ISDpr11
- Family ISNCY
- Group ISDol1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ADZZ01000484 | ND | Delta proteobacterium | Delta proteobacterium NaphS2 |
DNA section
IS Length : 1769 bp
Ends
IR Length : 12/16
IRL : GACGCAAAAGGCGAGAAAGTTATTTCCAAATTATAATAATTGTTGTATAA
IRR : GAGGGAAAGGGCGACATTTATATCGGATATCCCAATTATTGAAATTGGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTTTCGAATATTTT | AAAATTTTGTATTTTCG | 0 |
DNA sequence
GACGCAAAAGGCGAGAAAGTTATTTCCAAATTATAATAATTGTTGTATAATGCCATATATTAACTTTAAATGACGCATTGCGTTATTGTTTCGCAAATAT
TCGAGGGAAAATATGCGCAAAGTGATTGAAGAACAGATGAAATTCGGAGAGGTTGTCATCGAAAACATTGAGTTTGATATTTGCTCTCGCGATGAGATTC
CAAAACTGCTTCTTGGACTTTAGGAGGTGTACTGTAATCTCCCACTGAGGGCGCAAGTATTTGAAGTGCTCGAAAAGCTCACACCCTCCACCATAAATTC
GAACAAGGGAAGAAGAGGGATGGATCTGTGGAAAATCTTAGTTTTGGGAACGCTTCGCCTTGACTGCAACTGGGATTACGACAAGTTGAAGGAAATTGCT
GATAATCATAAAACGGTCCGGGAAATGCTCGGTCACGGCCAAATGGATTGGAAAGTCCGCTACCCTCTTCAGACCTTGAAAGATAACATTTCACTTTTTA
CCCCTGGGATTCTCGATGAGATCAATCAGATCGTTGTGAACCATGGTCAAAAAACAATTGGGAAGGGCTCCGAGCAAAAAATTAATGCGAGTTGTGATTC
TTTCGTATTGGAAACTGATGCTCACTATCCCACCGATATTAATCTTCTTTTTGATGCTATGAGGAAAACAATTTTGCTGATTATGAAGCTTTGTGATCAG
CTCGGGTTGTCCGGATGGCGCAAGGGGAAATACCTTCTGAAAGAAGTTAAGAAGCTTTTTCGAAAGGTCCAACTGCTGAAAAGGTCCACATCTAAAATCA
AGGAGAAAAAAGCCGCAAGAGAACGGTTGATTATTGACGCGCACCTCGCCTACCTTGAATTATGTCAGGCTTTGATTGAAAAAGCCAAAGACAGTCTTTT
AAGCATATGCCCATCAGATATCATCTCTTCCCTGAAAGCAGATGAAATTACGAAATATATTGCCCATGCAGAGCGACAGATGGAGCAGATTCGGAGGAGA
GTGGTTGAAGGGGAATCCATTCCACACAATGAGAAGGTATTTTCGATTTTTGAGGAGCATACAGAGTGGATCAGCAAAGGAAAGGCCGGTGTACGTCAGG
AGTTGGGTCTCAGGGTATGTGTTGTGAAAGATCAGTTCGGGTTCATTCTCCATCATCGGGTAATGCAGAATGAAACGGATGATAAAATCGCGGTACCCAT
CATACAGGAAGTAAAAGACCGGTTTCCGAACTTGAGTTGCTGCAGTTTTGACAAAGGGTTTCATAGTCCACAGAACCAGCTGGAATTAAATGATATTTTG
CATCGCGTGGTACTTCCCCGTAAAGGAAGACTCTCTGCTATCAATAAAGAAATCGAGAGCTCAGCGGAATTTCGGGAAACCCGACGGAAGCATTCTGCAG
TAGAGTCCTCCATAAATGCCCTTGAAAATCATGGCTTGGATCGTTGCCGAGACCGTGGGATAACTGGATTCAAGCGCTATGTCGGGCTCGCTGTTCTGGC
TCGAAATCTGCAGATTCTTGGCCATGCAATTCAGCAAAAAGAACTCAAGCGAGTACAGCGAGCTGAGAGGAAGCAAAAGCTAACACTTGCCGCATAATTT
TTCTCTCGGATAGTGTACTACTCTACAATCGTGTTTAAAACAGGAGAGGTTCGCCTAAATGCAAGGAAAGTAGGCGACTTCGTTTGGGGGGAGGCGACAA
ACGGTTGAAGCATGGGATGTTCCAATTTCAATAATTGGGATATCCGATATAAATGTCGCCCTTTCCCTC
TCGAGGGAAAATATGCGCAAAGTGATTGAAGAACAGATGAAATTCGGAGAGGTTGTCATCGAAAACATTGAGTTTGATATTTGCTCTCGCGATGAGATTC
CAAAACTGCTTCTTGGACTTTAGGAGGTGTACTGTAATCTCCCACTGAGGGCGCAAGTATTTGAAGTGCTCGAAAAGCTCACACCCTCCACCATAAATTC
GAACAAGGGAAGAAGAGGGATGGATCTGTGGAAAATCTTAGTTTTGGGAACGCTTCGCCTTGACTGCAACTGGGATTACGACAAGTTGAAGGAAATTGCT
GATAATCATAAAACGGTCCGGGAAATGCTCGGTCACGGCCAAATGGATTGGAAAGTCCGCTACCCTCTTCAGACCTTGAAAGATAACATTTCACTTTTTA
CCCCTGGGATTCTCGATGAGATCAATCAGATCGTTGTGAACCATGGTCAAAAAACAATTGGGAAGGGCTCCGAGCAAAAAATTAATGCGAGTTGTGATTC
TTTCGTATTGGAAACTGATGCTCACTATCCCACCGATATTAATCTTCTTTTTGATGCTATGAGGAAAACAATTTTGCTGATTATGAAGCTTTGTGATCAG
CTCGGGTTGTCCGGATGGCGCAAGGGGAAATACCTTCTGAAAGAAGTTAAGAAGCTTTTTCGAAAGGTCCAACTGCTGAAAAGGTCCACATCTAAAATCA
AGGAGAAAAAAGCCGCAAGAGAACGGTTGATTATTGACGCGCACCTCGCCTACCTTGAATTATGTCAGGCTTTGATTGAAAAAGCCAAAGACAGTCTTTT
AAGCATATGCCCATCAGATATCATCTCTTCCCTGAAAGCAGATGAAATTACGAAATATATTGCCCATGCAGAGCGACAGATGGAGCAGATTCGGAGGAGA
GTGGTTGAAGGGGAATCCATTCCACACAATGAGAAGGTATTTTCGATTTTTGAGGAGCATACAGAGTGGATCAGCAAAGGAAAGGCCGGTGTACGTCAGG
AGTTGGGTCTCAGGGTATGTGTTGTGAAAGATCAGTTCGGGTTCATTCTCCATCATCGGGTAATGCAGAATGAAACGGATGATAAAATCGCGGTACCCAT
CATACAGGAAGTAAAAGACCGGTTTCCGAACTTGAGTTGCTGCAGTTTTGACAAAGGGTTTCATAGTCCACAGAACCAGCTGGAATTAAATGATATTTTG
CATCGCGTGGTACTTCCCCGTAAAGGAAGACTCTCTGCTATCAATAAAGAAATCGAGAGCTCAGCGGAATTTCGGGAAACCCGACGGAAGCATTCTGCAG
TAGAGTCCTCCATAAATGCCCTTGAAAATCATGGCTTGGATCGTTGCCGAGACCGTGGGATAACTGGATTCAAGCGCTATGTCGGGCTCGCTGTTCTGGC
TCGAAATCTGCAGATTCTTGGCCATGCAATTCAGCAAAAAGAACTCAAGCGAGTACAGCGAGCTGAGAGGAAGCAAAAGCTAACACTTGCCGCATAATTT
TTCTCTCGGATAGTGTACTACTCTACAATCGTGTTTAAAACAGGAGAGGTTCGCCTAAATGCAAGGAAAGTAGGCGACTTCGTTTGGGGGGAGGCGACAA
ACGGTTGAAGCATGGGATGTTCCAATTTCAATAATTGGGATATCCGATATAAATGTCGCCCTTTCCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1371 bp | 456 aa | 227 | 1597 | + | No |
Chemistry : DDE
ORF sequence :
MYCNLPLRAQVFEVLEKLTPSTINSNKGRRGMDLWKILVLGTLRLDCNWDYDKLKEIADNHKTVREMLGHGQMDWKVRYPLQTLKDNISLFTPGILDEIN
QIVVNHGQKTIGKGSEQKINASCDSFVLETDAHYPTDINLLFDAMRKTILLIMKLCDQLGLSGWRKGKYLLKEVKKLFRKVQLLKRSTSKIKEKKAARER
LIIDAHLAYLELCQALIEKAKDSLLSICPSDIISSLKADEITKYIAHAERQMEQIRRRVVEGESIPHNEKVFSIFEEHTEWISKGKAGVRQELGLRVCVV
KDQFGFILHHRVMQNETDDKIAVPIIQEVKDRFPNLSCCSFDKGFHSPQNQLELNDILHRVVLPRKGRLSAINKEIESSAEFRETRRKHSAVESSINALE
NHGLDRCRDRGITGFKRYVGLAVLARNLQILGHAIQQKELKRVQRAERKQKLTLAA
QIVVNHGQKTIGKGSEQKINASCDSFVLETDAHYPTDINLLFDAMRKTILLIMKLCDQLGLSGWRKGKYLLKEVKKLFRKVQLLKRSTSKIKEKKAARER
LIIDAHLAYLELCQALIEKAKDSLLSICPSDIISSLKADEITKYIAHAERQMEQIRRRVVEGESIPHNEKVFSIFEEHTEWISKGKAGVRQELGLRVCVV
KDQFGFILHHRVMQNETDDKIAVPIIQEVKDRFPNLSCCSFDKGFHSPQNQLELNDILHRVVLPRKGRLSAINKEIESSAEFRETRRKHSAVESSINALE
NHGLDRCRDRGITGFKRYVGLAVLARNLQILGHAIQQKELKRVQRAERKQKLTLAA
Blast result :
Comments
ISDpr11 is 66% aa similar to ISPph5.
References
1] ISfinder annotation (2016)
2] Didonato,R.J., Young,N.D., Butler,J.E., Chin,K.J., Hixson,K.K., Mouser,P., Lipton,M.S., Deboy,R. and Methe,B.A. (2010) PLoS ONE 5 (11), E14072.
2] Didonato,R.J., Young,N.D., Butler,J.E., Chin,K.J., Hixson,K.K., Mouser,P., Lipton,M.S., Deboy,R. and Methe,B.A. (2010) PLoS ONE 5 (11), E14072.