGACAAAGGGTTTCATAGTCCACAGAACCAGCTGGAATTAAATGATATTTTG
CATCGCGTGGTACTTCCCCGTAAAGGAAGACTCTCTGCTATCAATAAAGAAATCGAGAGCTCAGCGGAATTTCGGGAAACCCGACGGAAGCATTCTGCAG
TAGAGTCCTCCATAAATGCCCTTGAAAATCATGGCTTGGATCGTTGCCGAGACCGTGGGATAACTGGATTCAAGCGCTATGTCGGGCTCGCTGTTCTGGC
TCGAAATCTGCAGATTCTTGGCCATGCAATTCAGCAAAAAGAACTCAAGCGAGTACAGCGAGCTGAGAGGAAGCAAAAGCTAACACTTGCCGCATAATTT
TTCTCTCGGATAGTGTACTACTCTACAATCGTGTTTAAAACAGGAGAGGTTCGCCTAAATGCAAGGAAAGTAGGCGACTTCGTTTGGGGGGAGGCGACAA
ACGGTTGAAGCATGGGATGTTCCAATTTCAATAATTGGGATATCCGATATAAATGTCGCCCTTTCCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1371 bp456 aa2271597+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MYCNLPLRAQVFEVLEKLTPSTINSNKGRRGMDLWKILVLGTLRLDCNWDYDKLKEIADNHKTVREMLGHGQMDWKVRYPLQTLKDNISLFTPGILDEIN
QIVVNHGQKTIGKGSEQKINASCDSFVLETDAHYPTDINLLFDAMRKTILLIMKLCDQLGLSGWRKGKYLLKEVKKLFRKVQLLKRSTSKIKEKKAARER
LIIDAHLAYLELCQALIEKAKDSLLSICPSDIISSLKADEITKYIAHAERQMEQIRRRVVEGESIPHNEKVFSIFEEHTEWISKGKAGVRQELGLRVCVV
KDQFGFILHHRVMQNETDDKIAVPIIQEVKDRFPNLSCCSFDKGFHSPQNQLELNDILHRVVLPRKGRLSAINKEIESSAEFRETRRKHSAVESSINALE
NHGLDRCRDRGITGFKRYVGLAVLARNLQILGHAIQQKELKRVQRAERKQKLTLAA

 

Blast result :
Comments
ISDpr11 is 66% aa similar to ISPph5.
References
1] ISfinder annotation (2016)
2] Didonato,R.J., Young,N.D., Butler,J.E., Chin,K.J., Hixson,K.K., Mouser,P., Lipton,M.S., Deboy,R. and Methe,B.A. (2010) PLoS ONE 5 (11), E14072.